BAC Information

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BAC

Clone NameB6Ng01-305L04
Chromosome14 (Build37)
Map Location 85,165,179 - 85,271,939
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305L04.bB6Ng01-305L04.g
ACCGA098924GA098925
length1,0271,110
definitionB6Ng01-305L04.b B6Ng01-305L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,165,179 - 85,166,213)(85,270,826 - 85,271,939)
sequence
gaattctagagttggaaactgaaaacatgaccagtgtgcaaaaactgaaa
aagcaaaagacatgtttccttctccttataacatataagcacatgtctgg
ttctctaaaactactagttagtgttgttaccctttttgtgttttagaata
gccttgctcttttttctttttctttctttctatattttttttgcaatttt
gatgttattaaaatgaatttactatatttatgaatacaatcacaatcttt
taatctttttttttctggttgattttggtgtgtgatgtttttatttatat
gcaaagttttttatatgcaaccatttaataataaaatttactaaaaaacc
cacaccaaaaaaaaaaaaaaacccaaaacaagggaaggacactataactt
attgctaggaaggtagtatgtagagagtgctgagtttcatcttcagcatg
tcttaagacacaattatggaggtatttctagacttttacaaagaggctga
gagctcaagactattaacaaaataagatgtgttgatatgaccatatcctt
tccttacatcttaagttaaaatgtccaatatgaggaaaaacatcattctc
agcagaaaagtttactcaaagtacaagaaagatgataaagaatggagatg
aaatacaaatcaaaatcaccataggaacacattagcataaagcaaggcag
ttaggtaacagtgcatattggcaagggtatggaaaatattagagtccata
catattccttttttttttataagtatagtatgaggttttttttccatttt
ttattaggtatttagctcatttacatttccaatgctataccaaaagtccc
ccatacccacccacccccactcccctaccacccactccccctttttggcc
ctggcgttccccttgtactggggcatataaagttgtgttgtccatgggct
ctctttccagtgatgaccgactagcatctttgatacattagcagctagag
tcaagagctcgggtatgttagttcata

gaattcaaatgtctgggaatctcaaaactgtacgaatgggaaggtactac
taagtttttcaggaatgtgttttaagaaatgtgtaacaattaaaatacat
ttcctcagaattattatcactaagtgcttgacactatataatttcatttt
atatgactcatattaatagctaaaatatgcacataaagcaaatgttggct
taaaagtgacagaaggaagacatttcatattatattaggaaaagtgttcc
tgatattggcctattccattagtgcatatgctcaataatttatcataata
cactttaagattcaataagatgaccatttatctgaaacgaaaagaaatat
gaattgaatatatgaatagaaatatgaacggaatatgtactcaaatttct
gataaaatgtaaaatttagcaaataaatttcaaaacatcttaaagtctca
atattctattttgaacctcattaacgatgttataacttcaagaaataact
tttatggtatccatttaatcatttgaaatgtgaaataacaagtgtaacaa
atctctaaatatattattgatcgctacctgtaggaccagttgctgaattg
ttaagagtttatagcgcattgtacaatatcaaatcatcctagtttaccaa
tttattgttggtccagcagattttccactccttttgtttgacaggaaggg
agtgatgcgttgactgatgtggagttcgagtttctcaagcctgaacaagt
tctgcactcaaagtagaactgcgcgtgctccttctccccactccactgac
ttcagtagtgctctacttccctttgacaacttgcaaggaagcttaacttc
tacatagacttcatttcttattctttctactagatttctccttttcaata
tgctttgatatatgggtctatagagtaaagtttagaattcaaaagcacca
tttctacttagggctcatagcgtctttcatgtgctatgatatgagacttt
gattttattcagtatgcagctcatgctagcttagccactacattttctca
tatttattttgaagcttactatgatataagaagtagtgctgtagtaccta
aaattgatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85165179_85166213
seq2: B6Ng01-305L04.b_44_1070

seq1  GAATTCTAGAGTTGGAAACTGAAAACATGACCAGTGTGCAAAAACTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGTTGGAAACTGAAAACATGACCAGTGTGCAAAAACTGAAA  50

seq1  AAGCAAAAGACATGTTTCCTTCTCCTTATAACATATAAGCACATGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAGACATGTTTCCTTCTCCTTATAACATATAAGCACATGTCTGG  100

seq1  TTCTCTAAAACTACTAGTTAGTGTTGTTACCCTTTTTGTGTTTTAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAAACTACTAGTTAGTGTTGTTACCCTTTTTGTGTTTTAGAATA  150

seq1  GCCTTGCTCTTTTTTCTTTTTCTTTCTTTCTATATTTTTTTTGCAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCTCTTTTTTCTTTTTCTTTCTTTCTATATTTTTTTTGCAATTTT  200

seq1  GATGTTATTAAAATGAATTTACTATATTTATGAATACAATCACAATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATTAAAATGAATTTACTATATTTATGAATACAATCACAATCTTT  250

seq1  TAATCTTTTTTTTTCTGGTTGATTTTGGTGTGTGATGTTTTTATTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTTTTTTTCTGGTTGATTTTGGTGTGTGATGTTTTTATTTATAT  300

seq1  GCAAAGTTTTTTATATGCAACCATTTAATAATAAAATTTACTAAAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTTTTTTATATGCAACCATTTAATAATAAAATTTACTAAAAAACC  350

seq1  CACACCAAAAAAAAAAAAAAACCCAAAACAAGGGAAGGACACTATAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAAAAAAAAAAAAAACCCAAAACAAGGGAAGGACACTATAACTT  400

seq1  ATTGCTAGGAAGGTAGTATGTAGAGAGTGCTGAGTTTCATCTTCAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAGGAAGGTAGTATGTAGAGAGTGCTGAGTTTCATCTTCAGCATG  450

seq1  TCTTAAGACACAATTATGGAGGTATTTCTAGACTTTTACAAAGAGGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGACACAATTATGGAGGTATTTCTAGACTTTTACAAAGAGGCTGA  500

seq1  GAGCTCAAGACTATTAACAAAATAAGATGTGTTGATATGACCATATCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAGACTATTAACAAAATAAGATGTGTTGATATGACCATATCCTT  550

seq1  TCCTTACATCTTAAGTTAAAATGTCCAATATGAGGAAAAACATCATTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACATCTTAAGTTAAAATGTCCAATATGAGGAAAAACATCATTCTC  600

seq1  AGCAGAAAAGTTTACTCAAAGTACAAGAAAGATGATAAAGAATGGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAAGTTTACTCAAAGTACAAGAAAGATGATAAAGAATGGAGATG  650

seq1  AAATACAAATCAAAATCACCATAGGAACACATTAGCATAAAGCAAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAATCAAAATCACCATAGGAACACATTAGCATAAAGCAAGGCAG  700

seq1  TTAGGTAACAGTGCATATTGGCAAGGGTATGGAAAATATTAGAGTCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAACAGTGCATATTGGCAAGGGTATGGAAAATATTAGAGTCCATA  750

seq1  CATATTCC-TTTTTTTTTATAAGTATAGTATGAGGTTTTTTTTCCATTTT  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCCTTTTTTTTTTATAAGTATAGTATGAGGTTTTTTTTCCATTTT  800

seq1  TTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCC  850

seq1  CCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGC  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATACCCACCCACCCCCACTCCCCTA-CCACCCACTCCCCCTTTTTGGC  899

seq1  CCTGGCGTTCCCC-TGTACTGGGGCATATAAAGTTTGTG-TGTCCAATGG  947
      ||||||||||||| ||||||||||||||||||| ||||| ||||| ||||
seq2  CCTGGCGTTCCCCTTGTACTGGGGCATATAAAG-TTGTGTTGTCC-ATGG  947

seq1  GCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCA  997
      | ||||||||||||||||| ||||||||  |||| ||||||||||  |||
seq2  G-CTCTCTTTCCAGTGATGACCGACTAG--CATC-TTTGATACATTAGCA  993

seq1  GCTAGAGTCAAGAGCTCTGGGGTATTGGTTAGTTCATA  1035
      |||||||||||||||||  ||||||  |||||||||||
seq2  GCTAGAGTCAAGAGCTC--GGGTAT--GTTAGTTCATA  1027


seq1: chr14_85270826_85271939
seq2: B6Ng01-305L04.g_68_1177 (reverse)

seq1  AGATCATTTTAGGGTACTACAGCACTACTTCTTTATATCAATAGTAGGTT  50
      |||||| |||  ||||||||||||||||||| ||||||| |||||| | |
seq2  AGATCAATTTTAGGTACTACAGCACTACTTC-TTATATC-ATAGTAAGCT  48

seq1  TCAAAAATAAATTATGAG-AAATGTAGTGGCTAAGCTAGCATGAGCTGCA  99
      || |||||||| |||||| |||||||||||||||||||||||||||||||
seq2  TC-AAAATAAA-TATGAGAAAATGTAGTGGCTAAGCTAGCATGAGCTGCA  96

seq1  TACTGAATAAAATCAAAGTCTCATTATCATAGCACATGAAAGACGCTATG  149
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACTGAATAAAATCAAAGTCTCA-TATCATAGCACATGAAAGACGCTATG  145

seq1  AGCCCCTAAGTAGAAATGGTGCTTTTGAATTCTAAACTTTACTCTATAGA  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-CCCTAAGTAGAAATGGTGCTTTTGAATTCTAAACTTTACTCTATAGA  194

seq1  -CCATATATCAAAGCATATTGAAAAGGAGAAATCTAGTAGAAAGAATAAG  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATATCAAAGCATATTGAAAAGGAGAAATCTAGTAGAAAGAATAAG  244

seq1  AAATGAAGTCTATGTAGAAGTTAAGCTTCCTTGCAAGTTGTCAAAGGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGTCTATGTAGAAGTTAAGCTTCCTTGCAAGTTGTCAAAGGGAA  294

seq1  GTAGAGCACTACTGAAGTCAGTGGAGTGGGGAGAAGGAGCACGCGCAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCACTACTGAAGTCAGTGGAGTGGGGAGAAGGAGCACGCGCAGTT  344

seq1  CTACTTTGAGTGCAGAACTTGTTCAGGCTTGAGAAACTCGAACTCCACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGAGTGCAGAACTTGTTCAGGCTTGAGAAACTCGAACTCCACAT  394

seq1  CAGTCAACGCATCACTCCCTTCCTGTCAAACAAAAGGAGTGGAAAATCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACGCATCACTCCCTTCCTGTCAAACAAAAGGAGTGGAAAATCTG  444

seq1  CTGGACCAACAATAAATTGGTAAACTAGGATGATTTGATATTGTACAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAACAATAAATTGGTAAACTAGGATGATTTGATATTGTACAATG  494

seq1  CGCTATAAACTCTTAACAATTCAGCAACTGGTCCTACAGGTAGCGATCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATAAACTCTTAACAATTCAGCAACTGGTCCTACAGGTAGCGATCAA  544

seq1  TAATATATTTAGAGATTTGTTACACTTGTTATTTCACATTTCAAATGATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTTAGAGATTTGTTACACTTGTTATTTCACATTTCAAATGATT  594

seq1  AAATGGATACCATAAAAGTTATTTCTTGAAGTTATAACATCGTTAATGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATACCATAAAAGTTATTTCTTGAAGTTATAACATCGTTAATGAG  644

seq1  GTTCAAAATAGAATATTGAGACTTTAAGATGTTTTGAAATTTATTTGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAATAGAATATTGAGACTTTAAGATGTTTTGAAATTTATTTGCTA  694

seq1  AATTTTACATTTTATCAGAAATTTGAGTACATATTCCGTTCATATTTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACATTTTATCAGAAATTTGAGTACATATTCCGTTCATATTTCTA  744

seq1  TTCATATATTCAATTCATATTTCTTTTCGTTTCAGATAAATGGTCATCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATTCAATTCATATTTCTTTTCGTTTCAGATAAATGGTCATCTT  794

seq1  ATTGAATCTTAAAGTGTATTATGATAAATTATTGAGCATATGCACTAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATCTTAAAGTGTATTATGATAAATTATTGAGCATATGCACTAATG  844

seq1  GAATAGGCCAATATCAGGAACACTTTTCCTAATATAATATGAAATGTCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCCAATATCAGGAACACTTTTCCTAATATAATATGAAATGTCTT  894

seq1  CCTTCTGTCACTTTTAAGCCAACATTTGCTTTATGTGCATATTTTAGCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCACTTTTAAGCCAACATTTGCTTTATGTGCATATTTTAGCTA  944

seq1  TTAATATGAGTCATATAAAATGAAATTATATAGTGTCAAGCACTTAGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGAGTCATATAAAATGAAATTATATAGTGTCAAGCACTTAGTGA  994

seq1  TAATAATTCTGAGGAAATGTATTTTAATTGTTACACATTTCTTAAAACAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTCTGAGGAAATGTATTTTAATTGTTACACATTTCTTAAAACAC  1044

seq1  ATTCCTGAAAAACTTAGTAGTACCTTCCCATTCGTACAGTTTTGAGATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAAAAACTTAGTAGTACCTTCCCATTCGTACAGTTTTGAGATTC  1094

seq1  CCAGACATTTGAATTC  1114
      ||||||||||||||||
seq2  CCAGACATTTGAATTC  1110


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