BAC Information

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BAC

Clone NameB6Ng01-300A10
Chromosome14 (Build37)
Map Location 67,171,791 - 67,220,336
singlet/doubletdoublet
Overlap genenone
Upstream geneElp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
Downstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300A10.bB6Ng01-300A10.g
ACCGA094706GA094707
length1,1571,124
definitionB6Ng01-300A10.b B6Ng01-300A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,171,791 - 67,172,949)(67,219,764 - 67,220,336)
sequence
gaattcaatgaatgctcaaatcatttcccaatgtatcaataatgttgagt
caaatactcagtttcaaagaaatgatggtaactaattaactgtgctaaag
cttagaactcataactctgacacagagttgaaaggtcagcaatgtgttga
tctccattttatagactaggaaatggactcacggagagttgagctaactc
ctcagagacacaggttagtgtcaaaacgtctaaattagaacccaagcaat
cccttttccagtccctggctcacagtcactcacactctgctcaagcctgg
tgtcacccggtgtcgccagtaggctttactggaacttcctatgactctag
tatggtctgacttctagatgacttggatctcaagagaaaaggaagaattc
aaacgtcacctgcttctccgattgtctggagcgtgttgatgtgggacaga
ggaaagggagtgaactctgagtcacacagctgtcaaagcagagttctttg
catgtacagtctttgagtccactgaattcacagcaatgaattgattctcg
cacctgtaaagtgtaggtgcccatccaaacctcctcgtgtctgtgtggaa
aaagagatacctagtaacagaactgctaggcttcttcagttcccctcagg
agctgactaacagccaaaatgtcccctgtgctgtttccagctaacttagg
cactcctcataaagtaagtatatcaggtctctcggaacttgctttaaatg
aaattttcacaagacttccttcagagagagtgaagtctaactggtgtggt
gggaaagtgaactgaacaaaaaagctaatgcagaaaggtagtgggggatt
tttcctttagaacttcacacggagctatcacatccgtagtcctcacatgg
cggccactatcctttcgctggttttagattttgatgtcatggcagcttat
ggctcacataagagacaaaggcacaggagaagacagaaatgatgctggga
aaataacttttccacatacagagtactcacagtttcagctccagctagct
cattcccctcgacagatctgcaggggtaacaacattctcatttagcataa
agctaggcatgtattttttttttcttcagagagctcagcctagccagtaa
tgtcaga
gaattcagttgagttcctgaagttctgttcggttccattcagttcacgca
gtcagtgcagtcagagtagttcagttcgtggaagtgagagcaaagagaaa
agcaaagcaaagcagttcagtcagaagccaagagaagccagtttggatca
gtcaccttggagaggagttttgagccagaacagctgagttgaaccagcca
gccagagtttagaaagaaatgagtgatcttattcagcagtaagcctctga
gatgacaattacatctgttaaggtctagataaaatgttaagacctatgta
cctgctacctggctagcctgccattgtaagaaaactttctcatatgtttc
tgttgttacgaggacactttctaatgccaagctgattacatattctgtgc
ccctggaaaccaatcatacacaatcagtagaactgcttttgtatagccag
gcacaataaagttggactggaacccaccacccagcagcacttcctgcacc
tatgtatgaacttttatgatatctgcctttataaactgcccctgggatgg
acccaacataagagatataagaaactatttgaaataagatttccattttg
agtagtggttgagtcaagtttaagtttccaagacctccctggaaactgac
cttttagttggcagaaggagacttgtaagtgggcaactgacaccctgttt
gacaaattagacatgaatgttagacaaggcaagtcccctgccacagttga
ataccaatgggagcaggataagtgttcgacatgttcctaaggaactcccc
ctatccctaaatcctaactggtgaaataatttggcatggacatttgtaga
tcccagacttaaaaagtctaggaccttaactcagagtcatgactcagttc
ccaagtctggaccatggccctggtcaatcagtttggggtgtatactcaat
aaactatccctatcttactgagatcgtgttcttgtggtttgtggaggcaa
ttcctagactgaaacacatctggtgaataaatgtgacatttactcttcta
gacaagtgacttctatgtacaatgagactgctcagcagggcatcactgtg
gatggtgtgagaggtgccatcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_67171791_67172949
seq2: B6Ng01-300A10.b_48_1204

seq1  GAATTCAATGAATGCTCAAATCATTTCCCAATGTATCAATAATGTTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAATGCTCAAATCATTTCCCAATGTATCAATAATGTTGAGT  50

seq1  CAAATACTCAGTTTCAAAGAAATGATGGTAACTAATTAACTGTGCTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTCAGTTTCAAAGAAATGATGGTAACTAATTAACTGTGCTAAAG  100

seq1  CTTAGAACTCATAACTCTGACACAGAGTTGAAAGGTCAGCAATGTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACTCATAACTCTGACACAGAGTTGAAAGGTCAGCAATGTGTTGA  150

seq1  TCTCCATTTTATAGACTAGGAAATGGACTCACGGAGAGTTGAGCTAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTTATAGACTAGGAAATGGACTCACGGAGAGTTGAGCTAACTC  200

seq1  CTCAGAGACACAGGTTAGTGTCAAAACGTCTAAATTAGAACCCAAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGACACAGGTTAGTGTCAAAACGTCTAAATTAGAACCCAAGCAAT  250

seq1  CCCTTTTCCAGTCCCTGGCTCACAGTCACTCACACTCTGCTCAAGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCCAGTCCCTGGCTCACAGTCACTCACACTCTGCTCAAGCCTGG  300

seq1  TGTCACCCGGTGTCGCCAGTAGGCTTTACTGGAACTTCCTATGACTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCGGTGTCGCCAGTAGGCTTTACTGGAACTTCCTATGACTCTAG  350

seq1  TATGGTCTGACTTCTAGATGACTTGGATCTCAAGAGAAAAGGAAGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTGACTTCTAGATGACTTGGATCTCAAGAGAAAAGGAAGAATTC  400

seq1  AAACGTCACCTGCTTCTCCGATTGTCTGGAGCGTGTTGATGTGGGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCACCTGCTTCTCCGATTGTCTGGAGCGTGTTGATGTGGGACAGA  450

seq1  GGAAAGGGAGTGAACTCTGAGTCACACAGCTGTCAAAGCAGAGTTCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGAGTGAACTCTGAGTCACACAGCTGTCAAAGCAGAGTTCTTTG  500

seq1  CATGTACAGTCTTTGAGTCCACTGAATTCACAGCAATGAATTGATTCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAGTCTTTGAGTCCACTGAATTCACAGCAATGAATTGATTCTCG  550

seq1  CACCTGTAAAGTGTAGGTGCCCATCCAAACCTCCTCGTGTCTGTGTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTAAAGTGTAGGTGCCCATCCAAACCTCCTCGTGTCTGTGTGGAA  600

seq1  AAAGAGATACCTAGTAACAGAACTGCTAGGCTTCTTCAGTTCCCCTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATACCTAGTAACAGAACTGCTAGGCTTCTTCAGTTCCCCTCAGG  650

seq1  AGCTGACTAACAGCCAAAATGTCCCCTGTGCTGTTTCCAGCTAACTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTAACAGCCAAAATGTCCCCTGTGCTGTTTCCAGCTAACTTAGG  700

seq1  CACTCCTCATAAAGTAAGTATATCAGGTCTCTCGGAACTTGCTTTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTCATAAAGTAAGTATATCAGGTCTCTCGGAACTTGCTTTAAATG  750

seq1  AAATTTTCACAAGACTTCCTTCAGAGAGAGTGAAGTCTAACTGGTGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCACAAGACTTCCTTCAGAGAGAGTGAAGTCTAACTGGTGTGGT  800

seq1  GGGAAAGTGAACTGAACAAAAAAGCTAATGCAGAAAGGTAGTGGGGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTGAACTGAACAAAAAAGCTAATGCAGAAAGGTAGTGGGGGATT  850

seq1  TTTCCTTTAGAACTTCACACGGAGCTATCACATCCGTAGTCCTCACATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTAGAACTTCACACGGAGCTATCACATCCGTAGTCCTCACATGG  900

seq1  CGGCCACTATCCTTTCGCTGGTTTTAGATTTTGATGTCATGGCAGCTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCACTATCCTTTCGCTGGTTTTAGATTTTGATGTCATGGCAGCTTAT  950

seq1  GGCTCACATAAGAGACAAAGGCACA-GAG-AGACAGAAATGATGCTGGGA  998
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  GGCTCACATAAGAGACAAAGGCACAGGAGAAGACAGAAATGATGCTGGGA  1000

seq1  AAATAAC-TTTCCACATACAGAGTACTCACAGTTTCCAGCTCCAGCTAGC  1047
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATAACTTTTCCACATACAGAGTACTCACAGTTT-CAGCTCCAGCTAGC  1049

seq1  TCATTTCCCCTCGACAGATCTGGCCAAGGGGTAACAACATTCTCATTTAG  1097
      ||| ||||||||||||||||||    ||||||||||||||||||||||||
seq2  TCA-TTCCCCTCGACAGATCTG---CAGGGGTAACAACATTCTCATTTAG  1095

seq1  CATAAAGCTTAAGGGAATGTA-TTTTTTTTTCCTCAGAGAGCTCAG-CTA  1145
      |||||||||    || ||||| |||||||||| ||||||||||||| |||
seq2  CATAAAGCT---AGGCATGTATTTTTTTTTTCTTCAGAGAGCTCAGCCTA  1142

seq1  G-CAGTAATGTCAGA  1159
      | |||||||||||||
seq2  GCCAGTAATGTCAGA  1157

seq1: chr14_67219764_67220336
seq2: B6Ng01-300A10.g_623_1190 (reverse)

seq1  AGTGAT-GCACCTCCTCACA-CATCCACAGTGATGGCCCTTGCTGAGCCA  48
      |||||| |||||| |||||| ||||||||||||||  || ||||||| ||
seq2  AGTGATGGCACCT-CTCACACCATCCACAGTGATG--CCCTGCTGAG-CA  46

seq1  GTCTTCATTTGTACATAGAAGTCACTATGTCTAGAAGAGTAAATGTCACA  98
      ||| ||| |||||||||||||||||| |||||||||||||||||||||||
seq2  GTC-TCA-TTGTACATAGAAGTCACT-TGTCTAGAAGAGTAAATGTCACA  93

seq1  TTTATTCACCAGATGTGTTTCAGTCTAGGAATTGCCT-CACAAACCACAA  147
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTATTCACCAGATGTGTTTCAGTCTAGGAATTGCCTCCACAAACCACAA  143

seq1  GAACACCGATCTCAGTAAGATAGGGATAGTTTATTGAGTATACACCCCAA  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACA-CGATCTCAGTAAGATAGGGATAGTTTATTGAGTATACACCCCAA  192

seq1  ACTGATTGACCAGGGCCATGGTCCAGACTTGGGAACTGAGTCATGACTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTGACCAGGGCCATGGTCCAGACTTGGGAACTGAGTCATGACTCT  242

seq1  GAGTTAAGGTCCTAGACTTTTTAAGTCTGGGATCTACAAATGTCCATGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAGGTCCTAGACTTTTTAAGTCTGGGATCTACAAATGTCCATGCC  292

seq1  AAATTATTTCACCAGTTAGGATTTAGGGATAGGGGGAGTTCCTTAGGAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCACCAGTTAGGATTTAGGGATAGGGGGAGTTCCTTAGGAAC  342

seq1  ATGTCGAACACTTATCCTGCTCCCATTGGTATTCAACTGTGGCAGGGGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGAACACTTATCCTGCTCCCATTGGTATTCAACTGTGGCAGGGGAC  392

seq1  TTGCCTTGTCTAACATTCATGTCTAATTTGTCAAACAGGGTGTCAGTTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGTCTAACATTCATGTCTAATTTGTCAAACAGGGTGTCAGTTGC  442

seq1  CCACTTACAAGTCTCCTTCTGCCAACTAAAAGGTCAGTTTCCAGGGAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACAAGTCTCCTTCTGCCAACTAAAAGGTCAGTTTCCAGGGAGGT  492

seq1  CTTGGAAACTTAAACTTGACTCAACCACTACTCAAAATGGAAATCTTATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAACTTAAACTTGACTCAACCACTACTCAAAATGGAAATCTTATT  542

seq1  TCAAATAGTTTCTTATATCTCTTATG  573
      ||||||||||||||||||||||||||
seq2  TCAAATAGTTTCTTATATCTCTTATG  568