BAC Information

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BAC

Clone NameB6Ng01-298E03
Chromosome14 (Build37)
Map Location 4,384,783 - 4,533,886
singlet/doubletdoublet
Overlap geneLOC100041119, 2610042L04Rik, LOC100041139, LOC100041151
Upstream geneLOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808
Downstream geneLOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298E03.bB6Ng01-298E03.g
ACCGA093413GA093414
length1,2071,141
definitionB6Ng01-298E03.b B6Ng01-298E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,384,783 - 4,385,992)(4,532,730 - 4,533,886)
sequence
gaattctcaaatattcctataccatgcctgctggacactgccatgcccct
gccttgataatattggactgaacctctgaacctgtaagccagccccaatt
aaatgttctccctctgttgccttggtcaaggtgtctcttcatagaaatga
aaccctaactaagacagtatgtctgactacataaatgtcttattgttgtt
ttgagatagggccttacaagataggccaggctatagtcaaatttaccatc
ctcttgcctcagccttctgagcagtataattaaaatacccattgcctgct
tgtacaatgttttcaattaagaaaatacctagacacttttcaaatatctc
aagtaatgcaatgtccattttagtatgcaaatattttagtgtatcatgaa
atatttacaaaaagtatttcaaacaaggttaattacttaaactctggcct
tttgttagcttggttttgagacagagtttgatgtagcccaggctggcctg
ggactccctttgtaaatgaggagagccttgcggcactgatcccctgcctc
tatgccctgagcattagaattccaggtgagtgacactgcaccttgtttct
atgcaatactgggaactaaatccagagcttcatgcatgctagcaaagcag
tctaccagtgagctgcctccccagcccaaactgttctgcactgttcactg
cctgccaaacaggggaatgaccccggggatcttcaatgggaactaaagtc
agtgtgccttgttccaatgataatattcacattgcaagtatttaataact
atgcagtcattcatggaaagatatttgtgtgtgtgtgtgtgtgtctgtgt
gtgcgtgtgctcgcgcaaacatgtcacagtaacatatttgatgaggtaaa
ggtcagctgtcttcttctctctcttctctcttctctctcttctctctctc
tctctctctctctctcttctctgggtagcctggctttctggaacttaaca
ttgtaagaaccaggctgggctcaaactcagaaattccaccctggcctctt
gcctcccaaggtggcttgggatttaagggcgggcaatacactatggacct
gcagcttgtccttttctttagatctcacttggcttctttaatttttggac
aggttatctaatcctgaaacctgattgacttggccaacacactctcaatg
tgggcat
gaattcctgaaagagcagaaaagctatcttccagctggtttgctaagcta
tgttcctcttcctaaccaatattgtcagacatatgccacactccctgtta
caggcctggttgccttgaaatgtataagctgcctcagacataaagatatg
gggaacattgtcaggtcatatcagatgggacgcagggaaatcctgaagtt
catagtgcttagcactatcaagcactaattaatcgtgtgtcttctaatcc
aaagtgtctgagtcctcaccacatgacatgaccaggggagcatccttctc
tgttcttttcatcagagactcaagttacctacagtaatctggaagatgaa
gtgcttcaactcccttccatgaaaggacacactgttattttcatagtgcc
cactcctgacattttttgccactcaaaatgaaattaaatagctcccagaa
aagtagctgcaggtttgtcaattcctggctttgtcaaactaatcatcaga
aattcttgactctttttctgacattgacaaagtccaaggcttcagcttgt
aagacctactcctggaaggcccagctcaagcctacctctaccaggaagtt
ccccaactctgcccaggactcactgtgccttctccataaccatttccttc
ttcctttttcatgagaaaggattccctcttccttctctgttggtctggtc
tctccttcatcgccattctctttctgaaatatcctgagcagccaggaaaa
cattcctgctggtgaacccagagcaaacagaaagggatgaaccacaggca
gttgctgtcaccacaacacaggtgacaacacagaagattctagttctatc
ctagatacaagagattctccaaggaaggcattactgatgatgtcactagc
aactgccatgacctacctgttaactagttctgcccagcttggtccttttc
tggggtgcctctctggagctctcatggaccgtgggatcccctttggcaac
tctcttcaaagctgagattctactgctcattagatgtcatgtgctttgag
ggggcacgttggtagactctgacatgctaagagatttgtgcaccaatctc
tagactgtggaatgttagataatgtttcacaccaggtaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4384783_4385992
seq2: B6Ng01-298E03.b_48_1254

seq1  GAATTCTCAAATATTCCTATACCATGCCTGCTGGACACTGCCATGCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATATTCCTATACCATGCCTGCTGGACACTGCCATGCCCCT  50

seq1  GCCTTGATAATATTGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATAATATTGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATT  100

seq1  AAATGTTCTCCCTCTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCTCCCTCTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATGA  150

seq1  AACCCTAACTAAGACAGTATGTCTGACTACATAAATGTCTTATTGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAACTAAGACAGTATGTCTGACTACATAAATGTCTTATTGTTGTT  200

seq1  TTGAGATAGGGCCTTACAAGATAGGCCAGGCTATAGTCAAATTTACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAGGGCCTTACAAGATAGGCCAGGCTATAGTCAAATTTACCATC  250

seq1  CTCTTGCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCTGCT  300

seq1  TGTACAATGTTTTCAATTAAGAAAATACCTAGACACTTTTCAAATATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATGTTTTCAATTAAGAAAATACCTAGACACTTTTCAAATATCTC  350

seq1  AAGTAATGCAATGTCCATTTTAGTATGCAAATATTTTAGTGTATCATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGCAATGTCCATTTTAGTATGCAAATATTTTAGTGTATCATGAA  400

seq1  ATATTTACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACTCTGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACTCTGGCCT  450

seq1  TTTGTTAGCTTGGTTTTGAGACAGAGTTTGATGTAGCCCAGGCTGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGCTTGGTTTTGAGACAGAGTTTGATGTAGCCCAGGCTGGCCTG  500

seq1  GGACTCCCTTTGTAAATGAGGAGAGCCTTGCGGCACTGATCCCCTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCCTTTGTAAATGAGGAGAGCCTTGCGGCACTGATCCCCTGCCTC  550

seq1  TATGCCCTGAGCATTAGAATTCCAGGTGAGTGACACTGCACCTTGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTGAGCATTAGAATTCCAGGTGAGTGACACTGCACCTTGTTTCT  600

seq1  ATGCAATACTGGGAACTAAATCCAGAGCTTCATGCATGCTAGCAAAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATACTGGGAACTAAATCCAGAGCTTCATGCATGCTAGCAAAGCAG  650

seq1  TCTACCAGTGAGCTGCCTCCCCAGCCCAAACTGTTCTGCACTGTTCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAGTGAGCTGCCTCCCCAGCCCAAACTGTTCTGCACTGTTCACTG  700

seq1  CCTGCCAAACAGGGGAATGACCCCGGGGATCTTCAATGGGAACTAAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAAACAGGGGAATGACCCCGGGGATCTTCAATGGGAACTAAAGTC  750

seq1  AGTGTGCCTTGTTCCAATGATAATATTCACATTGCAAGTATTTAATAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCCTTGTTCCAATGATAATATTCACATTGCAAGTATTTAATAACT  800

seq1  ATGCAGTCATTCATGGAAAGATATTTGTGTGTGTGTGTGTGTGTCTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCATTCATGGAAAGATATTTGTGTGTGTGTGTGTGTGTCTGTGT  850

seq1  GTGCGTGTGCTCGCGCAAACATGTCACAGTAACATATTTGATGAGGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGTGCTCGCGCAAACATGTCACAGTAACATATTTGATGAGGTAAA  900

seq1  GGTCAGCTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  950
      ||||||||||||||||||   ||||||                  |||||
seq2  GGTCAGCTGTCTTCTTCTCTCTCTTCT-----------------CTCTTC  933

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTCCTTCTTCTGTGT  1000
      |   ||||||   |||   |||   |||  ||||||       |||| ||
seq2  TCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTC-------TCTGGGT  976

seq1  AGCCCTGGCTTTCCTGGAACTT-ACATTGTA--GACCAGGCTGGCCTCAA  1047
      || ||||||||| ||||||||| ||||||||   |||||||||| |||||
seq2  AG-CCTGGCTTT-CTGGAACTTAACATTGTAAGAACCAGGCTGGGCTCAA  1024

seq1  ACTCAGAAA-TCCACC--TGCCTC-TGCCTCCCAA-GTG--CTGGGA-TT  1089
      ||||||||| ||||||   ||||| |||||||||| |||   ||||| ||
seq2  ACTCAGAAATTCCACCCTGGCCTCTTGCCTCCCAAGGTGGCTTGGGATTT  1074

seq1  AAAGGCGGGCA--TCACTAT-GACCTGCAGC-TGTC---TTCTTTAG---  1129
      || ||||||||   |||||| |||||||||| ||||   ||||||||   
seq2  AAGGGCGGGCAATACACTATGGACCTGCAGCTTGTCCTTTTCTTTAGATC  1124

seq1  TCACTTTGC-TCTTTAATTTTTGGACAAGGTTTATCCTTAATCCTGAATC  1178
      |||||| || |||||||||||||||||  | |||||  |||||||||| |
seq2  TCACTTGGCTTCTTTAATTTTTGGACA--GGTTATC--TAATCCTGAAAC  1170

seq1  TCTGATTGGCTTGGCCAACA-ACTC-----ATGGGCAT  1210
       ||||||| ||||||||||| ||||      |||||||
seq2  -CTGATTGACTTGGCCAACACACTCTCAATGTGGGCAT  1207

seq1: chr14_4532730_4533886
seq2: B6Ng01-298E03.g_68_1208 (reverse)

seq1  ATTTA-CTGTTGTGAAACA-TATACTACA-TCCACAGTCCCTAGAGATTT  47
      ||||| ||| ||||||||| |||   ||| ||||||||  ||||||||| 
seq2  ATTTACCTGGTGTGAAACATTATCTAACATTCCACAGT--CTAGAGATT-  47

seq1  GGGTGCCAACAAAATCTCTTAAGCATGTCAGAGTCCTAACCAACGTTCCC  97
       |||||  || ||||||||| ||||||||||||||   |||||||| |||
seq2  -GGTGC--AC-AAATCTCTT-AGCATGTCAGAGTC--TACCAACGTGCCC  90

seq1  CCTCAAAAGCACATGACATCTAATGAAGCAGTAGAATTCTCCAGCTTTGG  147
      |||| |||||||||||||||||||| |||||||||| ||| |||||||| 
seq2  CCTC-AAAGCACATGACATCTAATG-AGCAGTAGAA-TCT-CAGCTTTG-  135

seq1  AAGGAGAGGTTGCCAAAGGGGATCCCACGGGTCCATGAGAGGCTCCAGGA  197
       | |||| |||||||||||||||||||| ||||||||||| |||||| ||
seq2  -AAGAGA-GTTGCCAAAGGGGATCCCAC-GGTCCATGAGA-GCTCCA-GA  180

seq1  GAGGCACCCCAGAAAAGGACCAAGCTGGGCAGAACTAGTTAACAGGTAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACCCCAGAAAAGGACCAAGCTGGGCAGAACTAGTTAACAGGTAGG  230

seq1  TCATGGCAGTTGCTAGTGACATCATCAGTAATGCCTTCCTTGGAGAATCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAGTTGCTAGTGACATCATCAGTAATGCCTTCCTTGGAGAATCT  280

seq1  CTTGTATCTAGGATAGAACTAGAATCTTCTGTGTTGTCACCTGTGTTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATCTAGGATAGAACTAGAATCTTCTGTGTTGTCACCTGTGTTGTG  330

seq1  GTGACAGCAACTGCCTGTGGTTCATCCC-TTCTGTTTGCTCTGGGTTCAC  396
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGACAGCAACTGCCTGTGGTTCATCCCTTTCTGTTTGCTCTGGGTTCAC  380

seq1  CAGCAGGAATGTTTTCCTGGCTGCTCAGGATATTTCAGAAAGAGAATGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAATGTTTTCCTGGCTGCTCAGGATATTTCAGAAAGAGAATGGC  430

seq1  GATGAAGGAGAGACCAGACCAACAGAGAAGGAAGAGGGAATCCTTTCTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGAGAGACCAGACCAACAGAGAAGGAAGAGGGAATCCTTTCTCA  480

seq1  TGAAAAAGGAAGAAGGAAATGGTTATGGAGAAGGCACAGTGAGTCCTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGGAAGAAGGAAATGGTTATGGAGAAGGCACAGTGAGTCCTGGG  530

seq1  CAGAGTTGGGGAACTTCCTGGTAGAGGTAGGCTTGAGCTGGGCCTTCCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGGGGAACTTCCTGGTAGAGGTAGGCTTGAGCTGGGCCTTCCAG  580

seq1  GAGTAGGTCTTACAAGCTGAAGCCTTGGACTTTGTCAATGTCAGAAAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGTCTTACAAGCTGAAGCCTTGGACTTTGTCAATGTCAGAAAAAG  630

seq1  AGTCAAGAATTTCTGATGATTAGTTTGACAAAGCCAGGAATTGACAAACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAATTTCTGATGATTAGTTTGACAAAGCCAGGAATTGACAAACC  680

seq1  TGCAGCTACTTTTCTGGGAGCTATTTAATTTCATTTTGAGTGGCAAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTACTTTTCTGGGAGCTATTTAATTTCATTTTGAGTGGCAAAAAA  730

seq1  TGTCAGGAGTGGGCACTATGAAAATAACAGTGTGTCCTTTCATGGAAGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAGTGGGCACTATGAAAATAACAGTGTGTCCTTTCATGGAAGGG  780

seq1  AGTTGAAGCACTTCATCTTCCAGATTACTGTAGGTAACTTGAGTCTCTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGCACTTCATCTTCCAGATTACTGTAGGTAACTTGAGTCTCTGA  830

seq1  TGAAAAGAACAGAGAAGGATGCTCCCCTGGTCATGTCATGTGGTGAGGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAACAGAGAAGGATGCTCCCCTGGTCATGTCATGTGGTGAGGAC  880

seq1  TCAGACACTTTGGATTAGAAGACACACGATTAATTAGTGCTTGATAGTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACTTTGGATTAGAAGACACACGATTAATTAGTGCTTGATAGTGC  930

seq1  TAAGCACTATGAACTTCAGGATTTCCCTGCGTCCCATCTGATATGACCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTATGAACTTCAGGATTTCCCTGCGTCCCATCTGATATGACCTG  980

seq1  ACAATGTTCCCCATATCTTTATGTCTGAGGCAGCTTATACATTTCAAGGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCCCCATATCTTTATGTCTGAGGCAGCTTATACATTTCAAGGC  1030

seq1  AACCAGGCCTGTAACAGGGAGTGTGGCATATGTCTGACAATATTGGTTAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGCCTGTAACAGGGAGTGTGGCATATGTCTGACAATATTGGTTAG  1080

seq1  GAAGAGGAACATAGCTTAGCAAACCAGCTGGAAGATAGCTTTTCTGCTCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAACATAGCTTAGCAAACCAGCTGGAAGATAGCTTTTCTGCTCT  1130

seq1  TTCAGGAATTC  1157
      |||||||||||
seq2  TTCAGGAATTC  1141