BAC Information

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BAC

Clone NameB6Ng01-298J24
Chromosome14 (Build37)
Map Location 96,263,301 - 96,419,612
singlet/doubletdoublet
Overlap gene4921530L21Rik
Upstream geneLOC677613, LOC100043784, LOC382931
Downstream geneKlhl1, LOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298J24.bB6Ng01-298J24.g
ACCGA093684GA093685
length1,1931,123
definitionB6Ng01-298J24.b B6Ng01-298J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,418,423 - 96,419,612)(96,263,301 - 96,264,422)
sequence
gaattcctacctgggcttcttcctttccaaggctagggtagagggaatgc
agatcatgtgtagttttccatgtgggtgctgtgaatgaatactcaggtcc
ccatgctttggcactgagtgcgcaaacttactaagccatctgctgaaccc
cataaccactgttttgtttgtttgtttgcttgtttgtctttttgcttaag
gacaattttaacataatgtatgagaaaatgaatacatgtttggtgaaatc
cccagcagctgctaggaggagagatagagaaaaaaattagtggcttttaa
gttaggaatgaaacagatatagatggcttaccaagaaaggaaaaagcact
cccaagtatggatgagctggtgagtaagtgccgaacaggttctcttctat
tttttcaattctgttaaccaatcatttgcaaagctttaattcttttgtgt
gaaatatcttaagctcacaaccattctgatcattttcataatcttaaatt
tacttgtgtgtaccttgtacagtttactttagatttggtttctctttgct
tctggtattatgacatttgatgggatttttgaacttctgcatgtttataa
gaattatatttttatattaaactgtcatttgcctatcttaaagtgttaca
tgctttcaggttacaaactatgttgtcctagtaaatagcattagtggctc
ttattttaaatgcattctcatttgctttttaagtaacaaaaagttcagag
caaacataattgaaggtaattatttttgaatacacattttcaccatcagc
ttacaaggtgattaaaaaatattatgtcttaatcagagagaatggtatga
tcattttaaataattctttctctaatcacctggagtagcctttttggcta
atgagagacaaataggaaaatagccatggagggcacatacaaacacagca
aggaagtgtgtagcccagactccaccagttctctccaaatccacattctg
ggccactggaatccagcatctggtagacgtataactctcagaaggtcaga
acaactcagaaaggatgccattatgggagaagaagttacaaacaaaattc
caaagttagatcttggcaaagaagtcttgtgaaatgtccatgggactatg
atgaggtattcccaggaacacaaaaatgttctggtaaatttta
gaattccaatgcttatatattaattacttagttgttgccttaggtgtcta
tggagtcattaggagatggtaactaggagaggaaagttaagtctttgtgg
aacatgtcaattcaaaggaatctcaacttgcaataaaaggttattttggg
gggtaaaatttacttttatcaagtagggaaagtcatacaaaagtcaaata
aaaatctacaaattataatgatctggatgatgtttcatttctcctaacag
aatgtcattatatcccaagagactggtagctttttggaaaaaaacagaaa
acaaaacaaaatgaggtttctttaagcattaatagccaattaagcatcaa
ggcaccatcctaccctataaaactggttaactttaaatctgttgcagatc
tttggtacataaatttatatggactttgtctgttcaatagctttccttct
taaggagccctgaattttcttttttttttttttttttttttttgactaca
aataacaggtccgctttcagctcttcctagctgcctttaaacagtaggta
cattgcaaagtcctctcacacttctggttagcttttctgattttcatttc
caattctgggaacttattttctatattctagttgttcagacaacttcaca
tctgcattaacaaactgcttttcttttatactttcagtagaaatttgggg
ataaaacaattgccggccatgctgaatgggttttggccgtaactcatcat
aaagtttgagaagccagattgttttgttttttgttttttctttttttttc
cactttggatttatcaccagtagcacaaaaattgccttaaatgaggtgcc
caataatttttgggtaattttagaggcaaagttcagccaggccatggttg
gcccaacgccttttaaatcccagcactcaagaaggcagaaggcagggtaa
gaattctgagttcgaggccagcctggtctactaagtgagtttcaggacag
caggctacacagaaaaacctattctgaaaaaactaggaaaacaacgacca
cataaaatagagccagttctcagatatagcagtccaaataagtagtggac
atattaatctcagaattggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96418423_96419612
seq2: B6Ng01-298J24.b_48_1240 (reverse)

seq1  TAAAATTT-CCA-AACATTTT--TGTTCCT-GGAATACCTCATCATAATG  45
      |||||||| ||| ||||||||  ||||||| ||||||||||||||||  |
seq2  TAAAATTTACCAGAACATTTTTGTGTTCCTGGGAATACCTCATCATA--G  48

seq1  TCCCAT-GACATTTCACAGAACTCTTTTTGCAAAGATCTTACTTTTGAAT  94
      |||||| |||||||||||  ||| | ||||| ||||||| ||||| ||||
seq2  TCCCATGGACATTTCACAAGACT-TCTTTGCCAAGATCTAACTTTGGAAT  97

seq1  TTTG-TTGTAAC--CTTCTCTCCAT-ATGGCATCCTTTCTGAGTTG-TCT  139
      |||| |||||||  |||||| |||| |||||||||||||||||||| |||
seq2  TTTGTTTGTAACTTCTTCTC-CCATAATGGCATCCTTTCTGAGTTGTTCT  146

seq1  GACCTTCTGAGAAGTTAATTACGTCTACCAGATGCTGGATTCCAGTGG-C  188
      ||||||||||| |||||  ||||||||||||||||||||||||||||| |
seq2  GACCTTCTGAG-AGTTA--TACGTCTACCAGATGCTGGATTCCAGTGGCC  193

seq1  CAGAATGTGGATTTGGAGAAGAACTGGT-GAGTCTGGGCTACACACTTCC  237
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  CAGAATGTGGATTTGGAG-AGAACTGGTGGAGTCTGGGCTACACACTTCC  242

seq1  TTGCTGTGTTTTGTATGTGCCCTCCATGGCTATTTTCCTATTTGTTCTCT  287
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TTGCTGTG-TTTGTATGTGCCCTCCATGGCTATTTTCCTATTTG-TCTCT  290

seq1  CATTAGCCAAAAAGGCTACTCCAGGTGATTAGAGAAAGAATTATTTAAAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCCAAAAAGGCTACTCCAGGTGATTAGAGAAAGAATTATTTAAAA  340

seq1  TGATCATACCATTCTCTCTGATTAAGACATAATATTTTTTAATCACCTTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATACCATTCTCTCTGATTAAGACATAATATTTTTTAATCACCTTG  390

seq1  TAAGCTGATGGTGAAAATGTGTATTCAAAAATAATTACCTTCAATTATGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGATGGTGAAAATGTGTATTCAAAAATAATTACCTTCAATTATGT  440

seq1  TTGCTCTGAACTTTTTGTTACTTAAAAAGCAAATGAGAATGCATTTAAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGAACTTTTTGTTACTTAAAAAGCAAATGAGAATGCATTTAAAA  490

seq1  TAAGAGCCACTAATGCTATTTACTAGGACAACATAGTTTGTAACCTGAAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCACTAATGCTATTTACTAGGACAACATAGTTTGTAACCTGAAA  540

seq1  GCATGTAACACTTTAAGATAGGCAAATGACAGTTTAATATAAAAATATAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAACACTTTAAGATAGGCAAATGACAGTTTAATATAAAAATATAA  590

seq1  TTCTTATAAACATGCAGAAGTTCAAAAATCCCATCAAATGTCATAATACC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAACATGCAGAAGTTCAAAAATCCCATCAAATGTCATAATACC  640

seq1  AGAAGCAAAGAGAAACCAAATCTAAAGTAAACTGTACAAGGTACACACAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAAGAGAAACCAAATCTAAAGTAAACTGTACAAGGTACACACAA  690

seq1  GTAAATTTAAGATTATGAAAATGATCAGAATGGTTGTGAGCTTAAGATAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTAAGATTATGAAAATGATCAGAATGGTTGTGAGCTTAAGATAT  740

seq1  TTCACACAAAAGAATTAAAGCTTTGCAAATGATTGGTTAACAGAATTGAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAAAAGAATTAAAGCTTTGCAAATGATTGGTTAACAGAATTGAA  790

seq1  AAAATAGAAGAGAACCTGTTCGGCACTTACTCACCAGCTCATCCATACTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAGAGAACCTGTTCGGCACTTACTCACCAGCTCATCCATACTT  840

seq1  GGGAGTGCTTTTTCCTTTCTTGGTAAGCCATCTATATCTGTTTCATTCCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCTTTTTCCTTTCTTGGTAAGCCATCTATATCTGTTTCATTCCT  890

seq1  AACTTAAAAGCCACTAATTTTTTTCTCTATCTCTCCTCCTAGCAGCTGCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAAGCCACTAATTTTTTTCTCTATCTCTCCTCCTAGCAGCTGCT  940

seq1  GGGGATTTCACCAAACATGTATTCATTTTCTCATACATTATGTTAAAATT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTTCACCAAACATGTATTCATTTTCTCATACATTATGTTAAAATT  990

seq1  GTCCTTAAGCAAAAAGACAAACAAGCAAACAAACAAACAAAACAGTGGTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAAGCAAAAAGACAAACAAGCAAACAAACAAACAAAACAGTGGTT  1040

seq1  ATGGGGTTCAGCAGATGGCTTAGTAAGTTTGCGCACTCAGTGCCAAAGCA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTCAGCAGATGGCTTAGTAAGTTTGCGCACTCAGTGCCAAAGCA  1090

seq1  TGGGGACCTGAGTATTCATTCACAGCACCCACATGGAAAACTACACATGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCTGAGTATTCATTCACAGCACCCACATGGAAAACTACACATGA  1140

seq1  TCTGCATTCCCTCTACCCTAGCCTTGGAAAGGAAGAAGCCCAGGTAGGAA  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTCCCTCTACCCTAGCCTTGGAAAGGAAGAAGCCCAGGTAGGAA  1190

seq1  TTC  1190
      |||
seq2  TTC  1193

seq1: chr14_96263301_96264422
seq2: B6Ng01-298J24.g_67_1189

seq1  GAATTCCAATGCTTATATATTAATTACTTAGTTGTTGCCTTAGGTGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGCTTATATATTAATTACTTAGTTGTTGCCTTAGGTGTCTA  50

seq1  TGGAGTCATTAGGAGATGGTAACTAGGAGAGGAAAGTTAAGTCTTTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCATTAGGAGATGGTAACTAGGAGAGGAAAGTTAAGTCTTTGTGG  100

seq1  AACATGTCAATTCAAAGGAATCTCAACTTGCAATAAAAGGTTATTTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTCAATTCAAAGGAATCTCAACTTGCAATAAAAGGTTATTTTGGG  150

seq1  GGGTAAAATTTACTTTTATCAAGTAGGGAAAGTCATACAAAAGTCAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAATTTACTTTTATCAAGTAGGGAAAGTCATACAAAAGTCAAATA  200

seq1  AAAATCTACAAATTATAATGATCTGGATGATGTTTCATTTCTCCTAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACAAATTATAATGATCTGGATGATGTTTCATTTCTCCTAACAG  250

seq1  AATGTCATTATATCCCAAGAGACTGGTAGCTTTTTGGAAAAAAACAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATTATATCCCAAGAGACTGGTAGCTTTTTGGAAAAAAACAGAAA  300

seq1  ACAAAACAAAATGAGGTTTCTTTAAGCATTAATAGCCAATTAAGCATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAATGAGGTTTCTTTAAGCATTAATAGCCAATTAAGCATCAA  350

seq1  GGCACCATCCTACCCTATAAAACTGGTTAACTTTAAATCTGTTGCAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATCCTACCCTATAAAACTGGTTAACTTTAAATCTGTTGCAGATC  400

seq1  TTTGGTACATAAATTTATATGGACTTTGTCTGTTCAATAGCTTTCCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACATAAATTTATATGGACTTTGTCTGTTCAATAGCTTTCCTTCT  450

seq1  TAAGGAGCCCTGAATTTTCTTTTTTTTTTTTTTTTTTTTTTTTGACTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCCCTGAATTTTCTTTTTTTTTTTTTTTTTTTTTTTTGACTACA  500

seq1  AATAACAGGTCCGCTTTCAGCTCTTCCTAGCTGCCTTTAAACAGTAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGGTCCGCTTTCAGCTCTTCCTAGCTGCCTTTAAACAGTAGGTA  550

seq1  CATTGCAAAGTCCTCTCACACTTCTGGTTAGCTTTTCTGATTTTCATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAAGTCCTCTCACACTTCTGGTTAGCTTTTCTGATTTTCATTTC  600

seq1  CAATTCTGGGAACTTATTTTCTATATTCTAGTTGTTCAGACAACTTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGGGAACTTATTTTCTATATTCTAGTTGTTCAGACAACTTCACA  650

seq1  TCTGCATTAACAAACTGCTTTTCTTTTATACTTTCAGTAGAAATTTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTAACAAACTGCTTTTCTTTTATACTTTCAGTAGAAATTTGGGG  700

seq1  ATAAAACAATTGCCGGCCATGCTGAATGGGTTTTGGCCGTAACTCATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAATTGCCGGCCATGCTGAATGGGTTTTGGCCGTAACTCATCAT  750

seq1  -AAGTTTGAGAAGCCAGATTGTTTTTGTTTTTTGTTTTTTCTTTTTTTTT  799
       |||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  AAAGTTTGAGAAGCCAGATTG-TTTTGTTTTTTGTTTTTTC-TTTTTTTT  798

seq1  TCTACTTTTGATTTATCACAAGTAGCACAAAAATTGCC-TAAATGA-GTG  847
      || ||||| |||||||||| |||||||||||||||||| ||||||| |||
seq2  TCCACTTTGGATTTATCACCAGTAGCACAAAAATTGCCTTAAATGAGGTG  848

seq1  CCC-ATAATTTT--GGT-ATTTTAGAG--CAAGTTCAGCCAGG-CATGG-  889
      ||| ||||||||  ||| |||||||||   ||||||||||||| ||||| 
seq2  CCCAATAATTTTTGGGTAATTTTAGAGGCAAAGTTCAGCCAGGCCATGGT  898

seq1  TGGCCC-ACGCCTTTT-AATCCCAGCACTC-AGGAGGCAG-AGGCAGG--  933
      |||||| ||||||||| ||||||||||||| || |||||| |||||||  
seq2  TGGCCCAACGCCTTTTAAATCCCAGCACTCAAGAAGGCAGAAGGCAGGGT  948

seq1  TAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  983
       ||| ||||||||||||||||||||||||||||  |||||||| ||||||
seq2  AAGAATTCTGAGTTCGAGGCCAGCCTGGTCTACTAAGTGAGTTTCAGGAC  998

seq1  AGCCAGGCTACACAGAAAAACCCTATTCTGAAAAAAAACAAAGAAAAACA  1033
      || ||||||||||||||||| |||||||||  ||||||| | |||||   
seq2  AG-CAGGCTACACAGAAAAA-CCTATTCTG--AAAAAACTAGGAAAA--C  1042

seq1  AACAAACAAACAAAAAAATAGAGCAAGTTCATCAGATATAGCAAGGTCAC  1083
      ||| | ||    | |||||||||| ||||| ||||||||||||  ||| |
seq2  AACGACCA---CATAAAATAGAGCCAGTTC-TCAGATATAGCA--GTC-C  1085

seq1  AAATAAGTAGTTTGACATATTATTCTTCAGAATT-GAATA  1122
      |||||||||| | ||||||||| || |||||||| |||||
seq2  AAATAAGTAG-TGGACATATTAATC-TCAGAATTGGAATA  1123