BAC Information

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BAC

Clone NameB6Ng01-302M11
Chromosome14 (Build37)
Map Location 116,800,880 - 116,965,402
singlet/doubletdoublet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302M11.bB6Ng01-302M11.g
ACCGA096742GA096743
length1,1021,083
definitionB6Ng01-302M11.b B6Ng01-302M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,964,301 - 116,965,402)(116,800,880 - 116,801,965)
sequence
gaattctttaaaactgctggaaataaatctgagatgcagtctctgctaca
gcattggaatagtgagttctaactttttactaaaactagagttggataga
gagagtttatttatatttcaaaatacatttattcttattgataaaatgta
atttaaagttagccctggagcattttaaagtaaactaaaaggaagtgctg
aaaatttattggcatataagtaggtttgaccacattgctgacctaatata
taggacagttcacaacacaggtcagaaggctgtggtaatagttttgccta
aacatcaacacctgggagacaaaggcaggaggaatgttaataaggcatcc
tggactattacacaagttccagaccagtctgaaaattatactgagtatgt
atatatatgaatgactggcgatatcattcagtggtagaacactgaactca
gtgttcatgagttcaacattctaatgctaagaaaatcaatcaaacaaaaa
taatatcaaacaaaaacaaattaaaattagaaatatttaacaaatgtaga
atgaccctcattataggcagtaagaatataaaggatctatttgctgtgat
gaattcatcattatataaaaactggtctgatagtggcatgagcaccctga
cagtaaccatgcacttcctgattgaatttacagtttgctccaagaaatat
tacctatgcttggtaccatgatcagtgtcaatttataacataggccccaa
aggagaatttactgtcattacttggcaaagtagactgtcttagttactat
actatacctgtaaatagataccacaaccaaggcaaattataaaggaaagt
atttaatttgggccttccttaatgtttcagacaatgggtccgtgaccatt
atgatgagtaacaggataggagtcagtgtgcatggcaccagagcagtctg
agagttaaatctgatcacaatagagagagagtagagagagagagagagag
agagagagagctgatgatagatatgttgcgtatccgtaatccttcttaac
accttcttaccaacttggactatacataatggaatatatgagctcccagg
gg

gaattcctgatctctaggaagaattttaattgctgtggaattctgatatg
tactacaaactacttaaaatcaagttccccaacatcttctattcacaaaa
gtcgaaaaattgaacttttctcttttatgaaatgtgacagatttcctcag
cctgaaaaggcactgggcatatacccttggcatcttccatttctttttgt
tgaaaatgaggtacctagcaatttacgcattggggttttaatgagccaca
gtgttagaaggctatgaactgagtaatgttatttgtttgtggtagtgtcc
tgcagctgcagtgttttatacagcacagtgggagacaaacaagacagctc
tttaatcagcttcactactaaatgcagcagaaccattttaggaagcaatg
gcatttcacaaaaaaagagaatgcaaaacataaagtgttattttccacag
ataactagaaaggaagtggggaagaaagcagaactgttcaaatagagact
gataaataaagacttcttggcatttaagtcactgaagaacaagtccttgg
agctggttcttgattcaagtgcagcaattggaatcaattggagcatattt
taccaacaggtttctctcctaacatatttttctatagtgaagcagtagtg
actgataatttcatgccttctgaaaggccacattgaaggctaataaccaa
atttgggattaatctcctaccctggaaatttcaaggattatacgctaata
acatcttccctacctctgtatctctcttcatgttttcccctcttagggct
gtcctcatgacttcttgcctaaatattttcaactggtctctactttttcc
ttggatctcttacacttaggatgaacgaaggactagatctgaccttagca
tccttctgctccagagttttcacgtgtatgaatcttctgtaagattccca
tcaacgtacatccttctggttgaaacccataattgcaggtcttttttttt
tttcctcccattttattagaattaagctcatttacaatgacaatgcctat
accaagtccccatattccacccaacccctatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_116964301_116965402
seq2: B6Ng01-302M11.b_49_1150 (reverse)

seq1  CCCCTGGGAAGCTCATATATTC--ATATGTATGGTTCCCAGTTGGT-AGA  47
      |||||||| |||||||||||||   ||||||| | ||| ||||||| |||
seq2  CCCCTGGG-AGCTCATATATTCCATTATGTATAG-TCCAAGTTGGTAAGA  48

seq1  GTGT-TTAAGAAGGATTA-GGACTCTCTCTCTCTCTCTC-TC-TCTCTCT  93
        || ||||||||||||| |||  | |    | ||| || ||  ||||||
seq2  AGGTGTTAAGAAGGATTACGGATACGCAACATATCTATCATCAGCTCTCT  98

seq1  CTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCCTATTTGTGGATCAGATT  142
      |||||||||||||||||||||| |||||||| ||| |||| |||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTACTCTCTCT-CTA-TTGT-GATCAGATT  145

seq1  TAAACTCTCAGGAACTGCTCTGGTGCCATGCACACTGACTCCTATCCTGT  192
      | |||||||||  |||||||||||||||||||||||||||||||||||||
seq2  T-AACTCTCAG--ACTGCTCTGGTGCCATGCACACTGACTCCTATCCTGT  192

seq1  TACTCATCATAATGGTCACGGACCCATTGTCTGAAACATTAAGGAAGGCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATCATAATGGTCACGGACCCATTGTCTGAAACATTAAGGAAGGCC  242

seq1  CAAATTAAATACTTTCCTTTATAATTTGCCTTGGTTGTGGTATCTATTTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAATACTTTCCTTTATAATTTGCCTTGGTTGTGGTATCTATTTA  292

seq1  CAGGTATAGTATAGTAACTAAGACAGTCTACTTTGCCAAGTAATGACAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATAGTATAGTAACTAAGACAGTCTACTTTGCCAAGTAATGACAGT  342

seq1  AAATTCTCCTTTGGGGCCTATGTTATAAATTGACACTGATCATGGTACCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCTTTGGGGCCTATGTTATAAATTGACACTGATCATGGTACCA  392

seq1  AGCATAGGTAATATTTCTTGGAGCAAACTGTAAATTCAATCAGGAAGTGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGTAATATTTCTTGGAGCAAACTGTAAATTCAATCAGGAAGTGC  442

seq1  ATGGTTACTGTCAGGGTGCTCATGCCACTATCAGACCAGTTTTTATATAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACTGTCAGGGTGCTCATGCCACTATCAGACCAGTTTTTATATAA  492

seq1  TGATGAATTCATCACAGCAAATAGATCCTTTATATTCTTACTGCCTATAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATTCATCACAGCAAATAGATCCTTTATATTCTTACTGCCTATAA  542

seq1  TGAGGGTCATTCTACATTTGTTAAATATTTCTAATTTTAATTTGTTTTTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCATTCTACATTTGTTAAATATTTCTAATTTTAATTTGTTTTTG  592

seq1  TTTGATATTATTTTTGTTTGATTGATTTTCTTAGCATTAGAATGTTGAAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATTATTTTTGTTTGATTGATTTTCTTAGCATTAGAATGTTGAAC  642

seq1  TCATGAACACTGAGTTCAGTGTTCTACCACTGAATGATATCGCCAGTCAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACACTGAGTTCAGTGTTCTACCACTGAATGATATCGCCAGTCAT  692

seq1  TCATATATATACATACTCAGTATAATTTTCAGACTGGTCTGGAACTTGTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATATACATACTCAGTATAATTTTCAGACTGGTCTGGAACTTGTG  742

seq1  TAATAGTCCAGGATGCCTTATTAACATTCCTCCTGCCTTTGTCTCCCAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCCAGGATGCCTTATTAACATTCCTCCTGCCTTTGTCTCCCAGG  792

seq1  TGTTGATGTTTAGGCAAAACTATTACCACAGCCTTCTGACCTGTGTTGTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGTTTAGGCAAAACTATTACCACAGCCTTCTGACCTGTGTTGTG  842

seq1  AACTGTCCTATATATTAGGTCAGCAATGTGGTCAAACCTACTTATATGCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCTATATATTAGGTCAGCAATGTGGTCAAACCTACTTATATGCC  892

seq1  AATAAATTTTCAGCACTTCCTTTTAGTTTACTTTAAAATGCTCCAGGGCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTTCAGCACTTCCTTTTAGTTTACTTTAAAATGCTCCAGGGCT  942

seq1  AACTTTAAATTACATTTTATCAATAAGAATAAATGTATTTTGAAATATAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAATTACATTTTATCAATAAGAATAAATGTATTTTGAAATATAA  992

seq1  ATAAACTCTCTCTATCCAACTCTAGTTTTAGTAAAAAGTTAGAACTCACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCTCTCTATCCAACTCTAGTTTTAGTAAAAAGTTAGAACTCACT  1042

seq1  ATTCCAATGCTGTAGCAGAGACTGCATCTCAGATTTATTTCCAGCAGTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATGCTGTAGCAGAGACTGCATCTCAGATTTATTTCCAGCAGTTT  1092

seq1  TAAAGAATTC  1102
      ||||||||||
seq2  TAAAGAATTC  1102


seq1: chr14_116800880_116801965
seq2: B6Ng01-302M11.g_70_1152

seq1  GAATTCCTGATCTCTAGGAAGAATTTTAATTGCTGTGGAATTCTGATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTCTAGGAAGAATTTTAATTGCTGTGGAATTCTGATATG  50

seq1  TACTACAAACTACTTAAAATCAAGTTCCCCAACATCTTCTATTCACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAAACTACTTAAAATCAAGTTCCCCAACATCTTCTATTCACAAAA  100

seq1  GTCGAAAAATTGAACTTTTCTCTTTTATGAAATGTGACAGATTTCCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAAAATTGAACTTTTCTCTTTTATGAAATGTGACAGATTTCCTCAG  150

seq1  CCTGAAAAGGCACTGGGCATATACCCTTGGCATCTTCCATTTCTTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGGCACTGGGCATATACCCTTGGCATCTTCCATTTCTTTTTGT  200

seq1  TGAAAATGAGGTACCTAGCAATTTACGCATTGGGGTTTTAATGAGCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAGGTACCTAGCAATTTACGCATTGGGGTTTTAATGAGCCACA  250

seq1  GTGTTAGAAGGCTATGAACTGAGTAATGTTATTTGTTTGTGGTAGTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAAGGCTATGAACTGAGTAATGTTATTTGTTTGTGGTAGTGTCC  300

seq1  TGCAGCTGCAGTGTTTTATACAGCACAGTGGGAGACAAACAAGACAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGCAGTGTTTTATACAGCACAGTGGGAGACAAACAAGACAGCTC  350

seq1  TTTAATCAGCTTCACTACTAAATGCAGCAGAACCATTTTAGGAAGCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAGCTTCACTACTAAATGCAGCAGAACCATTTTAGGAAGCAATG  400

seq1  GCATTTCACAAAAAAAGAGAATGCAAAACATAAAGTGTTATTTTCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCACAAAAAAAGAGAATGCAAAACATAAAGTGTTATTTTCCACAG  450

seq1  ATAACTAGAAAGGAAGTGGGGAAGAAAGCAGAACTGTTCAAATAGAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGAAAGGAAGTGGGGAAGAAAGCAGAACTGTTCAAATAGAGACT  500

seq1  GATAAATAAAGACTTCTTGGCATTTAAGTCACTGAAGAACAAGTCCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAAAGACTTCTTGGCATTTAAGTCACTGAAGAACAAGTCCTTGG  550

seq1  AGCTGGTTCTTGATTCAAGTGCAGCAATTGGAATCAATTGGAGCATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTCTTGATTCAAGTGCAGCAATTGGAATCAATTGGAGCATATTT  600

seq1  TACCAACAGGTTTCTCTCCTAACATATTTTTCTATAGTGAAGCAGTAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACAGGTTTCTCTCCTAACATATTTTTCTATAGTGAAGCAGTAGTG  650

seq1  ACTGATAATTTCATGCCTTCTGAAAGGCCACATTGAAGGCTAATAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAATTTCATGCCTTCTGAAAGGCCACATTGAAGGCTAATAACCAA  700

seq1  ATTTGGGATTAATCTCCTACCCTGGAAATTTCAAGGATTATACGCTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGATTAATCTCCTACCCTGGAAATTTCAAGGATTATACGCTAATA  750

seq1  ACATCTTCCCTACCTCTGTATCTCTCTTCATGTTTTCCCCTCTTAGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTCCCTACCTCTGTATCTCTCTTCATGTTTTCCCCTCTTAGGGCT  800

seq1  GTCCTCATGACTTCTTGCCTAAATATTTTCAACTGGTCTCTAC-TTTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCCTCATGACTTCTTGCCTAAATATTTTCAACTGGTCTCTACTTTTTCC  850

seq1  TTGGATCTCTTACACTTAGGATGAACG-AGGACTAGATCTGACCCTAGCA  898
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TTGGATCTCTTACACTTAGGATGAACGAAGGACTAGATCTGACCTTAGCA  900

seq1  TCCTTCTGCTCCAGAGTTTTCACGTGTATGAATCTCCTGTAAGATTCCCA  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCTTCTGCTCCAGAGTTTTCACGTGTATGAATCTTCTGTAAGATTCCCA  950

seq1  TCAAACGTACATCCTTCTGGTTGAAACCCATAATTGCAGGTTCTTTTTTT  998
      || ||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TC-AACGTACATCCTTCTGGTTGAAACCCATAATTGCAGGTCTTTTTTTT  999

seq1  TTTTTCTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG-  1047
      |||| || |||  |||||||| | ||| |||||||||||| |  ||||| 
seq2  TTTTCCTCCCA--TTTTATTA-GAATTAAGCTCATTTACAATGACAATGC  1046

seq1  CTATACCAAAAGTCCCCCATA-TCCACCCACCCCCAATCC  1086
      |||||||  |||| ||||||| |||||||| |||| ||||
seq2  CTATACC--AAGT-CCCCATATTCCACCCAACCCCTATCC  1083


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