BAC Information

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BAC

Clone NameB6Ng01-304O24
Chromosome14 (Build37)
Map Location 18,589,028 - 18,709,759
singlet/doubletdoublet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304O24.bB6Ng01-304O24.g
ACCGA098356GA098357
length1,1671,129
definitionB6Ng01-304O24.b B6Ng01-304O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,589,028 - 18,590,207)(18,708,628 - 18,709,759)
sequence
gaattcttgctagaccataaaaatcttactagaccttgtaaatgacaagc
aggtcatgctgtttttcttattaagtagtcctctctctaatgcagagtcc
cctgaccctccagaaaacacttgcagcctgcttctgttttagccaaagta
ttacattgtggcaggtcacacatgctaaggttcagtgatttcttacatat
gtatgtaaccatgaagtcaaaatccagatacaatttagaatctgcctctg
cctctataagattccctcctctggccttttgcagcctgcccttaacctag
gggtaagctctttactggtggctgtggcatgggtcagggacacatggggt
ttgtgtgcagtgcttccatatcaataagctttacaatgtactcattggag
tgtgctagagtacaaggaagtccttttcacttctttccagaggtcacttg
tataagaggaactgtttctagtcaagtgactaatcttagcttttgcaatc
acaaacagcacactttaactacacaaaaagagaattattctgcagatgaa
tgacttcatgcattcccattctctaaaggaggacaccattttttcacaga
caccagttccttctgattaccccacctcagtattcttctgtgttttacct
gaatcagatttctttgttctgtgtatgaatgacacatcccatgtcttctc
gccaactccaaaagttcatgtaattgtgaaagtagccaatacagaaggat
ggagaatttgataaataaccatacgccatcattctttatagaatatttca
gagaaggcaaagtaagccaatacagaaaggtcctgttttacttctatcta
gagagcacctcctttagagtattttctggggccctgtgttaaatctagac
ttgcttccaattaagaatctaaagcagaagtcttagactcttgttttcaa
ccaaattcaatgaataaagtggacttggtggctgtgtgtaatgatgacca
gagctgggggtggtctttctttccagggagataagttctcagactaaaag
gcttctacgacacactagagaataagtagagagtagagacacaaaagatc
tagtaatcattcaggaattcttccatatatgaaaagttccgtcctgaatt
ttaattactgctggaac

gaattcctgcaggtctgggttgttgaagggtcaggggtctcagcccagca
gggctgggctactgtgctcttccctgtcagatctgaaacccaagacctct
gtacattttgtcacttagagaagttctggctggaaggtctccacattaca
gttatggcatttagttagttgtgggaatgcatggaatgagactagaaagc
tgtaagtcttcagttgttgccttctgcctgtgttcctcagggtttccatg
gggaaaagcaatgttgaagttaagttgaagctataaagaatgaataacac
tgtctctaaaaagttatgttaagaaatcagcacttaagtaatcagaattt
tggattaagggtggcatcattaataatacatccatatgccagtaagaatt
tgctctaagaattgctccacagagatgtttttcatcaagcttgtttcttt
ccaaatacacttctctagtttgattcttattttacaaatgtttgggaatt
taattgagttaaaggaatccacaatactgtaggagtaaaagattaaaagg
aggcactatagaattccagagaaaagattcatcacacctcacaagcacat
gtactttctttctctctccctctcagtctctctgtctctgtctctcttcc
tctagggattcttattttattaggtgaattgcacacagtatctaaaagct
attttagtgcgtgactcacctctactcttagaaaacaaagaaacagacat
gatgtttcctgtagagaagcagatgagagaacaactcgggctctcatagt
gttggaaagtgttctagtttgtttttctgatgccacaatagatatcatga
ccaaagcaatcctcagaggaaagcatttaatatatctcacagctcacagc
ccgtgtcaaaggcaagccaacagagggcatcccagcaggaaccctggagt
caaggaactgaagcaagcctcatgggagacccgagtttctgtttttctca
cagctcatggtttacctgtccttcttaacagtcagttctctgcctggaga
ggtacaacccactgtgggctggcctttctgcatcatagcaggcaagaaat
gcccacaggaactgccacaggtcatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18589028_18590207
seq2: B6Ng01-304O24.b_48_1214

seq1  GAATTCTTGCTAGACCATAAAAATCTTACTAGACCTTGTAAATGACAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTAGACCATAAAAATCTTACTAGACCTTGTAAATGACAAGC  50

seq1  AGGTCATGCTGTTTTTCTTATTAAGTAGTCCTCTCTCTAATGCAGAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGCTGTTTTTCTTATTAAGTAGTCCTCTCTCTAATGCAGAGTCC  100

seq1  CCTGACCCTCCAGAAAACACTTGCAGCCTGCTTCTGTTTTAGCCAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCTCCAGAAAACACTTGCAGCCTGCTTCTGTTTTAGCCAAAGTA  150

seq1  TTACATTGTGGCAGGTCACACATGCTAAGGTTCAGTGATTTCTTACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGTGGCAGGTCACACATGCTAAGGTTCAGTGATTTCTTACATAT  200

seq1  GTATGTAACCATGAAGTCAAAATCCAGATACAATTTAGAATCTGCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAACCATGAAGTCAAAATCCAGATACAATTTAGAATCTGCCTCTG  250

seq1  CCTCTATAAGATTCCCTCCTCTGGCCTTTTGCAGCCTGCCCTTAACCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATAAGATTCCCTCCTCTGGCCTTTTGCAGCCTGCCCTTAACCTAG  300

seq1  GGGTAAGCTCTTTACTGGTGGCTGTGGCATGGGTCAGGGACACATGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGCTCTTTACTGGTGGCTGTGGCATGGGTCAGGGACACATGGGGT  350

seq1  TTGTGTGCAGTGCTTCCATATCAATAAGCTTTACAATGTACTCATTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCAGTGCTTCCATATCAATAAGCTTTACAATGTACTCATTGGAG  400

seq1  TGTGCTAGAGTACAAGGAAGTCCTTTTCACTTCTTTCCAGAGGTCACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAGAGTACAAGGAAGTCCTTTTCACTTCTTTCCAGAGGTCACTTG  450

seq1  TATAAGAGGAACTGTTTCTAGTCAAGTGACTAATCTTAGCTTTTGCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGGAACTGTTTCTAGTCAAGTGACTAATCTTAGCTTTTGCAATC  500

seq1  ACAAACAGCACACTTTAACTACACAAAAAGAGAATTATTCTGCAGATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGCACACTTTAACTACACAAAAAGAGAATTATTCTGCAGATGAA  550

seq1  TGACTTCATGCATTCCCATTCTCTAAAGGAGGACACCATTTTTTCACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATGCATTCCCATTCTCTAAAGGAGGACACCATTTTTTCACAGA  600

seq1  CACCAGTTCCTTCTGATTACCCCACCTCAGTATTCTTCTGTGTTTTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTTCCTTCTGATTACCCCACCTCAGTATTCTTCTGTGTTTTACCT  650

seq1  GAATCAGATTTCTTTGTTCTGTGTATGAATGACACATCCCATGTCTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGATTTCTTTGTTCTGTGTATGAATGACACATCCCATGTCTTCTC  700

seq1  GCCAACTCCAAAAGTTCATGTAATTGTGAAAGTAGCCAATACAGAAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCCAAAAGTTCATGTAATTGTGAAAGTAGCCAATACAGAAGGAT  750

seq1  GGAGAATTTGATAAATAACCATACGCCATCATTCTTTATAGAATATTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTGATAAATAACCATACGCCATCATTCTTTATAGAATATTTCA  800

seq1  GAGAAGGCAAAGTAAGCCAATACAGAAAGGTCCTGTTTTACTTCTATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAAAGTAAGCCAATACAGAAAGGTCCTGTTTTACTTCTATCTA  850

seq1  GAGAGCACCTCCTTTAGAGTATTTTCTGGGGCCCTGTGTTAAATCTAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCACCTCCTTTAGAGTATTTTCTGGGGCCCTGTGTTAAATCTAGAC  900

seq1  TTGCTTCCAATTAAGAATCTAAAGCAGAAGTCTTAGACTCTTGTTTTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCAATTAAGAATCTAAAGCAGAAGTCTTAGACTCTTGTTTTCAA  950

seq1  CCAAATTCAATGAATAAAAGTGGACTTGGTGGCTGTGTGTAATGATGACC  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCAAATTCAATGAAT-AAAGTGGACTTGGTGGCTGTGTGTAATGATGACC  999

seq1  AGAGCT-GGGGTGGTC-TTCTTTCCAGGGAGAT-AGTTCTTCAGACTAAA  1047
      |||||| ||||||||| |||||||||||||||| ||||| ||||||||||
seq2  AGAGCTGGGGGTGGTCTTTCTTTCCAGGGAGATAAGTTC-TCAGACTAAA  1048

seq1  AGGCTTCTAAGGACACACTAGGAGATAAAGTAGAGAGTTAGAGACCACAA  1097
      |||||||| | ||||||||| ||||  |||||||||| |||||| |||||
seq2  AGGCTTCT-ACGACACACTA-GAGAATAAGTAGAGAG-TAGAGA-CACAA  1094

seq1  AAGATCTTAAGTTATTCATTTCAAGAATTCTTCCATAATTATTGAGAATT  1147
      |||||||  || || ||| |||| |||||||||||||  || ||| || |
seq2  AAGATCT--AG-TAATCA-TTCAGGAATTCTTCCATA--TA-TGAAAAGT  1137

seq1  TCCCTTCTTAAATTTTTAAATTACTGCTGGAAC  1180
      ||| | || ||   ||| |||||||||||||||
seq2  TCCGTCCTGAA---TTTTAATTACTGCTGGAAC  1167


seq1: chr14_18708628_18709759
seq2: B6Ng01-304O24.g_69_1197 (reverse)

seq1  TCAGATTGGCCTGTGGGCATGTCTGTGGGCATTTTCCTGCTTGCTAATTG  50
      ||||| || |||||||   |  ||||||||| |||| ||| |||||  ||
seq2  TCAGA-TGACCTGTGGCAGTTCCTGTGGGCA-TTTCTTGCCTGCTA--TG  46

seq1  ATGCAGAAGGGCCCAGCCCACAGTGGGTTGTACCTCTCCAGGCAAGAGGA  100
      |||||||| || ||||||||||||||||||||||||||||||| ||| ||
seq2  ATGCAGAAAGG-CCAGCCCACAGTGGGTTGTACCTCTCCAGGC-AGA-GA  93

seq1  ACTGAACTG-TAAGA--GACAGGTAAAACCATGAGCCTGTGAGAAAACAA  147
      |||| |||| |||||  ||||||| |||||||||| |||||||||||  |
seq2  ACTG-ACTGTTAAGAAGGACAGGT-AAACCATGAG-CTGTGAGAAAAACA  140

seq1  GAAACTCGGGTCTTCCATGA-GCTTGCTTCAGTTCC-TGACTCCA-GGTT  194
      ||||||||||||| |||||| ||||||||||||||| |||||||| ||||
seq2  GAAACTCGGGTCTCCCATGAGGCTTGCTTCAGTTCCTTGACTCCAGGGTT  190

seq1  CCTGCTTGGATG-CCTCTGTTGGCTTGCCTTTGACACGGGCTGTGAGCTG  243
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGGATGCCCTCTGTTGGCTTGCCTTTGACACGGGCTGTGAGCTG  240

seq1  TGAGATATATTAAATGCTTTCCTCTGAGGATTGCTTTGGTCATGATATCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATATTAAATGCTTTCCTCTGAGGATTGCTTTGGTCATGATATCT  290

seq1  ATTGTGGCATCAGAAAAACAAACTAGAACACTTTCCAACACTATGAGAGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCATCAGAAAAACAAACTAGAACACTTTCCAACACTATGAGAGC  340

seq1  CCGAGTTGTTCTCTCATCTGCTTCTCTACAGGAAACATCATGTCTGTTTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTTGTTCTCTCATCTGCTTCTCTACAGGAAACATCATGTCTGTTTC  390

seq1  TTTGTTTTCTAAGAGTAGAGGTGAGTCACGCACTAAAATAGCTTTTAGAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCTAAGAGTAGAGGTGAGTCACGCACTAAAATAGCTTTTAGAT  440

seq1  ACTGTGTGCAATTCACCTAATAAAATAAGAATCCCTAGAGGAAGAGAGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGCAATTCACCTAATAAAATAAGAATCCCTAGAGGAAGAGAGAC  490

seq1  AGAGACAGAGAGACTGAGAGGGAGAGAGAAAGAAAGTACATGTGCTTGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGACTGAGAGGGAGAGAGAAAGAAAGTACATGTGCTTGTG  540

seq1  AGGTGTGATGAATCTTTTCTCTGGAATTCTATAGTGCCTCCTTTTAATCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGATGAATCTTTTCTCTGGAATTCTATAGTGCCTCCTTTTAATCT  590

seq1  TTTACTCCTACAGTATTGTGGATTCCTTTAACTCAATTAAATTCCCAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCTACAGTATTGTGGATTCCTTTAACTCAATTAAATTCCCAAAC  640

seq1  ATTTGTAAAATAAGAATCAAACTAGAGAAGTGTATTTGGAAAGAAACAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAAATAAGAATCAAACTAGAGAAGTGTATTTGGAAAGAAACAAG  690

seq1  CTTGATGAAAAACATCTCTGTGGAGCAATTCTTAGAGCAAATTCTTACTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGAAAAACATCTCTGTGGAGCAATTCTTAGAGCAAATTCTTACTG  740

seq1  GCATATGGATGTATTATTAATGATGCCACCCTTAATCCAAAATTCTGATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGATGTATTATTAATGATGCCACCCTTAATCCAAAATTCTGATT  790

seq1  ACTTAAGTGCTGATTTCTTAACATAACTTTTTAGAGACAGTGTTATTCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTGCTGATTTCTTAACATAACTTTTTAGAGACAGTGTTATTCAT  840

seq1  TCTTTATAGCTTCAACTTAACTTCAACATTGCTTTTCCCCATGGAAACCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAGCTTCAACTTAACTTCAACATTGCTTTTCCCCATGGAAACCC  890

seq1  TGAGGAACACAGGCAGAAGGCAACAACTGAAGACTTACAGCTTTCTAGTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACACAGGCAGAAGGCAACAACTGAAGACTTACAGCTTTCTAGTC  940

seq1  TCATTCCATGCATTCCCACAACTAACTAAATGCCATAACTGTAATGTGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCATGCATTCCCACAACTAACTAAATGCCATAACTGTAATGTGGA  990

seq1  GACCTTCCAGCCAGAACTTCTCTAAGTGACAAAATGTACAGAGGTCTTGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCAGCCAGAACTTCTCTAAGTGACAAAATGTACAGAGGTCTTGG  1040

seq1  GTTTCAGATCTGACAGGGAAGAGCACAGTAGCCCAGCCCTGCTGGGCTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGATCTGACAGGGAAGAGCACAGTAGCCCAGCCCTGCTGGGCTGA  1090

seq1  GACCCCTGACCCTTCAACAACCCAGACCTGCAGGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTGACCCTTCAACAACCCAGACCTGCAGGAATTC  1129


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