BAC Information

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BAC

Clone NameB6Ng01-304I02
Chromosome14 (Build37)
Map Location 111,996,235 - 112,088,175
singlet/doubletdoublet
Overlap geneSlitrk5
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304I02.bB6Ng01-304I02.g
ACCGA098046GA098047
length8671,134
definitionB6Ng01-304I02.b B6Ng01-304I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,087,310 - 112,088,175)(111,996,235 - 111,997,374)
sequence
gaattctagaatcataactatacatcttagccattgattatcatgtggct
tgacataatattaaagaattttaaatataatattattatctgtggtacaa
cttagttcacattcaaggaagggagcaattataatcatatgattcaagtt
gatagtaaaaagaaatatcatatccagagtacacttacataataaacata
tttttgcctgaaaagtaatagaggtagatttttaaaatatcatacattat
aggctaattttatattcctcgagaaaaactttaaaaacaggaacccatga
agagctggtgggtttcatcacagtatttggtattttaggaggtatacaac
ctactgaaagtaagttaccagcaaagtaagcttaatcaaaatatggatct
aatgcactattattatgttcaaatacattgacatcattcttggcacttct
gaatcatatttttaatttcagtctaattataaaaaaaataagtttgccta
gtcatctctttcatcctcaaagacattgatatttcaactgatatttgagt
tttttgttttgttttggttttggttttgttttgttttgttggtttttgtt
gagctggcctttagtactctcttcgagcaatcaaaacttgaacattttgc
aagaagcaaacagtacatgctgtaataatcattttctatggcaataagaa
ttaactccaaataactactgcagctttttcttaggacggtgtgagcatgt
tgggagcccaaccatgccacaaagtaacctaaattatgtttcatcttttg
gtagacttccaagtactttaatagataaacctgacactcatgtatttctg
gcatagtatcatgtttt

gaattctctgagcaacagaccaagaggactacagaaatatatagttccaa
tgaacacatctaaacaactctcccatactttgggctcgaaaccattgctg
ataagggaaaaaggaagattttgagaacaaaaggaccatgaactacactg
tgagataagatctcttaatatcatcagatgccacactaacaaactcatca
acatgattgtccaaatgggatttaaagcagtataagtgtagcaaaaatct
caaattgcatatggtaaagtttataagaactcactcagcgccacacagag
aattttctcaactgagtataactgaaggcaggaaagatgactctcaccaa
ggaggggtatgtcaaatgggaaaaggtcagtcctaaaaatatacattcaa
gcaacatatggactcaaaaacttttatttgggaaaacatgcatgtatatt
taaataaatatatgtatgcaataaccgttggtaaaatgaggctacacact
taaagaagagcagaaaggaagggttatatggaagtatttggaaggaagaa
atggaaaacagaaatgtaattaaaatacaatctcaaaaacaagggaaaaa
ggagctctacacctactataagtcttctaagaactatttttactcgcact
cagccatcatgtaatgaatatgacccaataatgtttctgcacttgagaga
tagcatctttgaaatattctagcaccagccacaaactgactcgtggcaaa
aaaataaaatcatgagtggaaaccactaaaacgaaatcaatcacttccag
aaatgtagggaaagtggcaaaatattttctatagtggcaagacactaatt
tgtattaatgaaatactgcactaataaaaaagtagaacaggtaacattca
ttcattatagaataaaaacattaccaagtagtaatctatgatttaacttt
gtgcacatatgtttcagagccatgtcttctttttttagtgacataagagc
aagttttatttccaaaagttctcctcaacgttttcagtagttttcgaatt
ctttctagtcatgtctatcatgtaagtttttctatgtggtagatttcatc
tatttcatgcttcaatccaatttgtaatgagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112087310_112088175
seq2: B6Ng01-304I02.b_45_911 (reverse)

seq1  AAAACATTGATACTATGCCAGAAATACATGAGTGTCAAGGTTATCTATTA  50
      |||||| |||||||||||||||||||||||||||||| | ||||||||||
seq2  AAAACA-TGATACTATGCCAGAAATACATGAGTGTCAGGTTTATCTATTA  49

seq1  AAAGTTACTTGG-AGTCTACC-AAAGATGAAACATAATTTAGGTTACTTT  98
      ||   ||||||| |||||||| ||||||||||||||||||||||||||||
seq2  AA--GTACTTGGAAGTCTACCAAAAGATGAAACATAATTTAGGTTACTTT  97

seq1  GTGGCATGGTTGGGCT-CCTACATGCTCACACCGTCCTAAG-AAAAGCTG  146
      |||||||||||||||| || ||||||||||||||||||||| ||||||||
seq2  GTGGCATGGTTGGGCTCCCAACATGCTCACACCGTCCTAAGAAAAAGCTG  147

seq1  CAGTAGTTATTTGGAGTTAATTCTTATTGCCATAGAAAATGATTATTACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTATTTGGAGTTAATTCTTATTGCCATAGAAAATGATTATTACA  197

seq1  GCATGTACTGTTTGCTTCTTGCAAAATGTTCAAGTTTTGATTGCTCGAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACTGTTTGCTTCTTGCAAAATGTTCAAGTTTTGATTGCTCGAAG  247

seq1  AGAGTACTAAAGGCCAGCTCAACAAAAACCAACAAAACAAAACAAAACCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTAAAGGCCAGCTCAACAAAAACCAACAAAACAAAACAAAACCA  297

seq1  AAACCAAAACAAAACAAAAAACTCAAATATCAGTTGAAATATCAATGTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAACAAAACAAAAAACTCAAATATCAGTTGAAATATCAATGTCT  347

seq1  TTGAGGATGAAAGAGATGACTAGGCAAACTTATTTTTTTTATAATTAGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATGAAAGAGATGACTAGGCAAACTTATTTTTTTTATAATTAGAC  397

seq1  TGAAATTAAAAATATGATTCAGAAGTGCCAAGAATGATGTCAATGTATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAAAAATATGATTCAGAAGTGCCAAGAATGATGTCAATGTATTT  447

seq1  GAACATAATAATAGTGCATTAGATCCATATTTTGATTAAGCTTACTTTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAATAATAGTGCATTAGATCCATATTTTGATTAAGCTTACTTTGC  497

seq1  TGGTAACTTACTTTCAGTAGGTTGTATACCTCCTAAAATACCAAATACTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACTTACTTTCAGTAGGTTGTATACCTCCTAAAATACCAAATACTG  547

seq1  TGATGAAACCCACCAGCTCTTCATGGGTTCCTGTTTTTAAAGTTTTTCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAACCCACCAGCTCTTCATGGGTTCCTGTTTTTAAAGTTTTTCTC  597

seq1  GAGGAATATAAAATTAGCCTATAATGTATGATATTTTAAAAATCTACCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATATAAAATTAGCCTATAATGTATGATATTTTAAAAATCTACCTC  647

seq1  TATTACTTTTCAGGCAAAAATATGTTTATTATGTAAGTGTACTCTGGATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTTTCAGGCAAAAATATGTTTATTATGTAAGTGTACTCTGGATA  697

seq1  TGATATTTCTTTTTACTATCAACTTGAATCATATGATTATAATTGCTCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTCTTTTTACTATCAACTTGAATCATATGATTATAATTGCTCCC  747

seq1  TTCCTTGAATGTGAACTAAGTTGTACCACAGATAATAATATTATATTTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGAATGTGAACTAAGTTGTACCACAGATAATAATATTATATTTAA  797

seq1  AATTCTTTAATATTATGTCAAGCCACATGATAATCAATGGCTAAGATGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTAATATTATGTCAAGCCACATGATAATCAATGGCTAAGATGTA  847

seq1  TAGTTATGATTCTAGAATTC  866
      ||||||||||||||||||||
seq2  TAGTTATGATTCTAGAATTC  867


seq1: chr14_111996235_111997374
seq2: B6Ng01-304I02.g_67_1200

seq1  GAATTCTCTGAGCAACAGACCAAGAGGACTACAGAAATATATAGTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGCAACAGACCAAGAGGACTACAGAAATATATAGTTCCAA  50

seq1  TGAACACATCTAAACAACTCTCCCATACTTTGGGCTCGAAACCATTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACATCTAAACAACTCTCCCATACTTTGGGCTCGAAACCATTGCTG  100

seq1  ATAAGGGAAAAAGGAAGATTTTGAGAACAAAAGGACCATGAACTACACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAAAAAGGAAGATTTTGAGAACAAAAGGACCATGAACTACACTG  150

seq1  TGAGATAAGATCTCTTAATATCATCAGATGCCACACTAACAAACTCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAGATCTCTTAATATCATCAGATGCCACACTAACAAACTCATCA  200

seq1  ACATGATTGTCCAAATGGGATTTAAAGCAGTATAAGTGTAGCAAAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTGTCCAAATGGGATTTAAAGCAGTATAAGTGTAGCAAAAATCT  250

seq1  CAAATTGCATATGGTAAAGTTTATAAGAACTCACTCAGCGCCACACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCATATGGTAAAGTTTATAAGAACTCACTCAGCGCCACACAGAG  300

seq1  AATTTTCTCAACTGAGTATAACTGAAGGCAGGAAAGATGACTCTCACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCAACTGAGTATAACTGAAGGCAGGAAAGATGACTCTCACCAA  350

seq1  GGAGGGGTATGTCAAATGGGAAAAGGTCAGTCCTAAAAATATACATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTATGTCAAATGGGAAAAGGTCAGTCCTAAAAATATACATTCAA  400

seq1  GCAACATATGGACTCAAAAACTTTTATTTGGGAAAACATGCATGTATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATATGGACTCAAAAACTTTTATTTGGGAAAACATGCATGTATATT  450

seq1  TAAATAAATATATGTATGCAATAACCGTTGGTAAAATGAGGCTACACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATATATGTATGCAATAACCGTTGGTAAAATGAGGCTACACACT  500

seq1  TAAAGAAGAGCAGAAAGGAAGGGTTATATGGAAGTATTTGGAAGGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGAGCAGAAAGGAAGGGTTATATGGAAGTATTTGGAAGGAAGAA  550

seq1  ATGGAAAACAGAAATGTAATTAAAATACAATCTCAAAAACAAGGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACAGAAATGTAATTAAAATACAATCTCAAAAACAAGGGAAAAA  600

seq1  GGAGCTCTACACCTACTATAAGTCTTCTAAGAACTATTTTTACTCGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTACACCTACTATAAGTCTTCTAAGAACTATTTTTACTCGCACT  650

seq1  CAGCCATCATGTAATGAATATGACCCAATAATGTTTCTGCACTTGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCATGTAATGAATATGACCCAATAATGTTTCTGCACTTGAGAGA  700

seq1  TAGCATCTTTGAAATATTCTAGCACCAGCCACAAACTGACTCGTGGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTTTGAAATATTCTAGCACCAGCCACAAACTGACTCGTGGCAAA  750

seq1  AAAATAAAATCATGAGTGGAAACCACTAAAACGAAATCAATCACTTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATCATGAGTGGAAACCACTAAAACGAAATCAATCACTTCCAG  800

seq1  AAATGTAGGGAAAGTGGCAAAATATTTTCTATAGTGGCAAGACACTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGGGAAAGTGGCAAAATATTTTCTATAGTGGCAAGACACTAATT  850

seq1  TGTATTAATGAAATACTGCACTAATAAAAAAGTAGAACAGGTAACATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAATGAAATACTGCACTAATAAAAAAGTAGAACAGGTAACATTCA  900

seq1  TTCATTATAGAATAAAAACATTACCAAGTAAGTAATCTATGATTTAACTT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCATTATAGAATAAAAACATTACCAAGT-AGTAATCTATGATTTAACTT  949

seq1  TGTGCACATATGTTTCAGAGCCATGTCTTC-TTTTTTAGTGACATAAGAG  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGCACATATGTTTCAGAGCCATGTCTTCTTTTTTTAGTGACATAAGAG  999

seq1  CAAG-TTTATTTCCAAAAGTTCTCCTCAAACGTTTCAGGTAGTTTTCGAA  1048
      |||| |||||||||||||||||||||| |||||||   ||||||||||||
seq2  CAAGTTTTATTTCCAAAAGTTCTCCTC-AACGTTTTCAGTAGTTTTCGAA  1048

seq1  TTC-TTCTAGTCCATTGTCTATCATTGTAAAGTTTTCTATTGGTTTGTAG  1097
      ||| ||||||||   ||||||||| |||||  ||||||||    | ||||
seq2  TTCTTTCTAGTC--ATGTCTATCA-TGTAAGTTTTTCTAT---GTGGTAG  1092

seq1  AATTTCATCTATTTCATGCTTCAATCCAATTTGTAGTGAGTCT  1140
       |||||||||||||||||||||||||||||||||| |||||||
seq2  -ATTTCATCTATTTCATGCTTCAATCCAATTTGTAATGAGTCT  1134


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