BAC Information

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BAC

Clone NameB6Ng01-303D11
Chromosome14 (Build37)4 (Build37)
Map Location 99,461,953 - 99,462,276119,737,796 - 119,738,314
singlet/doubletsingletsinglet
Overlap gene6720463M24Rik
Upstream geneDach1, LOC635593, LOC619716, LOC100043787, 2410129H14Rik
Downstream geneDis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303D11.bB6Ng01-303D11.g
ACCGA097071GA097072
length989513
definitionB6Ng01-303D11.b B6Ng01-303D11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,461,953 - 99,462,276)(119,737,796 - 119,738,314)
sequence
gaattccaggctagcctggtgtactggctagttttgtgtcaacttgacac
agctggagttatcacagagaaaggaacttcagttgaggaaatgccttcat
gagatccaactgtaaggcattttctcaattagtgatcaagggggaaaggt
cccttgtgggtgggaccatctctgggctggtggtcttgggttctataaga
gagcaggctgagcaagccaggtgaggcaagccagtaatgaacatccctcc
atggcctctgcatcagctcctgcttcctgacctgcttgagttccagtcct
gacatcctttggtgatgaacagcagtatggaaatgtaagccgaataaacc
ctttcctccccaacttgcttcttgatcatgatgtttgtgcaggaatagaa
accctgactaagacacctaggctatgtatcaagaccctgtctcagaaaac
caaaatcaggggccagtgagatggctcagtgggcaaaggtacttgccaca
caagcctgatgacctggatttaatccccagagcctgcgtagagatggaaa
gagaatcaggtctatggcatcgttctctaacctccacacatgcactatga
cacactcatgcaaaaaaaaaaaaatcaaaataagaaaacaaacaaacagg
agtctaatcctgttgagaccagccgttcccacatggtggcttcttgttac
cgggtgactgttcccacttactggactcctagcctgctacctgtctcaag
atctttactccttttaaccctctgtagggggtctcttcatggaccctttg
cttcagtgtcaccttcttagaggactcactctaccaccataattagaaat
aaatgtcaccctctgcctctccttcacaccattttcctccatagatctta
tccatggatctgcccactgtaggctttagtgctttctaccaaatataccc
tgagctgctaccgcccttccctgcccttggagggagtgg

cctggtgccttgattaggaattccagccttcccatgtctccgcccctcag
tctccacctcacctctgctaaaggacacaacaatgtctcacaaggaccca
ggcctctgatatattaacctgtttcccaggcttgtccttccatgcccaat
cctaagtcaccttcataccctgccctgtcataaagcccctgcccggaggc
atggaagggtgtcaggtctggcctctcatgattacctggagagttccaaa
ctctaggggctgagtacataggcaagtgaggtccctgggctcctatatgt
gtttgcatgcatatctccatcttgggcgttaggagtgggctgtgacatgg
gtgggggtgtggcattggaagctctttgggtaagagttaaatcctagggt
gttttgtctgctacaagctatgtcatcatcatcatccaaggagctggtag
ggctgaaggagagagcacctgctttcaaaaaggaaggaaggaaggaaggg
agggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99461953_99462276
seq2: B6Ng01-303D11.b_159_528 (reverse)

seq1  CCCACTGAGCCATCTCACCAGCCCC-------------------------  25
      ||||||||||||||||||  |||||                         
seq2  CCCACTGAGCCATCTCACTGGCCCCTGATTTTGGTTTTCTGAGACAGGGT  50

seq1  ---------------------CTTAGTCAGGGTTTCTATTCCTGCACAAA  54
                           |||||||||||||||||||||||||||||
seq2  CTTGATACATAGCCTAGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAA  100

seq1  CATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACA  104
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGATCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACA  150

seq1  CTTCCATGCTGCTGTTCATCACTAAAGGAAGTCAGGACTGGAACTCAAGC  154
       |||||| |||||||||||||| |||||| ||||||||||||||||||||
seq2  TTTCCATACTGCTGTTCATCACCAAAGGATGTCAGGACTGGAACTCAAGC  200

seq1  AGGTCAGGGAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTAC  204
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  AGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCATTAC  250

seq1  TGGCTTGCCTCTCCTGGCTTACTCAGCCTGCTCTCTTATAGAACCCAAGA  254
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  TGGCTTGCCTCACCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGA  300

seq1  CTACCAGCCCAGAGATGGCACCACCCACAAGGGGCCTTTCCCCCTTGATC  304
      | ||||||||||||||||  ||||||||||||| ||||||||||||||||
seq2  CCACCAGCCCAGAGATGGTCCCACCCACAAGGGACCTTTCCCCCTTGATC  350

seq1  ACTAATTGAGAAAATGCCTT  324
      ||||||||||||||||||||
seq2  ACTAATTGAGAAAATGCCTT  370


seq1: chr4_119737796_119738314
seq2: B6Ng01-303D11.g_64_582

seq1  GAATTCCCTGGTGCCTTGATTAGGAATTCCAGCCTTCCCATGTCTCCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGTGCCTTGATTAGGAATTCCAGCCTTCCCATGTCTCCGCC  50

seq1  CCTCAGTCTCCACCTCACCTCTGCTAAAGGACACAACAATGTCTCACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTCTCCACCTCACCTCTGCTAAAGGACACAACAATGTCTCACAAG  100

seq1  GACCCAGGCCTCTGATATATTAACCTGTTTCCCAGGCTTGTCCTTCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGCCTCTGATATATTAACCTGTTTCCCAGGCTTGTCCTTCCATG  150

seq1  CCCAATCCTAAGTCACCTTCATACCCTGCCCTGTCATAAAGCCCCTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCCTAAGTCACCTTCATACCCTGCCCTGTCATAAAGCCCCTGCCC  200

seq1  GGAGGCATGGAAGGGTGTCAGGTCTGGCCTCTCATGATTACCTGGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATGGAAGGGTGTCAGGTCTGGCCTCTCATGATTACCTGGAGAGT  250

seq1  TCCAAACTCTAGGGGCTGAGTACATAGGCAAGTGAGGTCCCTGGGCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTCTAGGGGCTGAGTACATAGGCAAGTGAGGTCCCTGGGCTCCT  300

seq1  ATATGTGTTTGCATGCATATCTCCATCTTGGGCGTTAGGAGTGGGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTTTGCATGCATATCTCCATCTTGGGCGTTAGGAGTGGGCTGTG  350

seq1  ACATGGGTGGGGGTGTGGCATTGGAAGCTCTTTGGGTAAGAGTTAAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTGGGGGTGTGGCATTGGAAGCTCTTTGGGTAAGAGTTAAATCC  400

seq1  TAGGGTGTTTTGTCTGCTACAAGCTATGTCATCATCATCATCCAAGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTTTTGTCTGCTACAAGCTATGTCATCATCATCATCCAAGGAGC  450

seq1  TGGTAGGGCTGAAGGAGAGAGCACCTGCTTTCAAAAAGGAAGGAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGCTGAAGGAGAGAGCACCTGCTTTCAAAAAGGAAGGAAGGAAG  500

seq1  GAAGGGAGGGAGGGAGGGA  519
      |||||||||||||||||||
seq2  GAAGGGAGGGAGGGAGGGA  519


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