BAC Information

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BAC

Clone NameB6Ng01-308E09
Chromosome14 (Build37)
Map Location 9,957,976 - 9,959,115
singlet/doubletsinglet
Overlap geneLOC100041948
Upstream genePxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308E09.bB6Ng01-308E09.g
ACCGA100817GA100818
length1,1421,164
definitionB6Ng01-308E09.b B6Ng01-308E09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttctacctcctttgtgttgttgtctgatctgagaaggtatac
tctaagaagcagggagatcatttctaatccatatcatgatgataacaaca
aacactgtgactgctatctcacgatggaggcactcactaaattttctgtc
attcccaacaaataagatgtgtgctaccaacatatgcacagcatgaagct
atctctttgaggtaatgatcacgggcctagaggattttaggctagagatg
ggagaagtgcctaagtcccatggaggtgactatatagataatatatcacc
acattattgttgtggctttacctgaatttgggtggatttgtgtgtctttg
ttggcactaaaaatttctggaaatataataaatatattggcattgtggaa
tagagacaggaaggaaggggagaaaacagaagaatcactgtcttgtttcg
acttgcaaaatacatgccagttgccattgaaaacaatcttccctatcagt
cacccccaactgttggaaataagataataataaatgcaagaatccagtaa
aagtaagacagtccttaatgtgcaattctatggaaagtagcaacagcata
gagaaagaaaaagggcttgcacactgatctggagcagacaattttcattg
atggagagaaactttgatcatcttttcctataaaccagattttaactcct
tccaaattccctatctaagtgcaaattctcaggcaatgaacaatatgggg
cctaattctgcctctgtccgctttctgatcctgggcttagtcatagaatc
tctacaaccccaagagtcctgagacaggtaaaggccagcctccagccagg
gaaagggggacctggagcctcgtataactctgataaactccaagctcttc
ccacatggaaaatggtcctaacaatatgtttcttacactatcattttccc
tcttctgattcatcagcagtgttcttcttcagggatcatggaaactacac
attaaagtaatcacagagcatcaccagaaagcaaacatcagaacactgca
taggtagaatagacatcattagacaggccttgtggaggtggatcaactct
gtttttgggggaagtgtcccaagtccctcttattaaaacaaa
gaattccaagctcagggtcagcttcaaggattttctgggaaccattagaa
cactggtggaggcttagctatatgtcaaaatcaatacttaaaggcactta
taataaaacaatactgaaagagaacacacagatccatgcaccagactaat
gcggggacagagtttgagtatacgggctattggaatgccaaggttccagg
aggctgtttttgtgaaactctttgcctcctgactgcttccaggcttttag
gcctaccaagaagactttactggagtgaacgtagcagatccccaggtgat
gaagtctctggatggcctttccttcactctctgctccacaatttgtctct
gcatttttttccatgagtattttttccctcttctaagaaggatcgaagca
tccacactttggtattctttcttctttttgagcttcatgtgatctatgaa
ttgtatttaggaattttgagatttgggctaatatctactcatcagtgaat
gcataccatgtgagttcttttgtgactgggttacctcactcaggatgata
ttttctagttccatccattggctaacaattttatgaagtaattgtcttaa
gagctgactagtactgaattgtgtaaatgtatcacattttctgtattcat
tcttctgttgagggacatctaggttctttacagcttctagttattatata
taaggctgctatgaacacagtggagcatgtgttcttcttatatgttgaac
atcttttgggtaaatgcccaggactggtatagctgagtccataggtaata
ctatgtccaattttctgaggaaccaccaaactgatttccagagtggttgt
accggtttgcaattccaccaatagtggaggaatgttcctctttttccaca
tccttgacagcatctgatgtcacctgagtttttgatcttagccattctga
ctgtgtgaggtagatctcaggtgttttgatttgtgtttccctgatgactg
agatgtaaatttctttaggtgctctggtcatcagtttcacagtcagattt
gttgttgccaatttttatttggctattggttttctggagtctaactcctg
agttcaatggatatgaattcacctcaatcgaaatagggttgataaagagt
tttcccgaagtcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_9957976_9959115
seq2: B6Ng01-308E09.b_45_1186 (reverse)

seq1  TTTGTATTAATAAGAGGGACTT-AGACACTTCCCCC-AAAACAGAGTTTG  48
      ||||| ||||||||||||||||  |||||||||||| |||||||||||  
seq2  TTTGTTTTAATAAGAGGGACTTGGGACACTTCCCCCAAAAACAGAGTT--  48

seq1  AATCCACCTCCACAAGG-CTGTCTAATGATGTCTA-TCTACCCTATGCAG  96
       |||||||||||||||| ||||||||||||||||| |||| |||||||||
seq2  GATCCACCTCCACAAGGCCTGTCTAATGATGTCTATTCTA-CCTATGCAG  97

seq1  TG-TCTGATGTTTGCCTTTCTGGTGATGCTCTGTGATTACTTTAATGTGT  145
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTCTGATGTTTG-CTTTCTGGTGATGCTCTGTGATTACTTTAATGTGT  146

seq1  AGTTTCCATGATCCCTGAAGAAGAACACTGCTGATGAATCAGAAGAGGGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATGATCCCTGAAGAAGAACACTGCTGATGAATCAGAAGAGGGA  196

seq1  AAATGATAGTGTAAGAAACATATTGTTAGGACCATTTTCCATGTGGGAAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGTGTAAGAAACATATTGTTAGGACCATTTTCCATGTGGGAAG  246

seq1  AGCTTGGAGTTTATCAGAGTTATACGAGGCTCCAGGTCCCCCTTTCCCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGAGTTTATCAGAGTTATACGAGGCTCCAGGTCCCCCTTTCCCTG  296

seq1  GCTGGAGGCTGGCC-TTACCTGTCTCAGGACTCTTGGGGTTGTAGAGATT  344
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGCTGGCCTTTACCTGTCTCAGGACTCTTGGGGTTGTAGAGATT  346

seq1  CTATGACTAAGCCCAGGATCAGAAAGCGGACAGAGGCAGAATTAGGCCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACTAAGCCCAGGATCAGAAAGCGGACAGAGGCAGAATTAGGCCCC  396

seq1  ATATTGTTCATTGCCTGAGAATTTGCACTTAGATAGGGAATTTGGAAGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTCATTGCCTGAGAATTTGCACTTAGATAGGGAATTTGGAAGGA  446

seq1  GTTAAAATCTGGTTTATAGGAAAAGATGATCAAAGTTTCTCTCCATCAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATCTGGTTTATAGGAAAAGATGATCAAAGTTTCTCTCCATCAAT  496

seq1  GAAAATTGTCTGCTCCAGATCAGTGTGCAAGCCCTTTTTCTTTCTCTATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTCTGCTCCAGATCAGTGTGCAAGCCCTTTTTCTTTCTCTATG  546

seq1  CTGTTGCTACTTTCCATAGAATTGCACATTAAGGACTGTCTTACTTTTAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTACTTTCCATAGAATTGCACATTAAGGACTGTCTTACTTTTAC  596

seq1  TGGATTCTTGCATTTATTATTATCTTATTTCCAACAGTTGGGGGTGACTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTTGCATTTATTATTATCTTATTTCCAACAGTTGGGGGTGACTG  646

seq1  ATAGGGAAGATTGTTTTCAATGGCAACTGGCATGTATTTTGCAAGTCGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAGATTGTTTTCAATGGCAACTGGCATGTATTTTGCAAGTCGAA  696

seq1  ACAAGACAGTGATTCTTCTGTTTTCTCCCCTTCCTTCCTGTCTCTATTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAGTGATTCTTCTGTTTTCTCCCCTTCCTTCCTGTCTCTATTCC  746

seq1  ACAATGCCAATATATTTATTATATTTCCAGAAATTTTTAGTGCCAACAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCCAATATATTTATTATATTTCCAGAAATTTTTAGTGCCAACAAA  796

seq1  GACACACAAATCCACCCAAATTCAGGTAAAGCCACAACAATAATGTGGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAAATCCACCCAAATTCAGGTAAAGCCACAACAATAATGTGGTG  846

seq1  ATATATTATCTATATAGTCACCTCCATGGGACTTAGGCACTTCTCCCATC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATCTATATAGTCACCTCCATGGGACTTAGGCACTTCTCCCATC  896

seq1  TCTAGCCTAAAATCCTCTAGGCCCGTGATCATTACCTCAAAGAGATAGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTAAAATCCTCTAGGCCCGTGATCATTACCTCAAAGAGATAGCT  946

seq1  TCATGCTGTGCATATGTTGGTAGCACACATCTTATTTGTTGGGAATGACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGTGCATATGTTGGTAGCACACATCTTATTTGTTGGGAATGACA  996

seq1  GAAAATTTAGTGAGTGCCTCCATCGTGAGATAGCAGTCACAGTGTTTGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTAGTGAGTGCCTCCATCGTGAGATAGCAGTCACAGTGTTTGTT  1046

seq1  GTTATCATCATGATATGGATTAGAAATGATCTCCCTGCTTCTTAGAGTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATCATGATATGGATTAGAAATGATCTCCCTGCTTCTTAGAGTAT  1096

seq1  ACCTTCTCAGATCAGACAACAACACAAAGGAGGTAGAAATGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCAGATCAGACAACAACACAAAGGAGGTAGAAATGAATTC  1142