BAC Information

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BAC

Clone NameB6Ng01-301I02
Chromosome14 (Build37)
Map Location 84,849,475 - 84,850,600
singlet/doubletsinglet
Overlap genePcdh17
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream gene9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301I02.bB6Ng01-301I02.g
ACCGA095800GA095801
length6991,105
definitionB6Ng01-301I02.b B6Ng01-301I02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaacagggtagcgactttgaggcaggagataatacagtggtgat
gaaggactgctgcttactggcttgatcctcatagcttgctcaccctgctt
tcttttttttttcccattttttattaggtatttagctcatttacatttcc
aatgctataccaaaagtcccccatacccacccacccccactcccgtaccc
acccactccccctttttggccctggcgttcccctgtactggggcatataa
agtttgcaagtccaatgggcctctctttccagtgatggccgactaggcca
tcttttgatacatatgcagctagagtcaagagctccggggtactggttag
ttcataatgtggttccacctatagggttgcagatccctttagctccttgg
ctactttctctagctcctccattgggagccctgtgatccatccattagct
gactgtgagcatccacttctgtgtttgctaggccccggcatagtctcaca
agagacagctacatctgggtcctttcagtaaaatcttgctagtgtatgca
atggtgtcagcatttggatgctgattatggggtggatccctggatatggc
agtctctacattggtccatccttttcatctcagctccaaactttgtcttt
gtaactcctttccatgggtgtttttgtttccctaattctaaaggagggg
gaattctataacccatcttttaaaggactgaaggaagacagaggaaactg
ttagctgtttcagtggagaatttttaagacagcagtagcatagggaattg
agacactttggtcaaattacaaacttaatccaaagtccattttgtacttt
ggtggaatgggttacagtttttttttttttgacataaaagaatacaaaga
cagtcttttacatactacttaaactgttgaaatttgtggtagtatgtgat
ttttcttggtttgggtttcactctttgtgaggacccaccactatgattta
cagccaataaccagcttcaatggcaatataattaacatagtacaagcact
acatccttccaattttttggatattttattcaagagtgctcttcacttgt
ctaagaagacacacttgctgacaattttactgcaccaatttgattttata
gatttatttttctgctggaaactagataaaaattcaactcacagccctta
aagtagatgattaagtattagccttttgtgacaactttgtcagtggcata
aatatagaacaggtgtacaaaatatttgcaattccaaaatgactacatca
catctataaacaaacatttaatcattattccctctatagagatattagtg
tttataaataccagtttcacgcagttacaggaagacatttttagaagcca
agtttttatagttgagaatttcttttatgtttcatataaactttaagtcc
atgattacatgattactcatatacagtgaatattataaaaatggcatttt
atacttgaatagtaaattacattgtacttggcaagccttgctcacatgga
cactatgctgtcagagaaaatgttttctgcttagtgttagggcatggagg
ggattatattagcaagtcttatgggtcttcaacactcatctgagcatagt
actttgctgagacagcttgcaagcatatagtagccatgacttcattactc
aactaactgcgcccccaacacaaaacgtgttcaattttttatactcagtg
ccaaacgttcaatgcctggctcatcaaggagttgtaacaacatgtgttct
agtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84849475_84850600
seq2: B6Ng01-301I02.g_66_1170 (reverse)

seq1  ATACTTAGAACACATGTTGTTACAAACTCCTCTGAATGAG-CAGGCATTG  49
      |||| |||||||||||||||||| ||||||| || ||||| |||||||||
seq2  ATAC-TAGAACACATGTTGTTAC-AACTCCT-TG-ATGAGCCAGGCATTG  46

seq1  -ACGTTTGCACCTGAGTATAAAAAATTG-ACACGTGTGTGTGTGTGGGGG  97
       |||||||   ||||||||||||||||| ||||||   | |||||  |||
seq2  AACGTTTGGCACTGAGTATAAAAAATTGAACACGT---TTTGTGT-TGGG  92

seq1  GGCGCAGTTTAGTTTGAGGTAAATGGAAAGTCATTGGCCTTACTATTATG  147
      ||||||| |||| |||||   ||||  |||||| ||||  ||||| ||||
seq2  GGCGCAG-TTAG-TTGAG--TAATG--AAGTCA-TGGC--TACTA-TATG  132

seq1  CTTTGCAAAGCTTGTCTCAGCAAAGTTACTATTGCTCAGATGGAGTGTTG  197
      | |||| |||| ||||||||||||| ||||| ||||||||| ||||||||
seq2  C-TTGC-AAGC-TGTCTCAGCAAAG-TACTA-TGCTCAGAT-GAGTGTTG  176

seq1  AAGACCCAT-AGACCTGCTAATATAATCCCCTCCCATGCCCTAACACTAA  246
      ||||||||| |||| ||||||||||||||||| |||||||||||||||||
seq2  AAGACCCATAAGACTTGCTAATATAATCCCCT-CCATGCCCTAACACTAA  225

seq1  GCAGAAAACATTTTCTCTGACAGCATAGTGTCCATGTGAGCAAGGCTTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAACATTTTCTCTGACAGCATAGTGTCCATGTGAGCAAGGCTTGC  275

seq1  CAAGTACAATGTAATTTACTATTCAAGTATAAAATGCCATTTTTATAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAATGTAATTTACTATTCAAGTATAAAATGCCATTTTTATAATA  325

seq1  TTCACTGTATATGAGTAATCATGTAATCATGGACTTAAAGTTTATATGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTATATGAGTAATCATGTAATCATGGACTTAAAGTTTATATGAA  375

seq1  ACATAAAAGAAATTCTCAACTATAAAAACTTGGCTTCTAAAAATGTCTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAGAAATTCTCAACTATAAAAACTTGGCTTCTAAAAATGTCTTC  425

seq1  CTGTAACTGCGTGAAACTGGTATTTATAAACACTAATATCTCTATAGAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTGCGTGAAACTGGTATTTATAAACACTAATATCTCTATAGAGG  475

seq1  GAATAATGATTAAATGTTTGTTTATAGATGTGATGTAGTCATTTTGGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGATTAAATGTTTGTTTATAGATGTGATGTAGTCATTTTGGAAT  525

seq1  TGCAAATATTTTGTACACCTGTTCTATATTTATGCCACTGACAAAGTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATATTTTGTACACCTGTTCTATATTTATGCCACTGACAAAGTTGT  575

seq1  CACAAAAGGCTAATACTTAATCATCTACTTTAAGGGCTGTGAGTTGAATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGGCTAATACTTAATCATCTACTTTAAGGGCTGTGAGTTGAATT  625

seq1  TTTATCTAGTTTCCAGCAGAAAAATAAATCTATAAAATCAAATTGGTGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTAGTTTCCAGCAGAAAAATAAATCTATAAAATCAAATTGGTGCA  675

seq1  GTAAAATTGTCAGCAAGTGTGTCTTCTTAGACAAGTGAAGAGCACTCTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTGTCAGCAAGTGTGTCTTCTTAGACAAGTGAAGAGCACTCTTG  725

seq1  AATAAAATATCCAAAAAATTGGAAGGATGTAGTGCTTGTACTATGTTAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATATCCAAAAAATTGGAAGGATGTAGTGCTTGTACTATGTTAAT  775

seq1  TATATTGCCATTGAAGCTGGTTATTGGCTGTAAATCATAGTGGTGGGTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCCATTGAAGCTGGTTATTGGCTGTAAATCATAGTGGTGGGTCC  825

seq1  TCACAAAGAGTGAAACCCAAACCAAGAAAAATCACATACTACCACAAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGAGTGAAACCCAAACCAAGAAAAATCACATACTACCACAAATT  875

seq1  TCAACAGTTTAAGTAGTATGTAAAAGACTGTCTTTGTATTCTTTTATGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTTTAAGTAGTATGTAAAAGACTGTCTTTGTATTCTTTTATGTC  925

seq1  AAAAAAAAAAAAACTGTAACCCATTCCACCAAAGTACAAAATGGACTTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACTGTAACCCATTCCACCAAAGTACAAAATGGACTTTG  975

seq1  GATTAAGTTTGTAATTTGACCAAAGTGTCTCAATTCCCTATGCTACTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTTTGTAATTTGACCAAAGTGTCTCAATTCCCTATGCTACTGCT  1025

seq1  GTCTTAAAAATTCTCCACTGAAACAGCTAACAGTTTCCTCTGTCTTCCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAAATTCTCCACTGAAACAGCTAACAGTTTCCTCTGTCTTCCTT  1075

seq1  CAGTCCTTTAAAAGATGGGTTATAGAATTC  1126
      ||||||||||||||||||||||||||||||
seq2  CAGTCCTTTAAAAGATGGGTTATAGAATTC  1105