BAC Information

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BAC

Clone NameB6Ng01-303L04
Chromosome14 (Build37)
Map Location 47,543,103 - 47,683,556
singlet/doubletdoublet
Overlap geneSamd4
Upstream geneLOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1
Downstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303L04.bB6Ng01-303L04.g
ACCGA097437GA097438
length1,122979
definitionB6Ng01-303L04.b B6Ng01-303L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,682,418 - 47,683,556)(47,543,103 - 47,544,063)
sequence
gaattcatcacaataaagtaaaacacaaagagcctctgctttagctgggc
caacttactgttgtcttgggaagaactgacttagaaaatgcccaaagtag
atacaatagtctgtgccctcaagacactatttttctttttttgaaactta
gtataaatctccgaaagctatatcagctacttctagaagctagaaccata
tgcagtagttgtactccataacttccctgcctggtgtttctttcaccttc
cctggccccctgtgggataaagggcatcctggactaccagtattaccact
gttgtgggatagctgccagtcatttctccataagaaacatcacaacacgg
aggacccaaaccttgcctagatcccaggataaaggaaatgccaaggtaca
actgaaacaaaccccaggcatggtgttttagagttcagaaaattactgga
ctgaagagctactgaatcattactttgctaattgcaactaaaataaatca
tttacccaaagtctcaagtcagaatttttgagctgataagacctgagatc
atctttccctaaccctactcaccatacagatggcagcgttgtgccattaa
gtctagatcacagagaaagaatgtggtcaagtggggtctagaactcaggt
ccttctgcagcccagctcttagctacattgcagcaaggactacagagatc
accagccatagagctaagtaaatagagattgagagtattttgagattcca
aggtactgggtaagtatcattcatactttctatagggcatcatcatattg
ctaatcatattggtcacaagattataaagtggtttactctgaggcactga
tgagccggccacacacattcaaatataggtgggaacttcgggttttccaa
tgtttaaagtagatagccaggactgatggaagacagtttgcctcccagga
aaaccaaacccaggaaaaccaaacccaggctcaggagtgtggacagggtt
gggtctccttaaaaacaaaaaagtcagcatagcagtgatcatggcctgct
gctggagtgatctgtgcagagcaaagatggaggattctggattagaactg
aactcagttaagacagaaccaa
gaattcagaatgtcttggagaggttgagcttatttgtaggattaaagcca
ttagtctttgaaatacagtcaccctgtcctcatgtggttttatttgtgct
ctgaggcatctattggctctccaagaaatgagagcctctggtaccccacc
cctgctccccacacccctctttttaaagacaaagtcttgctatagagcct
aggctggccttgaactcaatatatagcacaggctgacactgaacctatca
tgtagccaggctggccttgttctctccaccttatatctccagcatggtga
atgcttacgttataggggtgtgcccctcacccccaaccaggctatattcc
aatcctttgacctggtgctacagatagaaaggggactatctcaggtggga
aggtgatgtgggctggggcttcaggtttttaatccccagccagccggtga
gtttctctgtcttttcatctttctccagcctggtgtgcatctagctacaa
tgtgacgtgcccctcttccaaaactagatcacttcccttctgtttttgaa
tagttcttaaacgtttccaaaataaacaagggtgtttatagcattttctt
ttccaaacaaacttaaaggcctgtttctccaaatgggaaggaaactgaaa
tgcagccaagtcagcgggtccactttgaggtgctgagagtcatcacagct
aaaatgcgtgctgagcccttacccgttcagagagggaacagccgccattg
ggaaggctgggaaggccctctggccttgagctcacacagtgccgggtata
ggccccagaaaggccttagctctaccggaaggattgtcgcacccagccaa
gctctgtcaccacccgtggctgacatccactcactcttctctgtcagctc
cagctctgagaggtacttattttgaggcacatttcctttgaactttggtt
tccatggcttatatatacctatgattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_47682418_47683556
seq2: B6Ng01-303L04.b_47_1168 (reverse)

seq1  TTGGTGTCTGTCCTTAACTGAATGTTCAGTTCTAATTCCCAGAAATCTTC  50
      ||||| ||||| |||||||||  |||||||||||||  |||| |||| ||
seq2  TTGGT-TCTGT-CTTAACTGA--GTTCAGTTCTAAT--CCAG-AATCCTC  43

seq1  CATCTTTGCTCTGCACAAGATCACT-CAGCAGCAGGCCAATGATCACCTG  99
      |||||||||||||||| |||||||| |||||||||||| ||||||| |||
seq2  CATCTTTGCTCTGCAC-AGATCACTCCAGCAGCAGGCC-ATGATCA-CTG  90

seq1  CTATGCCTGACTTTTTTTTTTTTTTTTTTTAAGGAGA-CCAACCCTGTCC  148
      ||||| |||||       |||||| |||||||||||| ||||||||||||
seq2  CTATG-CTGAC-------TTTTTTGTTTTTAAGGAGACCCAACCCTGTCC  132

seq1  ACACTCCCTGAGCCTGGGTTTGGTTTTCCTGGGTTTGGTTTTCCTGGGAG  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACT-CCTGAGCCTGGGTTTGGTTTTCCTGGGTTTGGTTTTCCTGGGAG  181

seq1  GCAAACTGTCTTCCATCAGTCCTGGCTATCTACTTTAAACATTGGAAAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGTCTTCCATCAGTCCTGGCTATCTACTTTAAACATTGGAAAAC  231

seq1  CCGAAGTTCCCACCTATATTTGAATGTGTGTGGCCGGCTCATCAGTGCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGTTCCCACCTATATTTGAATGTGTGTGGCCGGCTCATCAGTGCCT  281

seq1  CAGAGTAAACCACTTTATAATCTTGTGACCAATATGATTAGCAATATGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAACCACTTTATAATCTTGTGACCAATATGATTAGCAATATGAT  331

seq1  GATGCCCTATAGAAAGTATGAATGATACTTACCCAGTACCTTGGAATCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTATAGAAAGTATGAATGATACTTACCCAGTACCTTGGAATCTC  381

seq1  AAAATACTCTCAATCTCTATTTACTTAGCTCTATGGCTGGTGATCTCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTCTCAATCTCTATTTACTTAGCTCTATGGCTGGTGATCTCTGT  431

seq1  AGTCCTTGCTGCAATGTAGCTAAGAGCTGGGCTGCAGAAGGACCTGAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTGCTGCAATGTAGCTAAGAGCTGGGCTGCAGAAGGACCTGAGTT  481

seq1  CTAGACCCCACTTGACCACATTCTTTCTCTGTGATCTAGACTTAATGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCCCACTTGACCACATTCTTTCTCTGTGATCTAGACTTAATGGCA  531

seq1  CAACGCTGCCATCTGTATGGTGAGTAGGGTTAGGGAAAGATGATCTCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTGCCATCTGTATGGTGAGTAGGGTTAGGGAAAGATGATCTCAGG  581

seq1  TCTTATCAGCTCAAAAATTCTGACTTGAGACTTTGGGTAAATGATTTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCAGCTCAAAAATTCTGACTTGAGACTTTGGGTAAATGATTTATT  631

seq1  TTAGTTGCAATTAGCAAAGTAATGATTCAGTAGCTCTTCAGTCCAGTAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGCAATTAGCAAAGTAATGATTCAGTAGCTCTTCAGTCCAGTAAT  681

seq1  TTTCTGAACTCTAAAACACCATGCCTGGGGTTTGTTTCAGTTGTACCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAACTCTAAAACACCATGCCTGGGGTTTGTTTCAGTTGTACCTTG  731

seq1  GCATTTCCTTTATCCTGGGATCTAGGCAAGGTTTGGGTCCTCCGTGTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCTTTATCCTGGGATCTAGGCAAGGTTTGGGTCCTCCGTGTTGT  781

seq1  GATGTTTCTTATGGAGAAATGACTGGCAGCTATCCCACAACAGTGGTAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCTTATGGAGAAATGACTGGCAGCTATCCCACAACAGTGGTAAT  831

seq1  ACTGGTAGTCCAGGATGCCCTTTATCCCACAGGGGGCCAGGGAAGGTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGTCCAGGATGCCCTTTATCCCACAGGGGGCCAGGGAAGGTGAA  881

seq1  AGAAACACCAGGCAGGGAAGTTATGGAGTACAACTACTGCATATGGTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACCAGGCAGGGAAGTTATGGAGTACAACTACTGCATATGGTTCT  931

seq1  AGCTTCTAGAAGTAGCTGATATAGCTTTCGGAGATTTATACTAAGTTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAGAAGTAGCTGATATAGCTTTCGGAGATTTATACTAAGTTTCA  981

seq1  AAAAAAGAAAAATAGTGTCTTGAGGGCACAGACTATTGTATCTACTTTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAATAGTGTCTTGAGGGCACAGACTATTGTATCTACTTTGG  1031

seq1  GCATTTTCTAAGTCAGTTCTTCCCAAGACAACAGTAAGTTGGCCCAGCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTAAGTCAGTTCTTCCCAAGACAACAGTAAGTTGGCCCAGCTA  1081

seq1  AAGCAGAGGCTCTTTGTGTTTTACTTTATTGTGATGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGGCTCTTTGTGTTTTACTTTATTGTGATGAATTC  1122

seq1: chr14_47543103_47544063
seq2: B6Ng01-303L04.g_66_1044

seq1  GAATTCAGAATGTCTTGGAGAGGTTGAGCTTATTTGTAGGATTAAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATGTCTTGGAGAGGTTGAGCTTATTTGTAGGATTAAAGCCA  50

seq1  TTAGTCTTTGAAATACAGTCACCCTGTCCTCATGTGGTTTTATTTGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTTGAAATACAGTCACCCTGTCCTCATGTGGTTTTATTTGTGCT  100

seq1  CTGAGGCATCTATTGGCTCTCCAAGAAATGAGAGCCTCTGGTACCCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATCTATTGGCTCTCCAAGAAATGAGAGCCTCTGGTACCCCACC  150

seq1  CCTGCTCCCCACACCCCTCTTTTTAAAGACAAAGTCTTGCTATAGAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCCCACACCCCTCTTTTTAAAGACAAAGTCTTGCTATAGAGCCT  200

seq1  AGGCTGGCCTTGAACTCAATATATAGCACAGGCTGACACTGAACCTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTGAACTCAATATATAGCACAGGCTGACACTGAACCTATCA  250

seq1  TGTAGCCAGGCTGGCCTTGTTCTCTCCACCTTATATCTCCAGCATGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCAGGCTGGCCTTGTTCTCTCCACCTTATATCTCCAGCATGGTGA  300

seq1  ATGCTTACGTTATAGGGGTGTGCCCCTCACCCCCAACCAGGCTATATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACGTTATAGGGGTGTGCCCCTCACCCCCAACCAGGCTATATTCC  350

seq1  AATCCTTTGACCTGGTGCTACAGATAGAAAGGGGACTATCTCAGGTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTGACCTGGTGCTACAGATAGAAAGGGGACTATCTCAGGTGGGA  400

seq1  AGGTGATGTGGGCTGGGGCTTCAGGTTTTTAATCCCCAGCCAGCCGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGTGGGCTGGGGCTTCAGGTTTTTAATCCCCAGCCAGCCGGTGA  450

seq1  GTTTCTCTGTCTTTTCATCTTTCTCCAGCCTGGTGTGCATCTAGCTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTCTTTTCATCTTTCTCCAGCCTGGTGTGCATCTAGCTACAA  500

seq1  TGTGACGTGCCCCTCTTCCAAAACTAGATCACTTCCCTTCTGTTTTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACGTGCCCCTCTTCCAAAACTAGATCACTTCCCTTCTGTTTTTGAA  550

seq1  TAGTTCTTAAACGTTTCCAAAATAAACAAGGGTGTTTATAGCATTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTAAACGTTTCCAAAATAAACAAGGGTGTTTATAGCATTTTCTT  600

seq1  TTCCAAACAAACTT-AAGGCCTGTTTCTCCAAATGGGAAGGAAACTGAAA  649
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCCAAACAAACTTAAAGGCCTGTTTCTCCAAATGGGAAGGAAACTGAAA  650

seq1  TGCAGCCAAGTCAGCGGGTCCAC-TTGAGGTGCTGAGAGTCATCACAGCT  698
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCAGCCAAGTCAGCGGGTCCACTTTGAGGTGCTGAGAGTCATCACAGCT  700

seq1  AAAATGCGTGCTGAG-CCTTA-CCGTTCAGAGAGGGAACAGCCGCCA-TG  745
      ||||||||||||||| ||||| ||||||||||||||||||||||||| ||
seq2  AAAATGCGTGCTGAGCCCTTACCCGTTCAGAGAGGGAACAGCCGCCATTG  750

seq1  GGAAGGCTGGGAAGGCCCTCTGGCC-TGAGCTCACACAGTGCCGGGTATA  794
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAAGGCTGGGAAGGCCCTCTGGCCTTGAGCTCACACAGTGCCGGGTATA  800

seq1  -GCCCCAGAAAGGCCTTAGCTCTACCGG-AGGA-TGTCGCAGCCAGCCAA  841
       ||||||||||||||||||||||||||| |||| ||||||| ||||||||
seq2  GGCCCCAGAAAGGCCTTAGCTCTACCGGAAGGATTGTCGCACCCAGCCAA  850

seq1  GC-CTGGCACCA-CCGTGGCTGACATCAACTCACTCTTCTCTGTCAGCTC  889
      || ||| ||||| |||||||||||||| ||||||||||||||||||||||
seq2  GCTCTGTCACCACCCGTGGCTGACATCCACTCACTCTTCTCTGTCAGCTC  900

seq1  CAGCTCTGAGA-GTACTTATTTTGAGGCACATTT-CTTTGAACTTTGG-T  936
      ||||||||||| |||||||||||||||||||||| ||||||||||||| |
seq2  CAGCTCTGAGAGGTACTTATTTTGAGGCACATTTCCTTTGAACTTTGGTT  950

seq1  TCCAT-GCT--TATATAGCTA-GATTGTT  961
      ||||| |||  |||||| ||| |||||||
seq2  TCCATGGCTTATATATACCTATGATTGTT  979