BAC Information

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BAC

Clone NameB6Ng01-306A24
Chromosome14 (Build37)
Map Location 112,050,646 - 112,176,162
singlet/doubletdoublet
Overlap geneSlitrk5
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306A24.bB6Ng01-306A24.g
ACCGA099196GA099197
length1,104905
definitionB6Ng01-306A24.b B6Ng01-306A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,175,056 - 112,176,162)(112,050,646 - 112,051,201)
sequence
gaattctatgctttaatgtcttcttgcttcgttgtgtatttgaagctata
aactaaatggccttttctatctttgaattatctatgagttgtaaacataa
aaaaatctgtgaaaatttttcaaaaggccttgcaacatttggaaaaagta
acttggcccaagaattagccatatgttgctgtactaaagatttgctaaaa
tcagtttcttgactgaattttttcttaaaacttcctataagatttaaaaa
gtcattctggttgtattttaaattatagaagctgctcaaggttttacatt
gtttatttctatacacaaaagacatgttttaaataatttaaagatttgaa
atatagtatttattttccttacatcaataaatcatgcacaagcacaaaca
gaaagatataatatggcaaagtagatggattcataatcatttcagaatga
taattgtaaaacttcccaggatacagaaagagcatgtttcttgcatgttt
cttcgatccttacattacattggtatatttcaatgatgatgaactgacca
tatctgggtcactcttgttgaaaaatgcatgagggaggaaatgaagcata
gagaatccatgttagaaggaagtgctgtcctaatggaacagagattaact
tgttaagcgacaatttttaatatacagggttagtatttgctttcttacat
gatccatatatgatattttaggtgaatattcatctgcagatctccatgaa
agttgtaaatacgaatggaaatatgaaaggtcaacttcagagtatatgtt
attcatcagtaattatcaccttttcctatagatcatcttgaggtatgtta
gtgcaatttgtgaagatatgtagtgcatctaccagagtattaaattttct
ggggctttgaataaaccaagaaattacatgagagaattaagaatttaaga
ttcctggtcttgtgtatgtgactgtcttaagatatatcttggaagctgtt
tactacctcttgtcaattatctatcattagcaatattgctaaaaagagga
gctctagttcatgatcaccaaggatatatagaacctgctgcttctctcca
taga
gaattccagggagtagaatcaggtaactatcttgaagttaatcatctttg
gagcacagtctctcaagaaaccagctggccatgttggccagggaaccaag
tgggtaatcttcactctccattccatcctccaagtccacttccagagtct
tcaccccagtagcagactccctgcaggggtctgtctttcctttcttcctc
tattccctagtgacttcagagatcttcatggaaaaccaagcctccctccc
tcctttggttactttcacatacccatcattctagcccatccgaattcctt
catgtcagctcccaatgcctagaaacaagatctgcctgagatcccaattg
ccacagtttcaataacacagaatcactcactgcctggtactgtacaagca
cttcaagttctgaagattcagagaaagcaacaggaaccaagcagtgaaaa
aacacacaaggacacacacacacatacacacacacacacaagacaggacc
agataataacacctagatatccaatcacctgaaacaaagatgctcagcca
ccattcgaacaatactgggaataacatctaggacaacttgtctcttttag
agcccagcaactccgcagtagactctgatacaggcaatatagctgaaaca
tatgacaagggcttcaaaatagccataatgaatatgttcaagacctttaa
agaagatatgaataaaatccataaatagaatctacaaatacacaagcact
ggaaggaaataaagaaaagagtttaaggcattaacttgggagatatcatc
aataaataaaacctaaacttgcataaaatgaaaatgaagagcttaggaat
ttgaaagaaaccttagaggcaagccttcttcatcagaattatcaaagatc
gaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112175056_112176162
seq2: B6Ng01-306A24.b_48_1151 (reverse)

seq1  TCTATATGAGAGAAGCAGCA-GTTCTATAATATCCTT-GTGATCATG-AC  47
      |||||  ||||||||||||| ||||||| |||||||| ||||||||| ||
seq2  TCTAT-GGAGAGAAGCAGCAGGTTCTAT-ATATCCTTGGTGATCATGAAC  48

seq1  T-GAGCTCCTCTTTTT-GCATATTTGCTAATGATAGATAATGGACCAAGA  95
      | |||||||||||||| |||   |||||||||||||||||| || |||||
seq2  TAGAGCTCCTCTTTTTAGCAATATTGCTAATGATAGATAATTGA-CAAGA  97

seq1  GGTAGTAAACAGCTTCCCAGGATATATCCTTAAAGACAGTCACATACAC-  144
      ||||||||||||||| ||| ||||||||  | ||||||||||||||||| 
seq2  GGTAGTAAACAGCTT-CCAAGATATATC--TTAAGACAGTCACATACACA  144

seq1  AGACCAGGAATCTTTAAATTTCTTTATTTCTTCTCATGTAATTTCTTGGT  194
      ||||||||||||||  || ||||| |||   |||||||||||||||||||
seq2  AGACCAGGAATCTT--AAATTCTTAATT--CTCTCATGTAATTTCTTGGT  190

seq1  TTATTCAAAGCCCCAGAAAA-TTAATACTCTGGTAGATGCACTACATATC  243
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTCAAAGCCCCAGAAAATTTAATACTCTGGTAGATGCACTACATATC  240

seq1  TTCACAAATTGCACTAACATACCTCAAGATGATCTATAGGAAAAGGTGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAATTGCACTAACATACCTCAAGATGATCTATAGGAAAAGGTGAT  290

seq1  AATTACTGATGAATAACATATACTCTGAAGTTGAACCTTCATATTTCCAT  343
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  AATTACTGATGAATAACATATACTCTGAAGTTGACCTTTCATATTTCCAT  340

seq1  TCGTATTTACAACTTTCATGGAGATCTGCAGATGAATATTCACCTAAAAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATTTACAACTTTCATGGAGATCTGCAGATGAATATTCACCTAAAAT  390

seq1  ATCATATATGGATCATGTAAGAAAGCAAATACTAACCCTGTATATTAAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATGGATCATGTAAGAAAGCAAATACTAACCCTGTATATTAAAA  440

seq1  ATTGTCGCTTAACAAGTTAATCTCTGTTCCATTAGGACAGCACTTCCTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCGCTTAACAAGTTAATCTCTGTTCCATTAGGACAGCACTTCCTTC  490

seq1  TAACATGGATTCTCTATGCTTCATTTCCTCCCTCATGCATTTTTCAACAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGATTCTCTATGCTTCATTTCCTCCCTCATGCATTTTTCAACAA  540

seq1  GAGTGACCCAGATATGGTCAGTTCATCATCATTGAAATATACCAATGTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCCAGATATGGTCAGTTCATCATCATTGAAATATACCAATGTAA  590

seq1  TGTAAGGATCGAAGAAACATGCAAGAAACATGCTCTTTCTGTATCCTGGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGATCGAAGAAACATGCAAGAAACATGCTCTTTCTGTATCCTGGG  640

seq1  AAGTTTTACAATTATCATTCTGAAATGATTATGAATCCATCTACTTTGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTACAATTATCATTCTGAAATGATTATGAATCCATCTACTTTGCC  690

seq1  ATATTATATCTTTCTGTTTGTGCTTGTGCATGATTTATTGATGTAAGGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATCTTTCTGTTTGTGCTTGTGCATGATTTATTGATGTAAGGAA  740

seq1  AATAAATACTATATTTCAAATCTTTAAATTATTTAAAACATGTCTTTTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACTATATTTCAAATCTTTAAATTATTTAAAACATGTCTTTTGT  790

seq1  GTATAGAAATAAACAATGTAAAACCTTGAGCAGCTTCTATAATTTAAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAATAAACAATGTAAAACCTTGAGCAGCTTCTATAATTTAAAAT  840

seq1  ACAACCAGAATGACTTTTTAAATCTTATAGGAAGTTTTAAGAAAAAATTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGAATGACTTTTTAAATCTTATAGGAAGTTTTAAGAAAAAATTC  890

seq1  AGTCAAGAAACTGATTTTAGCAAATCTTTAGTACAGCAACATATGGCTAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAAACTGATTTTAGCAAATCTTTAGTACAGCAACATATGGCTAA  940

seq1  TTCTTGGGCCAAGTTACTTTTTCCAAATGTTGCAAGGCCTTTTGAAAAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGCCAAGTTACTTTTTCCAAATGTTGCAAGGCCTTTTGAAAAAT  990

seq1  TTTCACAGATTTTTTTATGTTTACAACTCATAGATAATTCAAAGATAGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGATTTTTTTATGTTTACAACTCATAGATAATTCAAAGATAGAA  1040

seq1  AAGGCCATTTAGTTTATAGCTTCAAATACACAACGAAGCAAGAAGACATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATTTAGTTTATAGCTTCAAATACACAACGAAGCAAGAAGACATT  1090

seq1  AAAGCATAGAATTC  1107
      ||||||||||||||
seq2  AAAGCATAGAATTC  1104

seq1: chr14_112050646_112051201
seq2: B6Ng01-306A24.g_66_621

seq1  GAATTCCAGGGAGTAGAATCAGGTAACTATCTTGAAGTTAATCATCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGTAGAATCAGGTAACTATCTTGAAGTTAATCATCTTTG  50

seq1  GAGCACAGTCTCTCAAGAAACCAGCTGGCCATGTTGGCCAGGGAACCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGTCTCTCAAGAAACCAGCTGGCCATGTTGGCCAGGGAACCAAG  100

seq1  TGGGTAATCTTCACTCTCCATTCCATCCTCCAAGTCCACTTCCAGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATCTTCACTCTCCATTCCATCCTCCAAGTCCACTTCCAGAGTCT  150

seq1  TCACCCCAGTAGCAGACTCCCTGCAGGGGTCTGTCTTTCCTTTCTTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCAGTAGCAGACTCCCTGCAGGGGTCTGTCTTTCCTTTCTTCCTC  200

seq1  TATTCCCTAGTGACTTCAGAGATCTTCATGGAAAACCAAGCCTCCCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTAGTGACTTCAGAGATCTTCATGGAAAACCAAGCCTCCCTCCC  250

seq1  TCCTTTGGTTACTTTCACATACCCATCATTCTAGCCCATCCGAATTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGTTACTTTCACATACCCATCATTCTAGCCCATCCGAATTCCTT  300

seq1  CATGTCAGCTCCCAATGCCTAGAAACAAGATCTGCCTGAGATCCCAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGCTCCCAATGCCTAGAAACAAGATCTGCCTGAGATCCCAATTG  350

seq1  CCACAGTTTCAATAACACAGAATCACTCACTGCCTGGTACTGTACAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTTCAATAACACAGAATCACTCACTGCCTGGTACTGTACAAGCA  400

seq1  CTTCAAGTTCTGAAGATTCAGAGAAAGCAACAGGAACCAAGCAGTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTTCTGAAGATTCAGAGAAAGCAACAGGAACCAAGCAGTGAAAA  450

seq1  AACACACAAGGACACACACACACATACACACACACACACAAGACAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAAGGACACACACACACATACACACACACACACAAGACAGGACC  500

seq1  AGATAATAACACCTAGATATCCAATCACCTGAAACAAAGATGCTCAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAACACCTAGATATCCAATCACCTGAAACAAAGATGCTCAGCCA  550

seq1  CCATTC  556
      ||||||
seq2  CCATTC  556