BAC Information

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BAC

Clone NameB6Ng01-300A12
Chromosome14 (Build37)
Map Location 89,262,671 - 89,359,028
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300A12.bB6Ng01-300A12.g
ACCGA094710GA094711
length1,133743
definitionB6Ng01-300A12.b B6Ng01-300A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,357,881 - 89,359,028)(89,262,671 - 89,263,401)
sequence
gaattctatgtgccacttaaattatattatagttgcaaatgcaagttttt
tcattggttccttttcttgttcttgtatgttcatttattgaaagcttagt
aaatttttgggaaacttttaacatcttagaaattatcttacactttctaa
tattgaaaattaccactgagttgtaaagttttcttgcattatgtatatga
gacaactcagtcttgttcctggctagtttttgctgaattttgtagttata
ctacagatgtgagaatgaagacttgctaaaagcttaattaagatttgtta
aatgacggcatagaatggaattttgtattgcttatttgttacaataatta
ttatatagtccttacagaacatttttacttcaaaatacagtaagtaatta
ccatacacaaaagaacaaaatctgttttcttgaaaggtaataattggatc
tgctttttgtttaaaatggaaaaaaagaataaatctaaagcataattttt
atataaatcttcatattttcatttaaatatatacactgttattttattaa
gccaaataactatcttttaaaaagtttaggtatgaatgactttatatatt
atttatgaaatgattgttttatattcctatattagtttttcttagttcat
tgacttgactttcttcccaatatattttttctgtttcatattattgaggt
tatatgtgagggttaaagtacagatttaaaaccttgagggttctgggcgc
agtaaatctaaagataattaaattgctaatacttcttagctaaatgacca
aaaaagaattatctaatttgctaaacctcaattatcttaccaatagcatt
tgcattagaaaaggattatgaagtaaacaattctcattaagtcatcaatc
gataaatgttattgtgggtcatgagcatactgaagtctgattcaatgaat
agacagtcatcagcagttatacataaagtcagacttctcacaggatgcag
ctcaatgttcacaaaccactgcttgctgatagaagcaattcacaaatcca
ccctacagtataaactgcataaaacaaatgacttctctttagtatagtca
cagatgaataaagtttctttacaatcaatgtga
gaattctttgtatattctagataaaaaccctctatcagatgtacagcaag
aaataacacaatttacagactgtttttgcacatgactaatggtgtgtgta
catggcattacagaagctttttagtttataatgtcccactcttcaattgc
taatcttcataagtatgctatacggacttttctttactgagcaagtcatt
tcatattttactttattttgcttcatcctacacgtgaccaccataattgt
tgaatatgatttcttatctctaatataatatttagttttgttccctttat
caaatgtcaggtggctgtagaagcatggacctgtatgtcagtttcaattt
tattcagtacataaataaggatatctttatggccatataaggctgttttg
ctgctatagcttttattagaatattaaatcacacatggtgattatcagtg
ctattattgtttaggaatttttgtggtgagtctggtgtgtaattatataa
gtttttcatgggagttttatggggttttgttgaatctactttcctaggat
gactattttcatagtattgacatcagtaattattcagaagtttttctgtc
ctacagtatttgctttaatatatttctccaacatcttgaatatcaaatta
aatatcaaaatcattcacatccactttcaaattcagcaaaagaatattga
agtacagtgaaacacattatttctttaatatctttctaattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89357881_89359028
seq2: B6Ng01-300A12.b_44_1176 (reverse)

seq1  TCACATTGATTGTTAAAGAAACTTTTATTCATCTTGTTGAACTATTACTA  50
      |||||||||||| ||||||||| |||||||||| |||   |||| |||||
seq2  TCACATTGATTG-TAAAGAAAC-TTTATTCATC-TGT--GACTA-TACTA  44

seq1  AAGAG-AGTCATTTGTTTTTATGCAGGTTTATACTGTAGGGTGGATTTGT  99
      ||||| ||||||||| ||||||||| ||||||||||||||||||||||||
seq2  AAGAGAAGTCATTTG-TTTTATGCA-GTTTATACTGTAGGGTGGATTTGT  92

seq1  GAATTGCTTCTTATTCAGGCAAGCAATTGGTTTTGTGAACAATTGAGCTG  149
      |||||||||||   ||| ||||||| |  | ||||||||| |||||||||
seq2  GAATTGCTTCT--ATCA-GCAAGCAGT--GGTTTGTGAAC-ATTGAGCTG  136

seq1  CATCCTGGTGAGAAGTCTGACTTTATGTATAACTGCCTGATGACTGTCTA  199
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  CATCCT-GTGAGAAGTCTGACTTTATGTATAACTG-CTGATGACTGTCTA  184

seq1  TTCATTGAATCAGACTTCAGTATGCTCATGACCCACAATAACATTTATCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGAATCAGACTTCAGTATGCTCATGACCCACAATAACATTTATCG  234

seq1  ATTGATGACTTAATGAGAATTGTTTACTTCATAATCCTTTTCTAATGCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGACTTAATGAGAATTGTTTACTTCATAATCCTTTTCTAATGCAA  284

seq1  ATGCTATTGGTAAGATAATTGAGGTTTAGCAAATTAGATAATTCTTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTGGTAAGATAATTGAGGTTTAGCAAATTAGATAATTCTTTTTT  334

seq1  GGTCATTTAGCTAAGAAGTATTAGCAATTTAATTATCTTTAGATTTACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTAGCTAAGAAGTATTAGCAATTTAATTATCTTTAGATTTACTG  384

seq1  CGCCCAGAACCCTCAAGGTTTTAAATCTGTACTTTAACCCTCACATATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGAACCCTCAAGGTTTTAAATCTGTACTTTAACCCTCACATATAA  434

seq1  CCTCAATAATATGAAACAGAAAAAATATATTGGGAAGAAAGTCAAGTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATAATATGAAACAGAAAAAATATATTGGGAAGAAAGTCAAGTCAA  484

seq1  TGAACTAAGAAAAACTAATATAGGAATATAAAACAATCATTTCATAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAGAAAAACTAATATAGGAATATAAAACAATCATTTCATAAATA  534

seq1  ATATATAAAGTCATTCATACCTAAACTTTTTAAAAGATAGTTATTTGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAGTCATTCATACCTAAACTTTTTAAAAGATAGTTATTTGGCT  584

seq1  TAATAAAATAACAGTGTATATATTTAAATGAAAATATGAAGATTTATATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATAACAGTGTATATATTTAAATGAAAATATGAAGATTTATATA  634

seq1  AAAATTATGCTTTAGATTTATTCTTTTTTTCCATTTTAAACAAAAAGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATGCTTTAGATTTATTCTTTTTTTCCATTTTAAACAAAAAGCAG  684

seq1  ATCCAATTATTACCTTTCAAGAAAACAGATTTTGTTCTTTTGTGTATGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTATTACCTTTCAAGAAAACAGATTTTGTTCTTTTGTGTATGGT  734

seq1  AATTACTTACTGTATTTTGAAGTAAAAATGTTCTGTAAGGACTATATAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTACTGTATTTTGAAGTAAAAATGTTCTGTAAGGACTATATAAT  784

seq1  AATTATTGTAACAAATAAGCAATACAAAATTCCATTCTATGCCGTCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTAACAAATAAGCAATACAAAATTCCATTCTATGCCGTCATTT  834

seq1  AACAAATCTTAATTAAGCTTTTAGCAAGTCTTCATTCTCACATCTGTAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCTTAATTAAGCTTTTAGCAAGTCTTCATTCTCACATCTGTAGT  884

seq1  ATAACTACAAAATTCAGCAAAAACTAGCCAGGAACAAGACTGAGTTGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTACAAAATTCAGCAAAAACTAGCCAGGAACAAGACTGAGTTGTCT  934

seq1  CATATACATAATGCAAGAAAACTTTACAACTCAGTGGTAATTTTCAATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATAATGCAAGAAAACTTTACAACTCAGTGGTAATTTTCAATAT  984

seq1  TAGAAAGTGTAAGATAATTTCTAAGATGTTAAAAGTTTCCCAAAAATTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTGTAAGATAATTTCTAAGATGTTAAAAGTTTCCCAAAAATTTA  1034

seq1  CTAAGCTTTCAATAAATGAACATACAAGAACAAGAAAAGGAACCAATGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTTCAATAAATGAACATACAAGAACAAGAAAAGGAACCAATGAA  1084

seq1  AAAACTTGCATTTGCAACTATAATATAATTTAAGTGGCACATAGAATTC  1148
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGCATTTGCAACTATAATATAATTTAAGTGGCACATAGAATTC  1133

seq1: chr14_89262671_89263401
seq2: B6Ng01-300A12.g_66_796

seq1  GAATTCTTTGTATATTCTAGATAAAAACCCTCTATCAGATGTACAGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTATATTCTAGATAAAAACCCTCTATCAGATGTACAGCAAG  50

seq1  AAATAACACAATTTACAGACTGTTTTTGCACATGACTAATGGTGTGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACAATTTACAGACTGTTTTTGCACATGACTAATGGTGTGTGTA  100

seq1  CATGGCATTACAGAAGCTTTTTAGTTTATAATGTCCCACTCTTCAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATTACAGAAGCTTTTTAGTTTATAATGTCCCACTCTTCAATTGC  150

seq1  TAATCTTCATAAGTATGCTATACGGACTTTTCTTTACTGAGCAAGTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCATAAGTATGCTATACGGACTTTTCTTTACTGAGCAAGTCATT  200

seq1  TCATATTTTACTTTATTTTGCTTCATCCTACACGTGACCACCATAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTACTTTATTTTGCTTCATCCTACACGTGACCACCATAATTGT  250

seq1  TGAATATGATTTCTTATCTCTAATATAATATTTAGTTTTGTTCCCTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGATTTCTTATCTCTAATATAATATTTAGTTTTGTTCCCTTTAT  300

seq1  CAAATGTCAGGTGGCTGTAGAAGCATGGACCTGTATGTCAGTTTCAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCAGGTGGCTGTAGAAGCATGGACCTGTATGTCAGTTTCAATTT  350

seq1  TATTCAGTACATAAATAAGGATATCTTTATGGCCATATAAGGCTGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTACATAAATAAGGATATCTTTATGGCCATATAAGGCTGTTTTG  400

seq1  CTGCTATAGCTTTTATTAGAATATTAAATCACACATGGTGATTATCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATAGCTTTTATTAGAATATTAAATCACACATGGTGATTATCAGTG  450

seq1  CTATTATTGTTTAGGAATTTTTGTGGTGAGTCTGGTGTGTAATTATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTGTTTAGGAATTTTTGTGGTGAGTCTGGTGTGTAATTATATAA  500

seq1  GTTTTTCATGGGAGTTTTATGGGGTTTTGTTGAATCTACTTTCCTAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATGGGAGTTTTATGGGGTTTTGTTGAATCTACTTTCCTAGGAT  550

seq1  GACTATTTTCATAGTATTGACATCAGTAATTATTCAGAAGTTTTTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTTCATAGTATTGACATCAGTAATTATTCAGAAGTTTTTCTGTC  600

seq1  CTACAGTATTTGCTTTAATATATTTCTCCAACATCTTGAATATCAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTATTTGCTTTAATATATTTCTCCAACATCTTGAATATCAAATTA  650

seq1  AATATCAAAATCATTCACATCCACTTTCAAATTCAGCACAAGAATATTGA  700
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATATCAAAATCATTCACATCCACTTTCAAATTCAGCAAAAGAATATTGA  700

seq1  AGTACAGTGAAACACATTATTTCTTTAATAT  731
      |||||||||||||||||||||||||||||||
seq2  AGTACAGTGAAACACATTATTTCTTTAATAT  731