BAC Information

Click to search

BAC

Clone NameB6Ng01-307L14
Chromosome14 (Build37)
Map Location 78,646,540 - 78,799,190
singlet/doubletdoublet
Overlap geneTnfsf11
Upstream geneD230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneLOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307L14.bB6Ng01-307L14.g
ACCGA100421GA100422
length1,1641,162
definitionB6Ng01-307L14.b B6Ng01-307L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,798,030 - 78,799,190)(78,646,540 - 78,647,685)
sequence
gaattcttctttgagtcatggaattgtttctacatcatatgcagtttacc
taaagggaataacaaaaggtgtaaggtaaaagcaaggaaactgttctgca
atacaaaagcaacccggggcactggcttcccaacacagagagtctgtata
cagtttattatcacaaaatctctataaagcagattctaacatgctctccc
ctttaaaggacagccttgggtatgttaagtaagtaatccatggttaaaat
gtgaagagatggggccatggttcaatgcacattgtccaagtcttctattg
ccttttgtgagcagtgttaaccataaggaaggaagtgtgttcttgcacca
gaagcaaagaacaaaaggtagtgggaaataattgcatctatggccatgaa
gccagtttttcttttcttaaaaggaagggaaattatcaaatacacatgct
ataaaacattctggagaaaaaaaataatttgcaggtacatttaggacttg
ggatctgtttctctcctctttggatcccatccctggtgccaagtgtactt
ttagcctcctgtacagcacctgcactgtaattagtaaaacacacacacac
acacacacacacacacacacacacacacacacacacacacacacaccctc
agaaaaaaataatgtgcaaaggctagagtaacctcccaaaggctactttc
ctgagtagatctcaatggcttaaaagcatcactggttttgcaagatgcat
cttgcaaaaggtacagagggtctgaaatcaggctgcctgactttgaggcc
agattctccactgcctttgcctgagtctgtgaggacaaactatctaaccc
atgtaatcttatgtcttcaccagcaaccccgggggataaataatatcaat
gagcagttgggcctttctatctgtgagtactgcaggagtggattcactaa
ctacagatcaaaagcacacagacaaacaattgtgtctgtattgaaaacac
aggctttccttcttgttaattattcctaaagaacatgcctagagtaacct
actgactttgtgtttgtcattgtacgctgtcagagaggatgtaaagtggt
tgtcagataccttgtgtaggtatgtgtgccaacacacatggcagttggaa
ttagaacttgggtt
gaattcagtagtgatgacccacagtctgagcaatcctcatgtaatatgca
tatccctttgtctaacagaggcaacatctctgcctcttaaatcgtcttct
gctccagtaagcaagcggtggcaagctgggagcactgaacccagagaagt
tgcaatcgagagtgtgcctgccctgagtggtgggcatgtggcgaaggaaa
actgaactattgaagacagttgagcaagaattctcttgcatggccaatct
tcatgttattgtattttctgtttacgtctattttcttcttcaacttcaaa
tgaaagtcgttagaggcagagattgcatcggtgggtgctggtcagaggcc
aattgactttctgatgttcctgcatttcagcagccagctaaaatatgccc
attcgggggcctgggtaggagatgatttgagaccagactctgggaaaaaa
atctgagttcccctgcgctcatcaatgatttattgctgcttgaagcagaa
ctagctttcctgcaaagctatacttacaaccagaccaattgagtctgaca
gagcagaggctaaaattattgatgagaagactaaggaccacatttgagaa
gtttattcttttggtgcagtttcaaggtgggcgtgtgagtgccttcttca
gcgtgttcccaccctgcagctcatggtagtctaaaccaggagcatctaag
gcaaggctgaggagtggagccgctgaggagaaaccttatgcacagtttca
ttctgttaggcacaatcacaagactatgacacgctttcctaataacacgc
attccactcttaaagctatcctggagattcgggagactcgctgggtcttt
tgtttttaaacgtaggaacgtaggaaagagcatcctttgactcatctaat
ttgggaaagcaagggtaacaagctacactgctggggtttcccacagctta
aacagtgcttccctacggtattaaacctcatctggccgttacccctaaac
cactccctttcagctgcccacctcagtatctgcacagttgtgtggctagg
gtgcccattaaaaatagactacacttatgggtgatagcagcacaagcaat
taccatgtgccttgccagggttagcacaagttcctcacattggctagagg
ttcaagaaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78798030_78799190
seq2: B6Ng01-307L14.b_44_1207 (reverse)

seq1  AACCCAAGTTCTAATTCAAACTGGCATGGTGTGTTTGCACATA-ACCTAC  49
      ||||||||||||||||| ||||| ||| ||||||| ||||| | ||||||
seq2  AACCCAAGTTCTAATTCCAACTGCCAT-GTGTGTTGGCACACATACCTAC  49

seq1  ACAGGTTATCTGACA--CACTTTACATCCTCTCTGAACAGCGTACAATGA  97
      ||| | |||||||||  |||||||||||||||||| ||||||||||||||
seq2  ACAAGGTATCTGACAACCACTTTACATCCTCTCTG-ACAGCGTACAATGA  98

seq1  CAAACACAAAGTCAGTA-GTTACTCTA-GCATGTTCTTTAGGGAATAA-T  144
      ||||||||||||||||| ||||||||| |||||||||||| ||||||| |
seq2  CAAACACAAAGTCAGTAGGTTACTCTAGGCATGTTCTTTA-GGAATAATT  147

seq1  GACAAGAA-GAAAGCCTGTGTTTTCAATACAGACACAATTTGTTTTGTCT  193
       ||||||| |||||||||||||||||||||||||||||||   |||||||
seq2  AACAAGAAGGAAAGCCTGTGTTTTCAATACAGACACAATT--GTTTGTCT  195

seq1  GTGTGCTTTTGATCTGTAGTTAGTTGAATCCACTCCTGCAGTACTCACAG  243
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTGCTTTTGATCTGTAGTTAG-TGAATCCACTCCTGCAGTACTCACAG  244

seq1  ATAGAAAGGCCCAACTGCTCATTGATATTATTTAT-CCCCGGGGTTGCTG  292
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAGAAAGGCCCAACTGCTCATTGATATTATTTATCCCCCGGGGTTGCTG  294

seq1  GTGAAGACATAAGATTACATGGGTTAGATAGTTTGTCCTCACAGACTCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACATAAGATTACATGGGTTAGATAGTTTGTCCTCACAGACTCAG  344

seq1  GC-AAGGCAGTGGAGAATCTGGCCTCAAAGTCAGGCAGCCTGATTTCAGA  391
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCAGTGGAGAATCTGGCCTCAAAGTCAGGCAGCCTGATTTCAGA  394

seq1  CCCTCTGTACCTTTTGCAAGATGCATCTTGCAAAACCAGTGATGCTTTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTACCTTTTGCAAGATGCATCTTGCAAAACCAGTGATGCTTTTA  444

seq1  AGCCATTGAGATCTACTCAGGAAAGTAGCCTTTGGGAGGTTACTCTAGCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGAGATCTACTCAGGAAAGTAGCCTTTGGGAGGTTACTCTAGCC  494

seq1  TTTGCACATTATTTTTTTCTGAGGGTGTGTGTGTGTGTGTGTGTGTGTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACATTATTTTTTTCTGAGGGTGTGTGTGTGTGTGTGTGTGTGTGT  544

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTACTAATTACAGTGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTACTAATTACAGTGCA  594

seq1  GGTGCTGTACAGGAGGCTAAAAGTACACTTGGCACCAGGGATGGGATCCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTACAGGAGGCTAAAAGTACACTTGGCACCAGGGATGGGATCCA  644

seq1  AAGAGGAGAGAAACAGATCCCAAGTCCTAAATGTACCTGCAAATTATTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAGAAACAGATCCCAAGTCCTAAATGTACCTGCAAATTATTTT  694

seq1  TTTTCTCCAGAATGTTTTATAGCATGTGTATTTGATAATTTCCCTTCCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCAGAATGTTTTATAGCATGTGTATTTGATAATTTCCCTTCCTT  744

seq1  TTAAGAAAAGAAAAACTGGCTTCATGGCCATAGATGCAATTATTTCCCAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAGAAAAACTGGCTTCATGGCCATAGATGCAATTATTTCCCAC  794

seq1  TACCTTTTGTTCTTTGCTTCTGGTGCAAGAACACACTTCCTTCCTTATGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTGTTCTTTGCTTCTGGTGCAAGAACACACTTCCTTCCTTATGG  844

seq1  TTAACACTGCTCACAAAAGGCAATAGAAGACTTGGACAATGTGCATTGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTGCTCACAAAAGGCAATAGAAGACTTGGACAATGTGCATTGAA  894

seq1  CCATGGCCCCATCTCTTCACATTTTAACCATGGATTACTTACTTAACATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCCCATCTCTTCACATTTTAACCATGGATTACTTACTTAACATA  944

seq1  CCCAAGGCTGTCCTTTAAAGGGGAGAGCATGTTAGAATCTGCTTTATAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGCTGTCCTTTAAAGGGGAGAGCATGTTAGAATCTGCTTTATAGA  994

seq1  GATTTTGTGATAATAAACTGTATACAGACTCTCTGTGTTGGGAAGCCAGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTGATAATAAACTGTATACAGACTCTCTGTGTTGGGAAGCCAGT  1044

seq1  GCCCCGGGTTGCTTTTGTATTGCAGAACAGTTTCCTTGCTTTTACCTTAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGGGTTGCTTTTGTATTGCAGAACAGTTTCCTTGCTTTTACCTTAC  1094

seq1  ACCTTTTGTTATTCCCTTTAGGTAAACTGCATATGATGTAGAAACAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGTTATTCCCTTTAGGTAAACTGCATATGATGTAGAAACAATTC  1144

seq1  CATGACTCAAAGAAGAATTC  1161
      ||||||||||||||||||||
seq2  CATGACTCAAAGAAGAATTC  1164

seq1: chr14_78646540_78647685
seq2: B6Ng01-307L14.g_70_1231

seq1  GAATTCAGTAGTGATGACCCACAGTCTGAGCAATCCTCATGTAATATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTGATGACCCACAGTCTGAGCAATCCTCATGTAATATGCA  50

seq1  TATCCCTTTGTCTAACAGAGGCAACATCTCTGCCTCTTAAATCGTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTTGTCTAACAGAGGCAACATCTCTGCCTCTTAAATCGTCTTCT  100

seq1  GCTCCAGTAAGCAAGCGGTGGCAAGCTGGGAGCACTGAACCCAGAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTAAGCAAGCGGTGGCAAGCTGGGAGCACTGAACCCAGAGAAGT  150

seq1  TGCAATCGAGAGTGTGCCTGCCCTGAGTGGTGGGCATGTGGCGAAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCGAGAGTGTGCCTGCCCTGAGTGGTGGGCATGTGGCGAAGGAAA  200

seq1  ACTGAACTATTGAAGACAGTTGAGCAAGAATTCTCTTGCATGGCCAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTATTGAAGACAGTTGAGCAAGAATTCTCTTGCATGGCCAATCT  250

seq1  TCATGTTATTGTATTTTCTGTTTACGTCTATTTTCTTCTTCAACTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTATTGTATTTTCTGTTTACGTCTATTTTCTTCTTCAACTTCAAA  300

seq1  TGAAAGTCGTTAGAGGCAGAGATTGCATCGGTGGGTGCTGGTCAGAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCGTTAGAGGCAGAGATTGCATCGGTGGGTGCTGGTCAGAGGCC  350

seq1  AATTGACTTTCTGATGTTCCTGCATTTCAGCAGCCAGCTAAAATATGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTTTCTGATGTTCCTGCATTTCAGCAGCCAGCTAAAATATGCCC  400

seq1  ATTCGGGGGCCTGGGTAGGAGATGATTTGAGACCAGACTCTGGGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGGGGCCTGGGTAGGAGATGATTTGAGACCAGACTCTGGGAAAAAA  450

seq1  ATCTGAGTTCCCCTGCGCTCATCAATGATTTATTGCTGCTTGAAGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTTCCCCTGCGCTCATCAATGATTTATTGCTGCTTGAAGCAGAA  500

seq1  CTAGCTTTCCTGCAAAGCTATACTTACAACCAGACCAATTGAGTCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTCCTGCAAAGCTATACTTACAACCAGACCAATTGAGTCTGACA  550

seq1  GAGCAGAGGCTAAAATTATTGATGAGAAGACTAAGGACCACATTTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGGCTAAAATTATTGATGAGAAGACTAAGGACCACATTTGAGAA  600

seq1  GTTTATTCTTTTGGTGCAGTTTCAAGGTGGGCGTGTGAGTGCCTTCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCTTTTGGTGCAGTTTCAAGGTGGGCGTGTGAGTGCCTTCTTCA  650

seq1  GCGTGTTCCCACCCTGCAGCTCATGGTAGTCTAAACCAGGAGCATCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTCCCACCCTGCAGCTCATGGTAGTCTAAACCAGGAGCATCTAAG  700

seq1  GCAAGGCTGAGGAGTGGAGCCGCTGAGGAGAAACCTTATGCACAGTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTGAGGAGTGGAGCCGCTGAGGAGAAACCTTATGCACAGTTTCA  750

seq1  TTCTGTTAGGCACAATCACAAGACTATGACACGCTTTCCTAATAACACGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAGGCACAATCACAAGACTATGACACGCTTTCCTAATAACACGC  800

seq1  ATTCCACTCTTAAAGCTATCCTGGAGATTCGGGAGACTCGCTGGGTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTCTTAAAGCTATCCTGGAGATTCGGGAGACTCGCTGGGTCTTT  850

seq1  TGTTTTTAAACGTAGGAACGTAGGAAAGAGCATCC-TTGACTCATCTAAT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTTTTAAACGTAGGAACGTAGGAAAGAGCATCCTTTGACTCATCTAAT  900

seq1  T--GGGAAGCAAGGGTAACAAGCTACACTGCT-GGGTTTCCCACAGC-TA  945
      |  || |||||||||||||||||||||||||| |||||||||||||| ||
seq2  TTGGGAAAGCAAGGGTAACAAGCTACACTGCTGGGGTTTCCCACAGCTTA  950

seq1  AACAGTGCTT-CCTACGGTATT-AACCTCATCT-GCCGTAACCC--TAAC  990
      |||||||||| ||||||||||| |||||||||| ||||| ||||   |||
seq2  AACAGTGCTTCCCTACGGTATTAAACCTCATCTGGCCGTTACCCCTAAAC  1000

seq1  CACTCCC-TTCAGCTGCCCA-CTCAGTATCTGCACAGTTGTGTGCTAAGG  1038
      ||||||| |||||||||||| |||||||||||||||||||||||   |||
seq2  CACTCCCTTTCAGCTGCCCACCTCAGTATCTGCACAGTTGTGTGGCTAGG  1050

seq1  GTG-CCATTAAAAATAGACTACAACTAATGGTGGTAGCAGCACCAGCAA-  1086
      ||| |||||||||||||||||||  ||  |||| ||||||||| ||||| 
seq2  GTGCCCATTAAAAATAGACTACACTTATGGGTGATAGCAGCACAAGCAAT  1100

seq1  TACCATGTGC--TG-CAGGGTTTAAGCACCAATTTCCTCACA-TGGCTAG  1132
      ||||||||||  || |||||||  |||| ||| ||||||||| |||||||
seq2  TACCATGTGCCTTGCCAGGGTT--AGCA-CAAGTTCCTCACATTGGCTAG  1147

seq1  AAGTTCAAG-ACCAG  1146
      | ||||||| |||||
seq2  AGGTTCAAGAACCAG  1162