BAC Information

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BAC

Clone NameB6Ng01-300C09
Chromosome14 (Build37)
Map Location 42,576,199 - 42,577,334
singlet/doubletsinglet
Overlap genenone
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849
Downstream gene1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300C09.bB6Ng01-300C09.g
ACCGA094798GA094799
length1,2421,126
definitionB6Ng01-300C09.b B6Ng01-300C09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcaaagtaatatactatgtaataaatttaagaaattattactt
gatcatctcattagatgctgtatcatcccacggatgcaggaatgattcaa
tatatggacatccatcaatgtaatccactatataaaataacttaaaatat
attggataatctcatcagatgctgaaaaagtatttgacaaaatataactt
caaaataaatgcattggaggaatcagaaagtcacggtctatatctgaata
tagaacgagcaatatagagcaatccagttgccaacatcaaaatatatgga
gaaaaattttaagccatcccattaaaatcagagacaaggaaagacttccc
cctcttcccgtatgtattcaacatagtctttgacattttacccagagcaa
tcaggcaaaaatgcagatcaaagtgatacaaattggaagggaggaattca
agacactacaatttgaggagtatgggatattatacataagtgagcccaaa
aaaatccaggagagaactcctacagctgataaaccacttcagcaaagtca
attaatataaaattaactcgaacaatcgaggaactttcctctactcaaag
gataattaggatgaggaagagatttttaaaaactacatacttcacagtag
tcacaaacaatatctaggtgtgattcgaacaaagcaaggcaaagatcaga
atgacaagaacattaagtctctgaacaaagaaatcaaagaagaccgtaga
agatggaaagatctcccatggtcattgatgagcaggattaatatagtaaa
aaaggtccatctcgccaaaagcaatctacggattcaatgcaatccccatc
acaattccaactcattccttcacagagatagaaaaagctattctcaaatt
tatctggaataacatatatcccagtatagcaaaaactattcctaacaata
aaagaatggctcgggaaatcaccatccctgatctcaaaatataccacagg
gcaatagtgataaaatgtcatgtttctggtatagagagacagtagaccaa
cgaatagaattgaagacctagaaatgactaccctcatatggtcactgatc
tttgtcagagcaaaaacatccagtggataaaaggacgcattttccaacaa
ttggtgcttgtttcacacttggcagtctgcattagaagaatgtgccattg
agtatacctaatcccttggtacaaagagctctctcatagttc
gaattcatagaagataatgattcctacaggtgagtcccagacacagctga
gacccagcactaggcagggaatgcttgtggccttctaggactttgtacaa
aagtgagagctctagtcctatactctctgtttcttaataggagccctccc
ttgaggcatgggtcttggatttgtacctcttagactcaggtttcctaagt
gtgaatattgtccaagaccctccagtctttattcttccaaattcaggatc
ttctgcatagaaatcatttccaccatgctggggatctcaagcaaccctga
acttctagggttctgacagcagattacaagatctgggatccatgacaaaa
atggaaagagtttataccttttgggtcttctctcctccctaagatggcat
tgccctctccctactgatggttttctggtactacacacatataagcaacc
atgaggaagttttcctcttctgtgatgtatatggaacactcttggtgtag
ggttatcagaaatattttgagtcttcttacatgtggctggtctctggatt
tgacctgcctctatttggtacttatggatatacagtggactctagtcttg
ggctgtctggggatcagagcccttgcagggatcataatatttggaagagt
ggcaggcaaatcgaagataggtgggaatcaacatttatgttttatttgtt
tgtggttcagcatcaggcacacccacctcctgaaagaatgcaatcaattg
aaggaaaaagtaaggatgttgctgaatgagaacagaaagctgctggtaga
gcaggctgaccaggaggcatcctttggtgaagaaaagagttctgtgatga
gaccagcaagaacatacatcccaagtgcaaagcagcagcaggtaggatga
tgtgtatcagaggcacattgccctcatggctaaccatacatatagacaat
ccattgtaacagtccaccaacttatccaggcactcactctgtctcctcca
gtgtttatttagtgatcatctacagctttctgtggagtaggctttttcag
aaactgcatgtttagcaaacagtttttctggcctgctatatcttgcagtc
cacttaggagaatagttgatacacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42576199_42577334
seq2: B6Ng01-300C09.g_68_1193

seq1  GAATTCATAGAAGATAATGATTCCTACAGGTGAGTCCCAGACACAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAGATAATGATTCCTACAGGTGAGTCCCAGACACAGCTGA  50

seq1  GACCCAGCACTAGGCAGGGAATGCTTGTGGCCTTCTAGGACTTTGTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGCACTAGGCAGGGAATGCTTGTGGCCTTCTAGGACTTTGTACAA  100

seq1  AAGTGAGAGCTCTAGTCCTATACTCTCTGTTTCTTAATAGGAGCCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAGCTCTAGTCCTATACTCTCTGTTTCTTAATAGGAGCCCTCCC  150

seq1  TTGAGGCATGGGTCTTGGATTTGTACCTCTTAGACTCAGGTTTCCTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCATGGGTCTTGGATTTGTACCTCTTAGACTCAGGTTTCCTAAGT  200

seq1  GTGAATATTGTCCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATTGTCCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATC  250

seq1  TTCTGCATAGAAATCATTTCCACCATGCTGGGGATCTCAAGCAACCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATAGAAATCATTTCCACCATGCTGGGGATCTCAAGCAACCCTGA  300

seq1  ACTTCTAGGGTTCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGGGTTCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAA  350

seq1  ATGGAAAGAGTTTATACCTTTTGGGTCTTCTCTCCTCCCTAAGATGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGAGTTTATACCTTTTGGGTCTTCTCTCCTCCCTAAGATGGCAT  400

seq1  TGCCCTCTCCCTACTGATGGTTTTCTGGTACTACACACATATAAGCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTCCCTACTGATGGTTTTCTGGTACTACACACATATAAGCAACC  450

seq1  ATGAGGAAGTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAGTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTAG  500

seq1  GGTTATCAGAAATATTTTGAGTCTTCTTACATGTGGCTGGTCTCTGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCAGAAATATTTTGAGTCTTCTTACATGTGGCTGGTCTCTGGATT  550

seq1  TGACCTGCCTCTATTTGGTACTTATGGATATACAGTGGACTCTAGTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGCCTCTATTTGGTACTTATGGATATACAGTGGACTCTAGTCTTG  600

seq1  GGCTGTCTGGGGATCAGAGCCCTTGCAGGGATCATAATATTTGGAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTGGGGATCAGAGCCCTTGCAGGGATCATAATATTTGGAAGAGT  650

seq1  GGCAGGCAAATCGAAGATAGGTGGGAATCAACATTTATGTTTTATTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAAATCGAAGATAGGTGGGAATCAACATTTATGTTTTATTTGTT  700

seq1  TGTGGTTCAGCATCAGGCACACCCACCTCCTGAAAGAATGCAATCAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTCAGCATCAGGCACACCCACCTCCTGAAAGAATGCAATCAATTG  750

seq1  AAGGAAAAAGTAAGGATGTTGCTGAATGAGAACAGAAAGCTGCTGGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAGTAAGGATGTTGCTGAATGAGAACAGAAAGCTGCTGGTAGA  800

seq1  GCAGGCTGACCAGGAGGCATCCTTTGGTGAAGAAAAGAGTTCTGTGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGACCAGGAGGCATCCTTTGGTGAAGAAAAGAGTTCTGTGATGA  850

seq1  GACCAGCAAGAACATACATCCCAAGTGCAAAGCAGCAGCAGGTAGGATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCAAGAACATACATCCCAAGTGCAAAGCAGCAGCAGGTAGGATGA  900

seq1  TGTGTATCAGAGGCACATTGCCCTCATGGCTAACCATACATATAGACAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCAGAGGCACATTGCCCTCATGGCTAACCATACATATAGACAAT  950

seq1  CCATTGTAACAGTCCACCAACTTATCCAGGCACTCACCTCTGTCTCCTCC  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCATTGTAACAGTCCACCAACTTATCCAGGCACTCA-CTCTGTCTCCTCC  999

seq1  AAGTGTTTATTTAGGTGATCATCTACAAGGCTTTCTGTGGAGGTAGCCTT  1050
       |||||||||||| |||||||||||||  |||||||||||| |||| |||
seq2  -AGTGTTTATTTA-GTGATCATCTACA--GCTTTCTGTGGA-GTAGGCTT  1044

seq1  TTTCAAGAAACTGCATGTTTAGCAAACAAATTTTTCTGCCCTGCTATAAT  1100
      |||| |||||||||||||||||||||| | |||||||| |||||||||  
seq2  TTTC-AGAAACTGCATGTTTAGCAAAC-AGTTTTTCTGGCCTGCTATATC  1092

seq1  CTGCAGTTCACTAGGGGAGATTAGTTGATTACACAT  1136
       |||||| ||||   ||||| ||||||| |||||||
seq2  TTGCAGTCCACT-TAGGAGAATAGTTGA-TACACAT  1126