BAC Information

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BAC

Clone NameB6Ng01-303J21
Chromosome14 (Build37)
Map Location 85,199,308 - 85,200,474
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303J21.bB6Ng01-303J21.g
ACCGA097375GA097376
length1,1601,163
definitionB6Ng01-303J21.b B6Ng01-303J21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgcagaaaattgctaactatatttaataattgcgtttagaatg
ttaaataaagacactttaattttttagatatttattaatttttatgtatg
tgaattatgtatatctgtgtacaaacatgctggtacttgaggagatagtg
agccttggtgctgggaatggaacccaagtccttcgcaacaagtgctctta
accactgagccaactcttcagactttggtgtttgtttgtttgtttatttc
tgttttgggggagaaagagtcttatcataatctgtcttacctccagttca
tttatacctacctcttacctccatgacaacctcagtatacaatttgggga
aaccatagaaattctgttttctgaaaaataatgatggcccagccatctaa
aatctgttacagttatgtcaatctgtaaatgtatgatatttgagagaact
gagacaaaaagtgtgaagagaccaaagatgagcaataaaactgttggaca
agacaagcaaggctctgatatcctgagtctaggagtttggaggtactgtt
cacagagaaagaccagggaaataatacttaatgtattctgaatgtaatct
tggatgaagactctggagcaaatatctcagaaaataattctgagaaagtc
aaaagaaactttcaggtcgaggactctatcttttactttatttgagacaa
gttttcatttttgatcttagccactgcccttgctctcatttgcaaaacaa
atttagtttcctgagtatttaaatctttggcaatgacattttgaggaact
ttacttagctgaattttaaactcttacagtttatgtttcaaaaccaaatt
ataagaggatgaatgtgtccacaacaattaccaatctccaaagggttatc
acacaaggcacaacctctttagtacttctgaaacttaaattatgaatgga
aaagaaagtctctgtcccaaacataataattaacatgtatatctttcatg
ttactttctcatgtaaaatcttcatcaccaacatctgatggagagtataa
aagaaacaggaaagaatagataggaggaattaaaatagagagtggatgct
ttgttagaattgaggcacttactatgatgacaaggtgtgcacattccttc
ctcataattt
gaattccagatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
tagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccatttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcccttttttctaggc
ttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttcttct
tggaggcactcagcgctatgagttccctccttagaaatgccttcatgtgt
ccattagggtttgggtaacgtgtggcttcatttcataactctaaaaggtc
tttaatttcttcttaatccttccttggaccagtatcattgagaagagagt
gtattcagttccacgtaaggtggcctttccataattaatgtgctgtgtaa
tggaagagactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85199308_85200474
seq2: B6Ng01-303J21.b_45_1204

seq1  GAATTCCTGCAGAAAATTGCTAACTATATTTAATAATTGCGTTTAGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGAAAATTGCTAACTATATTTAATAATTGCGTTTAGAATG  50

seq1  TTAAATAAAGACACTTTAATTTTTTAGATATTTATTAATTTTTATGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAGACACTTTAATTTTTTAGATATTTATTAATTTTTATGTATG  100

seq1  TGAATTATGTATATCTGTGTACAAACATGCTGGTACTTGAGGAGATAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATGTATATCTGTGTACAAACATGCTGGTACTTGAGGAGATAGTG  150

seq1  AGCCTTGGTGCTGGGAATGGAACCCAAGTCCTTCGCAACAAGTGCTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGTGCTGGGAATGGAACCCAAGTCCTTCGCAACAAGTGCTCTTA  200

seq1  ACCACTGAGCCAACTCTTCAGACTTTGGTGTTTGTTTGTTTGTTTATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGCCAACTCTTCAGACTTTGGTGTTTGTTTGTTTGTTTATTTC  250

seq1  TGTTTTGGGGGAGAAAGAGTCTTATCATAATCTGTCTTACCTCCAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGGGGAGAAAGAGTCTTATCATAATCTGTCTTACCTCCAGTTCA  300

seq1  TTTATACCTACCTCTTACCTCCATGACAACCTCAGTATACAATTTGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCTACCTCTTACCTCCATGACAACCTCAGTATACAATTTGGGGA  350

seq1  AACCATAGAAATTCTGTTTTCTGAAAAATAATGATGGCCCAGCCATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAGAAATTCTGTTTTCTGAAAAATAATGATGGCCCAGCCATCTAA  400

seq1  AATCTGTTACAGTTATGTCAATCTGTAAATGTATGATATTTGAGAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTACAGTTATGTCAATCTGTAAATGTATGATATTTGAGAGAACT  450

seq1  GAGACAAAAAGTGTGAAGAGACCAAAGATGAGCAATAAAACTGTTGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAAAGTGTGAAGAGACCAAAGATGAGCAATAAAACTGTTGGACA  500

seq1  AGACAAGCAAGGCTCTGATATCCTGAGTCTAGGAGTTTGGAGGTACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCAAGGCTCTGATATCCTGAGTCTAGGAGTTTGGAGGTACTGTT  550

seq1  CACAGAGAAAGACCAGGGAAATAATACTTAATGTATTCTGAATGTAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAAGACCAGGGAAATAATACTTAATGTATTCTGAATGTAATCT  600

seq1  TGGATGAAGACTCTGGAGCAAATATCTCAGAAAATAATTCTGAGAAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAGACTCTGGAGCAAATATCTCAGAAAATAATTCTGAGAAAGTC  650

seq1  AAAAGAAACTTTCAGGTCGAGGACTCTATCTTTTACTTTATTTGAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTTTCAGGTCGAGGACTCTATCTTTTACTTTATTTGAGACAA  700

seq1  GTTTTCATTTTTGATCTTAGCCACTGCCCTTGCTCTCATTTGCAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTTTTGATCTTAGCCACTGCCCTTGCTCTCATTTGCAAAACAA  750

seq1  ATTTAGTTTCCTGAGTATTTAAATCTTTGGCAATGACATTTTGAGGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTCCTGAGTATTTAAATCTTTGGCAATGACATTTTGAGGAACT  800

seq1  TTACTTAGCTGAATTTTAAACTCTTACAGTTTATGTTTCAAAACCAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGCTGAATTTTAAACTCTTACAGTTTATGTTTCAAAACCAAATT  850

seq1  ATAAGAGGATGAATGTGTCCACAACAATTACCAATCTCCAAA-GGTTATC  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAAGAGGATGAATGTGTCCACAACAATTACCAATCTCCAAAGGGTTATC  900

seq1  ACACAAGGCACAACCTCTTTAGTACTTCTGAAACTTAAATTATGAATGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACACAAGGCACAACCTCTTTAGTACTTCTGAAACTTAAATTATGAATGG-  949

seq1  AAAAGAAAGTCTCTGTCCCAAACAT-ATAATTAAACATGTAATATCTTTC  998
      ||||||||||||||||||||||||| |||||| ||||||| |||||||||
seq2  AAAAGAAAGTCTCTGTCCCAAACATAATAATT-AACATGT-ATATCTTTC  997

seq1  ATGTTAC-TTCTCATGTAAAATCTTCATCACCAAACATCTGATGGAGAAG  1047
      ||||||| |||||||||||||||||||||||| |||||||||||||| ||
seq2  ATGTTACTTTCTCATGTAAAATCTTCATCACC-AACATCTGATGGAG-AG  1045

seq1  TATAAAAGAAAACAAGGAAAGAATAGATAGAAAGAAATTAAAATAAGAGA  1097
      |||||||||||   ||||||||||||||||  || ||||||||| |||||
seq2  TATAAAAGAAA--CAGGAAAGAATAGATAG-GAGGAATTAAAAT-AGAGA  1091

seq1  GTGGAGTGCTTTGTTAGATTTGA-GCACTACCCTATGATGAACAAGTGTG  1146
      ||||| |||||||||||| |||| |||||   |||||||||  | |||||
seq2  GTGGA-TGCTTTGTTAGAATTGAGGCACT-TACTATGATGACAAGGTGTG  1139

seq1  CACATTTCCTTCTCATAATTT  1167
      |||||| | | ||||||||||
seq2  CACATTCCTTCCTCATAATTT  1160