BAC Information

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BAC

Clone NameB6Ng01-301K20
Chromosome14 (Build37)
Map Location 44,515,256 - 44,654,020
singlet/doubletdoublet
Overlap geneLOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1
Upstream geneEG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451
Downstream geneEar2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301K20.bB6Ng01-301K20.g
ACCGA095928GA095929
length868984
definitionB6Ng01-301K20.b B6Ng01-301K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,515,256 - 44,516,119)(44,653,035 - 44,654,020)
sequence
gaattctcaaccttattaagtcttacattctcaatttaattgcttctcag
gagaaagacaagggtgttccagtggccagcatcctccatcctcctgattt
ttcataacaagtggtcatttcacacagaaatcctgggaggtgagctgcaa
agaataagcttggatggacaagtgagtggcccctcggctttgggtggggg
acactggtccctactctggaggaaaaagctgacatagacaggtaaaatgt
ccctaaagtgactgaaagagaactgggaacatctatgttgaaagataatt
tggtctgctgtaacaacaacagccgcagcagcagcagcagcagcaacaac
aataccatacacaaagagagacagaagagtgccacatgtgtttgctttgg
cacactgggcaatagttgatccatttagggaaactcagaactgataaagt
gggaacggggatctggggattgagcctctttcctaggaactgaagaaaac
tgatagtagtctgaggtagggtaggagataaggcctgtgtgttctggaga
cagggctgtgactgcacctgctggacttgccagtcaggttgaccatctgg
aaaaggtgactgtgtgccagttgatctcaacccagggcttggatgtttga
accatctcttctcagagttgatgtaggggtggagaggggcgagaggagag
atggggagtcttactagatggcacattcagggaaatgatgggcagccatg
actttgaagtagccgttttcttctttcagcccactgtgatccacctccct
ggcttcctcctctgcccacaaggcatgcagttgcattttatccccctggc
ttcacacagacttcatca
gaattctcacctgatgaatatcgaacgaatggcagagaagcacctgaaaa
aatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctg
agattccacttcactccagtcagcatggctaagataaaaaattcaggtga
cagcagatgctggtgaggatgtggagaaaggggaacactcctttattgtt
ggtgggattgcaagcttgtacaaacactctggaaatcagtctggtgtttc
ctcagaaaattggacatagtactaccggaggaccccgccatacctctcct
gggcatatatccagaagatgtcccaaccggtaagaaggtcacatgctgac
tgatctttcaagaggacctagcaccatggatttctagcaccactgtagtt
aatatgtttgctgttcaagaggagtggtttctgtgcaggcctgactgtgg
tatactgagagcaggaagtgccatcactgcccagtgggaaggagaggcca
tgtattgcatctgagagcccagaaaggaacagcaaaatggaagctgggga
tccagactgaaagtcagaggtatggacctgaggatgtcaccccagtgatc
ctatcctgcatctgacactgcagcaaggctcacggccacatctggtgatg
ccaagaccacccatgtccttaaagggatggcacctccctgtctgaaatta
atttctgactacagttctgtcctcaggagtcagggcaaaacctctcatta
ttcatctcttttctctgttaattccagctcccctaccttgatacctgtcc
ttcctggtttgtttaaatgatctcacaattgacctctaaaggacagctat
acagggagaggggaagagatagcctcactgagagatcccaattccctggt
ctcctctgccagccacttttttcccatagagaacttcagagagatgttct
agaaagatgcccttgtcttctcagatcatttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44515256_44516119
seq2: B6Ng01-301K20.b_46_913

seq1  GAATTCTCAACCTTATTAAGTCTTACATTCTCAATTTAATTGCTTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACCTTATTAAGTCTTACATTCTCAATTTAATTGCTTCTCAG  50

seq1  GAGAAAGACAAGGGTGTTCCAGTGGCCAGCATCCTCCATCCTCCTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGACAAGGGTGTTCCAGTGGCCAGCATCCTCCATCCTCCTGATTT  100

seq1  TTCATAACAAGTGGTCATTTCACACAGAAATCCTGGGAGGTGAGCTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACAAGTGGTCATTTCACACAGAAATCCTGGGAGGTGAGCTGCAA  150

seq1  AGAATAAGCTTGGATGGACAAGTGAGTGGCCCCTCGGCTTTGGGTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGCTTGGATGGACAAGTGAGTGGCCCCTCGGCTTTGGGTGGGGG  200

seq1  ACACTGGTCCCTACTCTGGAGGAAAAAGCTGACATAGACAGGTAAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTCCCTACTCTGGAGGAAAAAGCTGACATAGACAGGTAAAATGT  250

seq1  CCCTAAAGTGACTGAAAGAGAACTGGGAACATCTATGTTGAAAGATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGTGACTGAAAGAGAACTGGGAACATCTATGTTGAAAGATAATT  300

seq1  TGGTCTGCTGTAACAACAACAGCCGCAGCAGCAGCAGCAGCAGCAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCTGTAACAACAACAGCCGCAGCAGCAGCAGCAGCAGCAACAAC  350

seq1  AATACCATACACAAAGAGAGACAGAAGAGTGCCACATGTGTTTGCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATACACAAAGAGAGACAGAAGAGTGCCACATGTGTTTGCTTTGG  400

seq1  CACACTGGGCAATAGTTGATCCATTTAGGGAAACTCAGAACTGATAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGGCAATAGTTGATCCATTTAGGGAAACTCAGAACTGATAAAGT  450

seq1  GGGAACGGGGATCTGGGGATTGAGCCTCTTTCCTAGGAACTGAAGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGGGGATCTGGGGATTGAGCCTCTTTCCTAGGAACTGAAGAAAAC  500

seq1  TGATAGTAGTCTGAGGTAGGGTAGGAGATAAGGCCTGTGTGTTCTGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTAGTCTGAGGTAGGGTAGGAGATAAGGCCTGTGTGTTCTGGAGA  550

seq1  CAGGGCTGTGACTGCACCTGCTGGACTTGCCAGTCAGGTTGACCATCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGTGACTGCACCTGCTGGACTTGCCAGTCAGGTTGACCATCTGG  600

seq1  AAAAGGTGACTGTGTGCCAGTTGATCTCAACCCAGGGCTTGGATGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGACTGTGTGCCAGTTGATCTCAACCCAGGGCTTGGATGTTTGA  650

seq1  ACCATCTCTTCTCAGAGTTGATGTAGGGGTGGAGAGGGGCGAGAGGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTTCTCAGAGTTGATGTAGGGGTGGAGAGGGGCGAGAGGAGAG  700

seq1  ATGGGGAGTCTTACTAGATGGCACATTCAAGGGAAATGAT-GGCAGCCAT  749
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  ATGGGGAGTCTTACTAGATGGCACATTC-AGGGAAATGATGGGCAGCCAT  749

seq1  GACTTTGAAGTAGGCCGTTTTCTTCTTTCAGGCCCACTGTGATCCACCT-  798
      |||||||||||| ||||||||||||||||| |||||||||||||||||| 
seq2  GACTTTGAAGTA-GCCGTTTTCTTCTTTCA-GCCCACTGTGATCCACCTC  797

seq1  CCTGGCTT-CTCCTCTGCCCACAA-GCATGCAGTTGCA-TTTATCCCCCT  845
      |||||||| ||||||||||||||| ||||||||||||| |||||||||||
seq2  CCTGGCTTCCTCCTCTGCCCACAAGGCATGCAGTTGCATTTTATCCCCCT  847

seq1  -GCTTCACACAGAC-TCATCA  864
       ||||||||||||| ||||||
seq2  GGCTTCACACAGACTTCATCA  868

seq1: chr14_44653035_44654020
seq2: B6Ng01-301K20.g_65_1048 (reverse)

seq1  AACAAATGAATCTGAGAAGACAAGGGCATCTTTCTAGAACATCTTCTCTG  50
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  AACAAATG-ATCTGAGAAGACAAGGGCATCTTTCTAGAACATC-TCTCTG  48

seq1  AAGTTTCTCTATGGGAAAAAAGTGGCTGGCAGAGGAGACCAGGGAATTGG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-TTCTCTATGGGAAAAAAGTGGCTGGCAGAGGAGACCAGGGAATTGG  97

seq1  GATCTCTCAGTGAGGCTATCTCTTCCCCTCTCCCTGTATAGCTGTCC-TT  149
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATCTCTCAGTGAGGCTATCTCTTCCCCTCTCCCTGTATAGCTGTCCTTT  147

seq1  AGAGGTCAATTGTGAGATCATTTAAACAAACCAGGAAGGACAGGTATCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCAATTGTGAGATCATTTAAACAAACCAGGAAGGACAGGTATCAA  197

seq1  GGTAGGGGAGCTGGAATTAACAGAGAAAAGAGATGAATAATGAGAGGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGAGCTGGAATTAACAGAGAAAAGAGATGAATAATGAGAGGTTT  247

seq1  TGCCCTGACTCCTGAGGACAGAACTGTAGTCAGAAATTAATTTCAGACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGACTCCTGAGGACAGAACTGTAGTCAGAAATTAATTTCAGACAG  297

seq1  GGAGGTGCCATCCCTTTAAGGACATGGGTGGTCTTGGCATCACCAGATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGCCATCCCTTTAAGGACATGGGTGGTCTTGGCATCACCAGATGT  347

seq1  GGCCGTGAGCCTTGCTGCAGTGTCAGATGCAGGATAGGATCACTGGGGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTGAGCCTTGCTGCAGTGTCAGATGCAGGATAGGATCACTGGGGTG  397

seq1  ACATCCTCAGGTCCATACCTCTGACTTTCAGTCTGGATCCCCAGCTTCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCAGGTCCATACCTCTGACTTTCAGTCTGGATCCCCAGCTTCCA  447

seq1  TTTTGCTGTTCCTTTCTGGGCTCTCAGATGCAATACATGGCCTCTCCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTTCCTTTCTGGGCTCTCAGATGCAATACATGGCCTCTCCTTC  497

seq1  CCACTGGGCAGTGATGGCACTTCCTGCTCTCAGTATACCACAGTCAGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGCAGTGATGGCACTTCCTGCTCTCAGTATACCACAGTCAGGCC  547

seq1  TGCACAGAAACCACTCCTCTTGAACAGCAAACATATTAACTACAGTGGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAAACCACTCCTCTTGAACAGCAAACATATTAACTACAGTGGTG  597

seq1  CTAGAAATCCATGGTGCTAGGTCCTCTTGAAAGATCAGTCAGCATGTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATCCATGGTGCTAGGTCCTCTTGAAAGATCAGTCAGCATGTGAC  647

seq1  CTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATGG  697

seq1  CGGGGTCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAAACACCAGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAAACACCAGACT  747

seq1  GATTTCCAGAGTGTTTGTACAAGCTTGCAATCCCACCAACAATAAAGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGAGTGTTTGTACAAGCTTGCAATCCCACCAACAATAAAGGAG  797

seq1  TGTTCCCCTTTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCTTTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTT  847

seq1  TTATCTTAGCCATGCTGACTGGAGTGAAGTGGAATCTCAGGGTTGTTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTAGCCATGCTGACTGGAGTGAAGTGGAATCTCAGGGTTGTTTTG  897

seq1  ATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTT  947

seq1  CTCTGCCATTCGTTCGATATTCATCAGGTGAGAATTC  986
      |||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATTCGTTCGATATTCATCAGGTGAGAATTC  984