BAC Information

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BAC

Clone NameB6Ng01-306C06
Chromosome14 (Build37)
Map Location 74,956,121 - 75,089,925
singlet/doubletdoublet
Overlap geneHtr2a
Upstream geneSucla2, LOC100043734, EG629578, LOC629583
Downstream geneLOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306C06.bB6Ng01-306C06.g
ACCGA099254GA099255
length1,150235
definitionB6Ng01-306C06.b B6Ng01-306C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,956,121 - 74,956,981)(75,089,690 - 75,089,925)
sequence
gaattcccactccacaggaaggaattccagcctgctactgcagactaaga
cagaaacctttggctggtaatgttacaggccttcatggggaaactactgt
tgttgttttcttaagtgaatgtgatgtgcctgttaaattgccttctacaa
gctttttattcccagagaatagctctgctatcagctttgatccaagaagc
ttctttttgccatattattgtcatgcaacaatgactacagagactcataa
ctagtcaaagtaaagataataaatgacctttgaatacacagctttaagtg
agacatatgtagcacccatttcaaggctgagaaatccctgcataagaggc
agaaagaacaggagatcaggagaaatgtggcaatgtgtgaaatgctgact
tctgagtatggcatggctgctgacgtcatctggtattattctacacacaa
tctcctattgattgggtctgtcacactttgtcaaagaaagaggagaggct
catggggccctacctgatgagagtttatatgcaaggtatggataacagga
aagggagagaaaatgtcttctgttgtgtagccacaagcaagatgctcatg
ctcctataaacaaccccagtgaagcttgtagcttatagggtaatgaaaaa
attacacgaaagtaaactgtgtgtggctgggaagaggaaaagggtgagca
gggatttgaagggcaaagaaagggtagttgggttaaatatgatcaaaatg
cttcatgtacatgcatgaaagtgtcacagtgaaagacattatgtataatt
catacatggtaatagaagcactgaaataaaattaaaaagtgctctaattt
ataggaaaggaacatgtggggaaaacatactgcgttgttacactaaaaat
cctgggagtttgaaaggaacagtgtgcaggtatattattttaatgactga
tttttacagaagagcaagcagatctgtatcattttggtgatacccagtgt
gatataaatgctagatccaggctttagctgcatcaaaccttgctgtcatg
agtttgggtaaggttatgtgcaatggtggcttcttgtgagtggcatacaa
agggagctgcagctcgttcgctggattaaagggaggggtatgggtttgga

ctgagaagtggtgccctagccctgtactgtcatggattctcccccaacgt
aagctgtggaggatgtcggggtggggggtggggacagagagcagacaccc
ttagagatgaacgcagacgtttacatttgtgtgtccaagtttagaagagg
tgggctctgccagtactctcatgcataagactgttggatccctgggccta
gatgaacagtgaatgtgttggttatgtgtggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_74956121_74956981
seq2: B6Ng01-306C06.b_322_1193

seq1  TTTGAATACACAGCTTTAAGTGAGACATATGTAGCACCCATTTCAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATACACAGCTTTAAGTGAGACATATGTAGCACCCATTTCAAGGCT  50

seq1  GAGAAATCCCTGCATAAGAGGCAGAAAGAACAGGAGATCAGGAGAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCCCTGCATAAGAGGCAGAAAGAACAGGAGATCAGGAGAAATGT  100

seq1  GGCAATGTGTGAAATGCTGACTTCTGAGTATGGCATGGCTGCTGACGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGTGTGAAATGCTGACTTCTGAGTATGGCATGGCTGCTGACGTCA  150

seq1  TCTGGTATTATTCTACACACAATCTCCTATTGATTGGGTCTGTCACACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTATTATTCTACACACAATCTCCTATTGATTGGGTCTGTCACACTT  200

seq1  TGTCAAAGAAAGAGGAGAGGCTCATGGGGCCCTACCTGATGAGAGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGAAAGAGGAGAGGCTCATGGGGCCCTACCTGATGAGAGTTTAT  250

seq1  ATGCAAGGTATGGATAACAGGAAAGGGAGAGAAAATGTCTTCTGTTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGTATGGATAACAGGAAAGGGAGAGAAAATGTCTTCTGTTGTGT  300

seq1  AGCCACAAGCAAGATGCTCATGCTCCTATAAACAACCCCAGTGAAGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAAGCAAGATGCTCATGCTCCTATAAACAACCCCAGTGAAGCTTG  350

seq1  TAGCTTATAGGGTAATGAAAAAATTACACGAAAGTAAACTGTGTGTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATAGGGTAATGAAAAAATTACACGAAAGTAAACTGTGTGTGGCT  400

seq1  GGGAAGAGGAAAAGGGTGAGCAGGGATTTGAAGGGCAAAGAAAGGGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGAAAAGGGTGAGCAGGGATTTGAAGGGCAAAGAAAGGGTAGT  450

seq1  TGGGTTAAATATGATCAAAATGCTTCATGTACATGCATGAAAGTGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAAATATGATCAAAATGCTTCATGTACATGCATGAAAGTGTCACA  500

seq1  GTGAAAGACATTATGTATAATTCATACATGGTAATAGAAGCACTGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGACATTATGTATAATTCATACATGGTAATAGAAGCACTGAAATA  550

seq1  AAATTAAAAAGTGCTCTAATTTATAGGAAAGGAACATGTGGGGAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAGTGCTCTAATTTATAGGAAAGGAACATGTGGGGAAAACAT  600

seq1  ACTGCGTTGTTACACTAAAAATCCT-GGAGTTTG-AAGGAACAGTGTGCA  648
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  ACTGCGTTGTTACACTAAAAATCCTGGGAGTTTGAAAGGAACAGTGTGCA  650

seq1  GGTATAT--ATTTAATGACTGA-TTTTACAGAAGAGCAAGCAGATCTGTA  695
      |||||||   |||||||||||| |||||||||||||||||||||||||||
seq2  GGTATATTATTTTAATGACTGATTTTTACAGAAGAGCAAGCAGATCTGTA  700

seq1  TCA-TTTGGTGATACCCAGGTGTGAATATTAATGCTAGATCCAGGCTTTA  744
      ||| |||||||||||||| ||||| |||| ||||||||||||||||||||
seq2  TCATTTTGGTGATACCCA-GTGTG-ATATAAATGCTAGATCCAGGCTTTA  748

seq1  GCTGCCATCAAAACCTTGCTGTCATGAAGTTTGGTAAAGTTATGTGCAAT  794
      |||| |||| |||||||||||||||||  || ||||| ||||||||||||
seq2  GCTG-CATC-AAACCTTGCTGTCATGAGTTTGGGTAAGGTTATGTGCAAT  796

seq1  -GTG--CTCTTGTGAGT-GCATACAAA-GGAGCTGCAGCTCG-TCGCT-G  837
       |||   |||||||||| ||||||||| |||||||||||||| ||||| |
seq2  GGTGGCTTCTTGTGAGTGGCATACAAAGGGAGCTGCAGCTCGTTCGCTGG  846

seq1  ATTTAAGGGA-GGGTAT-GGTTTGGA  861
      ||| |||||| |||||| ||||||||
seq2  ATTAAAGGGAGGGGTATGGGTTTGGA  872

seq1: chr14_75089690_75089925
seq2: B6Ng01-306C06.g_69_303 (reverse)

seq1  CAGACCACACATATCCAACACATTCACTGTTCATCTAGGCCCAGGGATCC  50
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAACCACACATAACCAACACATTCACTGTTCATCTAGGCCCAGGGATCC  50

seq1  AACATGTCTTATGCATGAGAGTACTGGCAGAGCCCACCTCTTCTAAACTT  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACA-GTCTTATGCATGAGAGTACTGGCAGAGCCCACCTCTTCTAAACTT  99

seq1  GGACACACAAATGTAAACGTCTGCGTTCATCTCTAAGGGTGTCTGCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACAAATGTAAACGTCTGCGTTCATCTCTAAGGGTGTCTGCTCTC  149

seq1  TGTCCCCACCCCCCACCCCGACATCCTCCACAGCTTACGTTGGGGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCACCCCCCACCCCGACATCCTCCACAGCTTACGTTGGGGGAGAA  199

seq1  TCCATGACAGTACAGGGCTAGGGCACCACTTCTCAG  236
      ||||||||||||||||||||||||||||||||||||
seq2  TCCATGACAGTACAGGGCTAGGGCACCACTTCTCAG  235