BAC Information

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BAC

Clone NameB6Ng01-305C23
Chromosome14 (Build37)
Map Location 55,648,931 - 55,805,916
singlet/doubletdoublet
Overlap geneZfhx2, Thtpa, Ap1g2, Jph4, LOC667938
Upstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn
Downstream geneDhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C23.bB6Ng01-305C23.g
ACCGA098539GA098540
length1,1291,125
definitionB6Ng01-305C23.b B6Ng01-305C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,804,823 - 55,805,916)(55,648,931 - 55,650,053)
sequence
gaattcatgtagctctgtctggtgttaaagggcttagatggcttcatctt
tgctgactgtgacatacgtttctttcgtggctgccccactcccactgcgc
agctctccctggcaggtatctctggtatctcccatatcttggggtttcca
gaatgatcaaggcttcactttcatagtttcatgcatcttagagcctctta
tgcaggaactcccttgcctcacaccagacctcattggctctccttaaccg
tggagaaaggttctacaaccctttcactttttacttttacagtccttagt
gactcgaaagcccgaacctcgtggacaacactgcccagtttagcccactt
ggggagagaacctggcccactccttgaattacatttctagaagcttttct
ttattgatttttggaacagaaaattcctcaggcatttcccttttacaggt
tggaagcttatctgggtggggtcttacactgcgggcacctctctctccgt
ggtttcacttcaggcatctttttttaaattttatttatttaatctcttag
aacagctaaatgtttatttaaaaagcaaatcaagcatatttgccatctta
aaaaaaacattgcaaaatttggaggattatttataatctgaagacacata
aattcttagacaaatggatgaatctcgaggatatcatcctgagtgaggta
acccaatcacaaaagagaacacatgatatgcactcaatgataagtggata
ttagcccagaagctcagaatacccaagatacaatttgcaaaacacatgaa
actcaagcagaaggaagaccaagtgtgaatactttaatccttcttagaag
ggggaacaaaatacccatggaaggagctacagagacaaagttcagagcag
agactgaaggaatgaccatccagagactgcccaccaggggatccatccca
taaacaaccaccaaacccaaattgcagatgcacagagcctgctgacagag
cctgatatagctgtctcctgtgaggctctgccagtgcctgcaaatacaga
agtggatgctcacaatcatccttggacaggagcacagttccccatgagga
ctagaagaaagtacccatggagctgaagg
gaattctaggataaccaaggctacacatagaaaccttgcctcaaaaaacc
aatagatagatagatagatagatagatagatagatagatagatagataga
tagatagatagatagataggaaggaagtaatgtttttaaaagaattcagt
aaaggccccattcattcagaaagtttgcatttggattgtttaggatgggt
gtgatcttattatttttttttatccattctataaggctggagaaatacta
ggctctaaaaccttcgtggcctcaggaacatcctgtttctgagctttaga
gtcctcagaaggcacttgctagggaagcaatggcaacctgagtggtctct
gcccaggacaattctggctgaaagaccttggctcagtcctgcgccccatt
ttctatcccaagtctctcctttgtctcggtggaatttctgtgcctcccgc
ttcagcccatggctctctttgttctgcctttccagggttcaccctaaact
catcagaccattaatttggctctatcttgtcttcttttctggagaaccat
ctcgtctctgtgtggccagtaccctagactcctcagctcatgctgagcta
gtgctggttataaagctatccagtttccaagatggccaattttcttctta
tcagatcgtcattgtgaactgccagcatcccaggcactcccctggacagc
aatgtctttgtgtaagccctagagattgtcgacaatacagatggaccatg
tggcctttttctgtgacagcgacagagctttcttagttgggtggcagctc
tggagtgactgactttcattctcagatgtgtgagccaaagctaaccgcca
aactaaggaaaggcagtttagctaaagccctggaggaagaatcaggagag
gcctctgtaggagaagtgggggctggagcaccatgggctttgctgtctta
tttgagcctggaaggttctggactcttctcttcctgccaagcctgccttc
tctagtatacagtagaggcctttctcagctgcctgaagttctgttctatg
ttggccattccgaggtaagccacaggtggatcccttgtacagaaatccca
ttgtaagatctgtcttcctgctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55804823_55805916
seq2: B6Ng01-305C23.b_89_1175 (reverse)

seq1  CCTTCAGCTCCATGGGTACTTTC-TCTAGCTCCTTCATTGGGGACCTTGT  49
      ||||||||||||||||||||||| ||||| ||| |||| ||| ||  |||
seq2  CCTTCAGCTCCATGGGTACTTTCTTCTAG-TCC-TCATGGGGAAC--TGT  46

seq1  GCT-CTGTCCAAGGATGATTGTGAGCATCCACTTCTGTATTTGCCAGGCA  98
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTCCTGTCCAAGGATGATTGTGAGCATCCACTTCTGTATTTG-CAGGCA  95

seq1  CTGGCAGAGCCTCACAGGAGACAGCTATATCAGGCTCCTGTCAGCAGGCT  148
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGGCAGAGCCTCACAGGAGACAGCTATATCAGGCT-CTGTCAGCAGGCT  144

seq1  CTTGTTGGCATCTGCAATTTGGGTTTGGTGGTTGTTTATGGGATGGATCC  198
      | |||  |||||||||||||||||||||||||||||||||||||||||||
seq2  C-TGT--GCATCTGCAATTTGGGTTTGGTGGTTGTTTATGGGATGGATCC  191

seq1  CCTGGTGGGCAGTCTCTGGATGGTCATTCCTTCAGTCTCTGCTCTGAACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGGCAGTCTCTGGATGGTCATTCCTTCAGTCTCTGCTCTGAACT  241

seq1  TTGTCTCTGTAGCTCCTTCCATGGGTATTTTGTTCCCCCTTCTAAGAAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGTAGCTCCTTCCATGGGTATTTTGTTCCCCCTTCTAAGAAGG  291

seq1  ATTAAAGTATTCACACTTGGTCTTCCTTCTGCTTGAGTTTCATGTGTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTATTCACACTTGGTCTTCCTTCTGCTTGAGTTTCATGTGTTTT  341

seq1  GCAAATTGTATCTTGGGTATTCTGAGCTTCTGGGCTAATATCCACTTATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTGTATCTTGGGTATTCTGAGCTTCTGGGCTAATATCCACTTATC  391

seq1  ATTGAGTGCATATCATGTGTTCTCTTTTGTGATTGGGTTACCTCACTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGCATATCATGTGTTCTCTTTTGTGATTGGGTTACCTCACTCAG  441

seq1  GATGATATCCTCGAGATTCATCCATTTGTCTAAGAATTTATGTGTCTTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATCCTCGAGATTCATCCATTTGTCTAAGAATTTATGTGTCTTCA  491

seq1  GATTATAAATAATCCTCCAAATTTTGCAATGTTTTTTTTAAGATGGCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAAATAATCCTCCAAATTTTGCAATGTTTTTTTTAAGATGGCAAA  541

seq1  TATGCTTGATTTGCTTTTTAAATAAACATTTAGCTGTTCTAAGAGATTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGATTTGCTTTTTAAATAAACATTTAGCTGTTCTAAGAGATTAA  591

seq1  ATAAATAAAATTTAAAAAAAGATGCCTGAAGTGAAACCACGGAGAGAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAATTTAAAAAAAGATGCCTGAAGTGAAACCACGGAGAGAGAG  641

seq1  GTGCCCGCAGTGTAAGACCCCACCCAGATAAGCTTCCAACCTGTAAAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGCAGTGTAAGACCCCACCCAGATAAGCTTCCAACCTGTAAAAGG  691

seq1  GAAATGCCTGAGGAATTTTCTGTTCCAAAAATCAATAAAGAAAAGCTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCTGAGGAATTTTCTGTTCCAAAAATCAATAAAGAAAAGCTTCT  741

seq1  AGAAATGTAATTCAAGGAGTGGGCCAGGTTCTCTCCCCAAGTGGGCTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTAATTCAAGGAGTGGGCCAGGTTCTCTCCCCAAGTGGGCTAAA  791

seq1  CTGGGCAGTGTTGTCCACGAGGTTCGGGCTTTCGAGTCACTAAGGACTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGTGTTGTCCACGAGGTTCGGGCTTTCGAGTCACTAAGGACTGT  841

seq1  AAAAGTAAAAAGTGAAAGGGTTGTAGAACCTTTCTCCACGGTTAAGGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAAAGTGAAAGGGTTGTAGAACCTTTCTCCACGGTTAAGGAGA  891

seq1  GCCAATGAGGTCTGGTGTGAGGCAAGGGAGTTCCTGCATAAGAGGCTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGAGGTCTGGTGTGAGGCAAGGGAGTTCCTGCATAAGAGGCTCTA  941

seq1  AGATGCATGAAACTATGAAAGTGAAGCCTTGATCATTCTGGAAACCCCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATGAAACTATGAAAGTGAAGCCTTGATCATTCTGGAAACCCCAA  991

seq1  GATATGGGAGATACCAGAGATACCTGCCAGGGAGAGCTGCGCAGTGGGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGAGATACCAGAGATACCTGCCAGGGAGAGCTGCGCAGTGGGAG  1041

seq1  TGGGGCAGCCACGAAAGAAACGTATGTCACAGTCAGCAAAGATGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGCCACGAAAGAAACGTATGTCACAGTCAGCAAAGATGAA  1087

seq1: chr14_55648931_55650053
seq2: B6Ng01-305C23.g_67_1191

seq1  GAATTCTAGGATAACCAAGGCTACACATAGAAACCTTGCCTCAAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGATAACCAAGGCTACACATAGAAACCTTGCCTCAAAAAACC  50

seq1  AATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  100

seq1  TAGATAGATAGATAGATAGGAAGGAAGTAATGTTTTTAAAAGAATTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGGAAGGAAGTAATGTTTTTAAAAGAATTCAGT  150

seq1  AAAGGCCCCATTCATTCAGAAAGTTTGCATTTGGATTGTTTAGGATGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCCATTCATTCAGAAAGTTTGCATTTGGATTGTTTAGGATGGGT  200

seq1  GTGATCTTATTATTTTTTTTTATCCATTCTATAAGGCTGGAGAAATACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTATTATTTTTTTTTATCCATTCTATAAGGCTGGAGAAATACTA  250

seq1  GGCTCTAAAACCTTCGTGGCCTCAGGAACATCCTGTTTCTGAGCTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAAAACCTTCGTGGCCTCAGGAACATCCTGTTTCTGAGCTTTAGA  300

seq1  GTCCTCAGAAGGCACTTGCTAGGGAAGCAATGGCAACCTGAGTGGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGAAGGCACTTGCTAGGGAAGCAATGGCAACCTGAGTGGTCTCT  350

seq1  GCCCAGGACAATTCTGGCTGAAAGACCTTGGCTCAGTCCTGCGCCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGACAATTCTGGCTGAAAGACCTTGGCTCAGTCCTGCGCCCCATT  400

seq1  TTCTATCCCAAGTCTCTCCTTTGTCTCGGTGGAATTTCTGTGCCTCCCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCCAAGTCTCTCCTTTGTCTCGGTGGAATTTCTGTGCCTCCCGC  450

seq1  TTCAGCCCATGGCTCTCTTTGTTCTGCCTTTCCAGGGTTCACCCTAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCATGGCTCTCTTTGTTCTGCCTTTCCAGGGTTCACCCTAAACT  500

seq1  CATCAGACCATTAATTTGGCTCTATCTTGTCTTCTTTTCTGGAGAACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACCATTAATTTGGCTCTATCTTGTCTTCTTTTCTGGAGAACCAT  550

seq1  CTCGTCTCTGTGTGGCCAGTACCCTAGACTCCTCAGCTCATGCTGAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTCTGTGTGGCCAGTACCCTAGACTCCTCAGCTCATGCTGAGCTA  600

seq1  GTGCTGGTTATAAAGCTATCCAGTTTCCAAGATGGCCAATTTTCTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGTTATAAAGCTATCCAGTTTCCAAGATGGCCAATTTTCTTCTTA  650

seq1  TCAGATCGTCATTGTGAACTGCCAGCATCCCAGGCACTCCCCTGGACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCGTCATTGTGAACTGCCAGCATCCCAGGCACTCCCCTGGACAGC  700

seq1  AATGTCTTTGTGTAAGCCCTAGAGATTGTCGACAATACAGATGGACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTTGTGTAAGCCCTAGAGATTGTCGACAATACAGATGGACCATG  750

seq1  TGGCCTTTTTCTGTGACAGCGACAGAGCTTTCTTAGTTGGGTGGCAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTTTCTGTGACAGCGACAGAGCTTTCTTAGTTGGGTGGCAGCTC  800

seq1  TGGAGTGACTGACTTTCATTCTCAGATGTGTGAGCCAAAGCTAACCGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGACTGACTTTCATTCTCAGATGTGTGAGCCAAAGCTAACCGCCA  850

seq1  AACTAAGG-AAGGCAG-TTAGCTAAAGCCCTGGAGGAAGAATCAGGAGAG  898
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  AACTAAGGAAAGGCAGTTTAGCTAAAGCCCTGGAGGAAGAATCAGGAGAG  900

seq1  GCCTCTGTAGGAGAAGTGGGGGCTGGAGCACCATGGGCTTTGCTGTCTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTAGGAGAAGTGGGGGCTGGAGCACCATGGGCTTTGCTGTCTTA  950

seq1  TTTGAGCCTTGGAGGTTCTGGACTCTTCTTCCTTCCTGCCAAGCCTGCCT  998
      ||||||||| | |||||||||||||||||  |||||||||||||||||||
seq2  TTTGAGCCTGGAAGGTTCTGGACTCTTCT--CTTCCTGCCAAGCCTGCCT  998

seq1  TCCTCTAGTATACAGGTAGAGGCCTTCCTCAGCTGCCTGGAGTTCTGTTC  1048
      | |||||||||||| ||||||||||| |||||||||||| ||||||||||
seq2  T-CTCTAGTATACA-GTAGAGGCCTTTCTCAGCTGCCTGAAGTTCTGTTC  1046

seq1  TATGTTGGGCATT-CGAGTTA--GCACA-GTGG-TCTCATGTAACAGAGA  1093
      |||||||| |||| |||| ||   |||| |||| || | ||| ||||| |
seq2  TATGTTGGCCATTCCGAGGTAAGCCACAGGTGGATCCCTTGT-ACAGAAA  1095

seq1  TCCC-TTGTAAGATCTGTCTTCTCTGCTTTT  1123
      |||| ||||||||||||||||| ||||||||
seq2  TCCCATTGTAAGATCTGTCTTC-CTGCTTTT  1125