BAC Information

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BAC

Clone NameB6Ng01-298H20
Chromosome14 (Build37)
Map Location 110,390,539 - 110,513,126
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298H20.bB6Ng01-298H20.g
ACCGA093582GA093583
length1,1081,128
definitionB6Ng01-298H20.b B6Ng01-298H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,390,539 - 110,391,653)(110,511,999 - 110,513,126)
sequence
gaattcagttctctagaagcatagtagatataataatacaagatgtaaat
atgtcataattgcttcatcaattttaattgaaaatgcatattttagtact
attcttgaacaataaaaaaacaaaatggaaaatttttaaaaacctgtaca
gtagaaaaatcttctgaagatatcactatacttgatttcaagcaccacta
cagatatccattaacaatatcacatggtattcgaattaaaacagacagat
tgatcaatagaattgaccagagacagagatataaattcatggagatgtaa
atttgcaaacctatggatatctaaattttaagatgaaggcaaatttatac
aacagagttgtgttgctttgatttctcttttttggactttaagagtttta
ttcatttctttccactgtttctttttcttgaccttcttaagcatttttta
ttttattttctacacttgcttttatattcctgatgttcttgaatgcaaat
atttatttcctctagttttttttgtttgtttgtttgtttatgctttcttg
gatttctatagggatgcattcatttcctctttaagtaccaatatagttgg
ttttaagatctttttctcggtgatctttttcttgtttcttctgtttggct
atgttggaatatttatgtcctactgttatagaatatagggctagatactg
atatccatgttttgttattgtttggtgaggattttgtttgttttgtttca
tatctgcatttttagaagaatgtggatgaccctaactgtggacttttcct
gtttggctggccttgtttaagctggtgtgtccacagggaattgtcttgct
tgatgttgaaacctggggaggcagtggatgacctgccagagaaaggacag
gaaaagaatgctcctttgggacctataagggcactttgaagacggagaag
aaggcaccagtcctattcttgcttcttgacagccacagccttaagcttgg
tcttaagggaacagaaggaatgtcctaagccaagtactgttcttcttgaa
ttgaggccactattttcctatgacctttttaagaatcatagtatgctcat
tatttttg

gaattcctaaaagaacatctttttttccttaggcctttcaataacagtgt
gtgttttagggtacaggaagagaaatgccaaattgagacagagggaaaga
gatgtggatgaaaagtgtttggaaggaagtaactgaaattgtgtacaggc
aagatcactcctgttcttttaattctctcttacacagtcctctcctgcag
cctttgggatcgttgtgtgtgtttcaagataattaatatgtaataaaata
atgttctccaactgaattataacttttcattcgttgagattcaggaagca
atattttactctttggactttaagagatagaataaagtcagagctcctta
cagtatgctgtattcaggatatggttttgtaatatattctccagaaagag
tcaagtcttgctgtcaggcaaatttgtttgtgtgcacaactgcacatgca
aatgcatatggagacctgaggttaggctttagtgttgtatctcagatgca
ttggtgattcatctctagtgatgtatatgtgttcatgtgtgatgttgcat
atctgtgcaaggtatttgtaagttacaagatataggtgatattcctttga
tacaattcatctttcttcatatcatacagtgtaaatcatgggcctggcat
ataccgttagtcaggatttcagggatcccttgttctgccttttaacatgg
attctgtgataaaattttggtccagctgcctgcttggcaagtacttcata
gactgagacctccaccaaataaaagttatacctcacttgtatacaagaca
ctccttaaccattgtgtttttgtcctctctggtcatgataacccaattta
attataatattgcgtggtttctcgcacctctttttatactagcaagattt
ttcgttaatatagagcttaatagggaggcttctagaaagtcctctcattc
ctttgatcataactctaagatttagataaactagagtaaaaattcagatg
aaaaacttgcctagttgactgcaaaagagcttgctgcatgcaatagaagt
ggtgttgtttctagatttaatatggtgttaaatagaaaacatttggcaat
aaagtccacctcaaaacagaaatcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110390539_110391653
seq2: B6Ng01-298H20.b_49_1156

seq1  GAATTCAGTTCTCTAGAAGCATAGTAGATATAATAATACAAGATGTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCTAGAAGCATAGTAGATATAATAATACAAGATGTAAAT  50

seq1  ATGTCATAATTGCTTCATCAATTTTAATTGAAAATGCATATTTTAGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATAATTGCTTCATCAATTTTAATTGAAAATGCATATTTTAGTACT  100

seq1  ATTCTTGAACAATAAAAAAACAAAATGGAAAATTTTTAAAAACCTGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAACAATAAAAAAACAAAATGGAAAATTTTTAAAAACCTGTACA  150

seq1  GTAGAAAAATCTTCTGAAGATATCACTATACTTGATTTCAAGCACCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAATCTTCTGAAGATATCACTATACTTGATTTCAAGCACCACTA  200

seq1  CAGATATCCATTAACAATATCACATGGTATTCGAATTAAAACAGACAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCCATTAACAATATCACATGGTATTCGAATTAAAACAGACAGAT  250

seq1  TGATCAATAGAATTGACCAGAGACAGAGATATAAATTCATGGAGATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATAGAATTGACCAGAGACAGAGATATAAATTCATGGAGATGTAA  300

seq1  ATTTGCAAACCTATGGATATCTAAATTTTAAGATGAAGGCAAATTTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAACCTATGGATATCTAAATTTTAAGATGAAGGCAAATTTATAC  350

seq1  AACAGAGTTGTGTTGCTTTGATTTCTCTTTTTTGGACTTTAAGAGTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTTGTGTTGCTTTGATTTCTCTTTTTTGGACTTTAAGAGTTTTA  400

seq1  TTCATTTCTTTCCACTGTTTCTTTTTCTTGACCTTCTTAAGCATTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTTTCCACTGTTTCTTTTTCTTGACCTTCTTAAGCATTTTTTA  450

seq1  TTTTATTTTCTACACTTGCTTTTATATTCCTGATGTTCTTGAATGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCTACACTTGCTTTTATATTCCTGATGTTCTTGAATGCAAAT  500

seq1  ATTTATTTCCTCTAGTTTTTTTTGTTTGTTTGTTTGTTTATGCTTTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCCTCTAGTTTTTTTTGTTTGTTTGTTTGTTTATGCTTTCTTG  550

seq1  GATTTCTATAGGGATGCATTCATTTCCTCTTTAAGTACCAATATAGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTATAGGGATGCATTCATTTCCTCTTTAAGTACCAATATAGTTGG  600

seq1  TTTTAAGATCTTTTTCTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  650
      |||||||||||||||||||           |  | ||||| || ||| ||
seq2  TTTTAAGATCTTTTTCTCG----------GTGATCTTTTTCTTGTTTCTT  640

seq1  TTTTTTGGCTATGTTGGAATATTTATGTCCTACTGTTATAGAATATAGGG  700
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGCTATGTTGGAATATTTATGTCCTACTGTTATAGAATATAGGG  690

seq1  CTAGATACTGATATCCATG-TTTGTTATTGTTTGGTGAGGATTTTGTTTG  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAGATACTGATATCCATGTTTTGTTATTGTTTGGTGAGGATTTTGTTTG  740

seq1  TTTTGTTTCATATCTGCATTTTTAGATG-ATGT-GATGA-CCTAACTGT-  795
      |||||||||||||||||||||||||| | |||| ||||| ||||||||| 
seq2  TTTTGTTTCATATCTGCATTTTTAGAAGAATGTGGATGACCCTAACTGTG  790

seq1  GAC-TTTCCTGTTTGGCTGG-CTTGTTT-AGCTGGTGTGTCCACAGGGAA  842
      ||| |||||||||||||||| ||||||| |||||||||||||||||||||
seq2  GACTTTTCCTGTTTGGCTGGCCTTGTTTAAGCTGGTGTGTCCACAGGGAA  840

seq1  -TGTC-TGC-TGATGTTGAAACCT-GGGAGGCAGT-GATGA-CTGCCAAG  886
       |||| ||| |||||||||||||| |||||||||| ||||| ||||| ||
seq2  TTGTCTTGCTTGATGTTGAAACCTGGGGAGGCAGTGGATGACCTGCC-AG  889

seq1  AGGAAGGACAGGAGAAG-ATGCTCC-TTGGGACTTAT-AGGGCAC-TTGA  932
      || |||||||||| ||| ||||||| ||||||| ||| ||||||| ||||
seq2  AGAAAGGACAGGAAAAGAATGCTCCTTTGGGACCTATAAGGGCACTTTGA  939

seq1  AGAAGGGAGAAGAAAGGCCACAAGTCCTAATC-TGCTTCCTTGACAGGCA  981
      || | |||||||||  | ||| ||||||| || ||||| ||||||| || 
seq2  AG-ACGGAGAAGAA--GGCACCAGTCCTATTCTTGCTT-CTTGACA-GCC  984

seq1  ACAGCCTTAAGGCTTGGGTCTAGGGGAACAGAAGGGAATGTCTTAAGGCA  1031
      |||||||||| ||||||   || |||||||||| |||||||| |||| ||
seq2  ACAGCCTTAA-GCTTGGTCTTAAGGGAACAGAA-GGAATGTCCTAAGCCA  1032

seq1  GAGTACCTGTTCTTCCTTGATTATAAAAGGCACACTATTTTCTAATGA-C  1080
       |||| ||||||||| |  |||     |||| ||||||||||  |||| |
seq2  -AGTA-CTGTTCTTCTTGAATT----GAGGC-CACTATTTTCCTATGACC  1075

seq1  TTTTTAAGAATCATAGTAATGCTTCATTATTTTTG  1115
      ||||||||||||||||| |||| ||||||||||||
seq2  TTTTTAAGAATCATAGT-ATGC-TCATTATTTTTG  1108


seq1: chr14_110511999_110513126
seq2: B6Ng01-298H20.g_65_1192 (reverse)

seq1  GAGTGATTTCTGTTTTTGAGT-GAC-TTAATGCAAAATGTTTTCTATTTA  48
      ||||||||||||||||   || ||| ||| ||| ||||||||||||||||
seq2  GAGTGATTTCTGTTTTGAGGTGGACTTTATTGCCAAATGTTTTCTATTTA  50

seq1  AACACATATTAAATCTAGAA--CACA-CACTTTCCTATTTGCATGCAGGC  95
      |   ||||||||||||||||   ||| |||||  ||| ||||||||| ||
seq2  ACACCATATTAAATCTAGAAACAACACCACTT--CTA-TTGCATGCA-GC  96

seq1  AAGCTCTTTTGCAGTCAACTAGGCAAGTTTTTCATCCTGAATTTTTACTC  145
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGCTCTTTTGCAGTCAACTAGGCAAGTTTTTCAT-CTGAATTTTTACTC  145

seq1  TAGTTTATCTAAATCTTAGAGGTTATGATCAAAGGAATGAGAGGAC-TTC  194
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TAGTTTATCTAAATCTTAGA-GTTATGATCAAAGGAATGAGAGGACTTTC  194

seq1  TAGAAGCCTCCCTATTAAGCTCTATATTAACGAAAAATCTTGCTAGTATA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCTCCCTATTAAGCTCTATATTAACGAAAAATCTTGCTAGTATA  244

seq1  AAAAGAGGTGCGAGAAACCACGCAATATTATAATTAAATTGGGTTATCAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGTGCGAGAAACCACGCAATATTATAATTAAATTGGGTTATCAT  294

seq1  GACCAGAGAGGACAAAAACACAATGGTTAAGGAGTGTCTTGTATACAAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGAGGACAAAAACACAATGGTTAAGGAGTGTCTTGTATACAAGT  344

seq1  GAGGTATAACTTTTATTTGGTGGAGGTCTCAGTCTATGAAGTACTTGCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATAACTTTTATTTGGTGGAGGTCTCAGTCTATGAAGTACTTGCCA  394

seq1  AGCAGGCAGCTGGACCAAAATTTTATCACAGAATCCATGTTAAAAGGCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGCTGGACCAAAATTTTATCACAGAATCCATGTTAAAAGGCAG  444

seq1  AACAAGGGATCCCTGAAATCCTGACTAACGGTATATGCCAGGCCCATGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGATCCCTGAAATCCTGACTAACGGTATATGCCAGGCCCATGAT  494

seq1  TTACACTGTATGATATGAAGAAAGATGAATTGTATCAAAGGAATATCACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGTATGATATGAAGAAAGATGAATTGTATCAAAGGAATATCACC  544

seq1  TATATCTTGTAACTTACAAATACCTTGCACAGATATGCAACATCACACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTGTAACTTACAAATACCTTGCACAGATATGCAACATCACACAT  594

seq1  GAACACATATACATCACTAGAGATGAATCACCAATGCATCTGAGATACAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATATACATCACTAGAGATGAATCACCAATGCATCTGAGATACAA  644

seq1  CACTAAAGCCTAACCTCAGGTCTCCATATGCATTTGCATGTGCAGTTGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGCCTAACCTCAGGTCTCCATATGCATTTGCATGTGCAGTTGTG  694

seq1  CACACAAACAAATTTGCCTGACAGCAAGACTTGACTCTTTCTGGAGAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACAAATTTGCCTGACAGCAAGACTTGACTCTTTCTGGAGAATA  744

seq1  TATTACAAAACCATATCCTGAATACAGCATACTGTAAGGAGCTCTGACTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAACCATATCCTGAATACAGCATACTGTAAGGAGCTCTGACTT  794

seq1  TATTCTATCTCTTAAAGTCCAAAGAGTAAAATATTGCTTCCTGAATCTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATCTCTTAAAGTCCAAAGAGTAAAATATTGCTTCCTGAATCTCA  844

seq1  ACGAATGAAAAGTTATAATTCAGTTGGAGAACATTATTTTATTACATATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATGAAAAGTTATAATTCAGTTGGAGAACATTATTTTATTACATATT  894

seq1  AATTATCTTGAAACACACACAACGATCCCAAAGGCTGCAGGAGAGGACTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTTGAAACACACACAACGATCCCAAAGGCTGCAGGAGAGGACTG  944

seq1  TGTAAGAGAGAATTAAAAGAACAGGAGTGATCTTGCCTGTACACAATTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGAGAATTAAAAGAACAGGAGTGATCTTGCCTGTACACAATTTC  994

seq1  AGTTACTTCCTTCCAAACACTTTTCATCCACATCTCTTTCCCTCTGTCTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTCCTTCCAAACACTTTTCATCCACATCTCTTTCCCTCTGTCTC  1044

seq1  AATTTGGCATTTCTCTTCCTGTACCCTAAAACACACACTGTTATTGAAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGCATTTCTCTTCCTGTACCCTAAAACACACACTGTTATTGAAAG  1094

seq1  GCCTAAGGAAAAAAAGATGTTCTTTTAGGAATTC  1128
      ||||||||||||||||||||||||||||||||||
seq2  GCCTAAGGAAAAAAAGATGTTCTTTTAGGAATTC  1128


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