BAC Information

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BAC

Clone NameB6Ng01-308G17
Chromosome14 (Build37)
Map Location 35,819,465 - 35,955,771
singlet/doubletdoublet
Overlap geneGrid1
Upstream geneEG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308G17.bB6Ng01-308G17.g
ACCGA100927GA100928
length1,2001,130
definitionB6Ng01-308G17.b B6Ng01-308G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,954,569 - 35,955,771)(35,819,465 - 35,820,589)
sequence
gaattccaggtagggctgccccttgccaccccctcccccgaagagtgggt
cagaggcttagatgcccacccagggatgagtagaaggtagatagcagccc
tcccacacctgacagaccagagaagaggtaaaactctggcggggtgtggg
tctccccttccccagggcatcccctgggctctcctttttggttcccaaca
gagggcgtaaccggaaagtgggatatcatttgagatataaacaaatggaa
taattaataataataataataatgaggcctgtcggcaactggcattatct
cctagcaggagcaggatggaggagtatcattggaccttcacctgaatatc
tggccactcccataaatatttgtctgcagatctgccctaattacatatgg
ctctgaaacctggagggtggcaacagtatagaggcaaaagaagcctagga
gaaggaagcctccatctatgaggccaggaagcagttcacattcatgctat
atagtctatggtgctgcatatgggcctgtctgtctccttcctgtatatcc
ctccggagctgagaagagcaaccggcacaaagtaggacctcaatatgcac
aggatggacgcccacgatgtgactgaatggtcctgagtcttcctttgctg
catctcatgtctcttcaccttctgtgacatcttgttttcaaggactctag
agaatgactggctataaacctatcatgttcttttatgtgtaccttaataa
ggtacacttattaataaggaacactttaatgtccataaccatgtggctaa
gaaaccatgggtttagaatcaaagacattttcccatactcattatcctta
ggacactgtatcaacattgtcttaaatcttgtgatggctcgttcattcac
ccttcaacaagccttttctgaatgttgctttgtgccggtccctaaaatag
aaaggatcagagactcccaggaaaagtttaccttgatcatggctacagag
atcagcagtcatgaggaaaaaaggattggtaccacttgctgtaagtattc
ttcaatttcaaatctgccccagcattactagtataatgagaatatgtact
cctctgagtccagaatccctctatcatctaacttaatacaaccgaaatcc
ttcctagcattggcgtaaattcagagttatctatcacacctttttctaac

gaattcatgctcaacctataagacccactcttgcagtttctcgaacgctg
ttttgagacttttgttgatggtaagcagaccccttcatgagtacttcctg
gcatcccaatgctactgactttcctgtcttcagttcggttctctgaagct
tatctcaggttcttgtcactttctctgacatctgctacagaacatgacct
aattgggcagtagatagagtgttggagaaagcctgagtgagggattgaag
tcagagtattgctgctggggcaacagagatctcttgagtaatgactgggg
caccctgccatttttgggttgtcgatggtcctgggaatcagaagggcctg
gtgtgtagtcggacaacagcgcctttcaggtcggaagaggtggcacccaa
cctgggttgcttctaattcatctcagctgggtgtgctgtttttagtatct
tggatttttcctcagtggtaatttacaggactaatgaggatgccatgttt
cgctgtgtaatggcagttattaatactgatcgcacattagcagctggtaa
tggagtggtcacatctgcatcttcttgccattccggaaagctagactcca
gcatcaggtctctggggagttctgttgagctttggctgagccctctggag
aactgagcttggggttgccaggcccaggtgcgccttacaaggagcaaggt
ctctcctggagacagctgaagttgcaccccgtttctgtttgagccggtga
ctaagctgcaaagtggacatcatctagtcattccttaggggtgttcaggc
ccaggtgaagtctgggctacacgtggttcccagataagcacagagtttgt
gcaccttcctccttcctgtcacctctcaagtgtctctggcttgctggaga
attctgggtttgaacttctattcagtctcttccttgctggataacctcag
aagacatgaggctgtcacggggatggatggatgaagtagtcctatgcaaa
ttactcagtgtagcggcacaaagttcagacctttaaaaagctccttgctg
gtgtactaatcaatctcggcttggtatggagaaaagagtatttcctatgt
ttaattgaatttttttttcctacagactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_35954569_35955771
seq2: B6Ng01-308G17.b_44_1243 (reverse)

seq1  GTTAGAAAA---GGTGATAGATAACTCTTGATATTCACCCAAATGCTAGG  47
      |||||||||    |||||||||||||| ||| ||| || | |||||||||
seq2  GTTAGAAAAAGGTGTGATAGATAACTC-TGA-ATTTACGCCAATGCTAGG  48

seq1  AATATGAATTTTGGTTGTTATTTATGTAGATGAATAGA-GGATCTGGGAC  96
      ||   | |||| ||||| |||| |  |||||| ||||| ||||   ||||
seq2  AA---GGATTTCGGTTG-TATTAAGTTAGATG-ATAGAGGGATTCTGGAC  93

seq1  TCAGA-GAGTACATA-TCTCATTATAACTAAGTAAATGGCTGGGGCAGAT  144
      ||||| ||||||||| ||||||||| ||| |||||   ||||||||||||
seq2  TCAGAGGAGTACATATTCTCATTAT-ACT-AGTAA--TGCTGGGGCAGAT  139

seq1  TTG-AATTGAAGAATACTTAACAGCAAGT-GTACCAATCCTTTTTTCCTC  192
      ||| ||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TTGAAATTGAAGAATACTT-ACAGCAAGTGGTACCAATCCTTTTTTCCTC  188

seq1  ATGAACTGCTGATCTCTGTAGCCATGATC-AGGTAAACTTTTCCTGGG-G  240
      ||| ||||||||||||||||||||||||| |||||||||||||||||| |
seq2  ATG-ACTGCTGATCTCTGTAGCCATGATCAAGGTAAACTTTTCCTGGGAG  237

seq1  TCTCTGATCCTTTCTATTTTAGGGACCGGCACAAAGCAACATTCAGAAAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATCCTTTCTATTTTAGGGACCGGCACAAAGCAACATTCAGAAAA  287

seq1  GGCTTGTTGAAGGGTGAATGAACGAGCCATCACAAGATTTAAGACAATGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTGAAGGGTGAATGAACGAGCCATCACAAGATTTAAGACAATGT  337

seq1  TGATACAGTGTCCTAAGGATAATGAGTATGGGAAAATGTCTTTGATTCTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGTGTCCTAAGGATAATGAGTATGGGAAAATGTCTTTGATTCTA  387

seq1  AACCCATGGTTTCTTAGCCACATGGTTATGGACATTAAAGTGTTCCTTAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGGTTTCTTAGCCACATGGTTATGGACATTAAAGTGTTCCTTAT  437

seq1  TAATAAGTGTACCTTATTAAGGTACACATAAAAGAACATGATAGGTTTAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTGTACCTTATTAAGGTACACATAAAAGAACATGATAGGTTTAT  487

seq1  AGCCAGTCATTCTCTAGAGTCCTTGAAAACAAGATGTCACAGAAGGTGAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCATTCTCTAGAGTCCTTGAAAACAAGATGTCACAGAAGGTGAA  537

seq1  GAGACATGAGATGCAGCAAAGGAAGACTCAGGACCATTCAGTCACATCGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATGAGATGCAGCAAAGGAAGACTCAGGACCATTCAGTCACATCGT  587

seq1  GGGCGTCCATCCTGTGCATATTGAGGTCCTACTTTGTGCCGGTTGCTCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTCCATCCTGTGCATATTGAGGTCCTACTTTGTGCCGGTTGCTCTT  637

seq1  CTCAGCTCCGGAGGGATATACAGGAAGGAGACAGACAGGCCCATATGCAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCCGGAGGGATATACAGGAAGGAGACAGACAGGCCCATATGCAG  687

seq1  CACCATAGACTATATAGCATGAATGTGAACTGCTTCCTGGCCTCATAGAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAGACTATATAGCATGAATGTGAACTGCTTCCTGGCCTCATAGAT  737

seq1  GGAGGCTTCCTTCTCCTAGGCTTCTTTTGCCTCTATACTGTTGCCACCCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTCCTTCTCCTAGGCTTCTTTTGCCTCTATACTGTTGCCACCCT  787

seq1  CCAGGTTTCAGAGCCATATGTAATTAGGGCAGATCTGCAGACAAATATTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTCAGAGCCATATGTAATTAGGGCAGATCTGCAGACAAATATTT  837

seq1  ATGGGAGTGGCCAGATATTCAGGTGAAGGTCCAATGATACTCCTCCATCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTGGCCAGATATTCAGGTGAAGGTCCAATGATACTCCTCCATCC  887

seq1  TGCTCCTGCTAGGAGATAATGCCAGTTGCCGACAGGCCTCATTATTATTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGCTAGGAGATAATGCCAGTTGCCGACAGGCCTCATTATTATTA  937

seq1  TTATTATTAATTATTCCATTTGTTTATATCTCAAATGATATCCCACTTTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAATTATTCCATTTGTTTATATCTCAAATGATATCCCACTTTC  987

seq1  CGGTTACGCCCTCTGTTGGGAACCAAAAAGGAGAGCCCAGGGGATGCCCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTACGCCCTCTGTTGGGAACCAAAAAGGAGAGCCCAGGGGATGCCCT  1037

seq1  GGGGAAGGGGAGACCCACACCCCGCCAGAGTTTTACCTCTTCTCTGGTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGGAGACCCACACCCCGCCAGAGTTTTACCTCTTCTCTGGTCT  1087

seq1  GTCAGGTGTGGGAGGGCTGCTATCTACCTTCTACTCATCCCTGGGTGGGC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGTGGGAGGGCTGCTATCTACCTTCTACTCATCCCTGGGTGGGC  1137

seq1  ATCTAAGCCTCTGACCCACTCTTCGGGGGAGGGGGTGGCAAGGGGCAGCC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGCCTCTGACCCACTCTTCGGGGGAGGGGGTGGCAAGGGGCAGCC  1187

seq1  CTACCTGGAATTC  1203
      |||||||||||||
seq2  CTACCTGGAATTC  1200

seq1: chr14_35819465_35820589
seq2: B6Ng01-308G17.g_68_1197

seq1  GAATTCATGCTCAACCTATAAGACCCACTCTTGCAGTTTCTCGAACGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTCAACCTATAAGACCCACTCTTGCAGTTTCTCGAACGCTG  50

seq1  TTTTGAGACTTTTGTTGATGGTAAGCAGACCCCTTCATGAGTACTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACTTTTGTTGATGGTAAGCAGACCCCTTCATGAGTACTTCCTG  100

seq1  GCATCCCAATGCTACTGACTTTCCTGTCTTCAGTTCGGTTCTCTGAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCAATGCTACTGACTTTCCTGTCTTCAGTTCGGTTCTCTGAAGCT  150

seq1  TATCTCAGGTTCTTGTCACTTTCTCTGACATCTGCTACAGAACATGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGGTTCTTGTCACTTTCTCTGACATCTGCTACAGAACATGACCT  200

seq1  AATTGGGCAGTAGATAGAGTGTTGGAGAAAGCCTGAGTGAGGGATTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGCAGTAGATAGAGTGTTGGAGAAAGCCTGAGTGAGGGATTGAAG  250

seq1  TCAGAGTATTGCTGCTGGGGCAACAGAGATCTCTTGAGTAATGACTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTATTGCTGCTGGGGCAACAGAGATCTCTTGAGTAATGACTGGGG  300

seq1  CACCCTGCCATTTTTGGGTTGTCGATGGTCCTGGGAATCAGAAGGGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCCATTTTTGGGTTGTCGATGGTCCTGGGAATCAGAAGGGCCTG  350

seq1  GTGTGTAGTCGGACAACAGCGCCTTTCAGGTCGGAAGAGGTGGCACCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAGTCGGACAACAGCGCCTTTCAGGTCGGAAGAGGTGGCACCCAA  400

seq1  CCTGGGTTGCTTCTAATTCATCTCAGCTGGGTGTGCTGTTTTTAGTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTGCTTCTAATTCATCTCAGCTGGGTGTGCTGTTTTTAGTATCT  450

seq1  TGGATTTTTCCTCAGTGGTAATTTACAGGACTAATGAGGATGCCATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTCCTCAGTGGTAATTTACAGGACTAATGAGGATGCCATGTTT  500

seq1  CGCTGTGTAATGGCAGTTATTAATACTGATCGCACATTAGCAGCTGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGTAATGGCAGTTATTAATACTGATCGCACATTAGCAGCTGGTAA  550

seq1  TGGAGTGGTCACATCTGCATCTTCTTGCCATTCCGGAAAGCTAGACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGGTCACATCTGCATCTTCTTGCCATTCCGGAAAGCTAGACTCCA  600

seq1  GCATCAGGTCTCTGGGGAGTTCTGTTGAGCTTTGGCTGAGCCCTCTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGTCTCTGGGGAGTTCTGTTGAGCTTTGGCTGAGCCCTCTGGAG  650

seq1  AACTGAGCTTGGGGTTGCCAGGCCCAGGTGCGCCTTACAAGGAGCAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCTTGGGGTTGCCAGGCCCAGGTGCGCCTTACAAGGAGCAAGGT  700

seq1  CTCTCCTGGGAGACAGCTGAAGTTGCACCCCGTTTCTGTTTGAGCCGGTG  750
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCT-GGAGACAGCTGAAGTTGCACCCCGTTTCTGTTTGAGCCGGTG  749

seq1  ACTAAGCTGCAAAGTGGACATCATCTAGTCATTCCTTAGGGGTGTTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTGCAAAGTGGACATCATCTAGTCATTCCTTAGGGGTGTTCAGG  799

seq1  CCCAGGTGAAGTCTGGGCTACACGTGGTTCCCAGATAAGCACAGAGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGAAGTCTGGGCTACACGTGGTTCCCAGATAAGCACAGAGTTTG  849

seq1  TGCACCTTCCTCCTTCCTGTCACCTCTCAGGTGTCTCTGGCTTGCTGGAG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCACCTTCCTCCTTCCTGTCACCTCTCAAGTGTCTCTGGCTTGCTGGAG  899

seq1  AATTCTGGGTTTGAACTTCTATTCAGTCTCTTCCTTGCTGGATAACCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGGTTTGAACTTCTATTCAGTCTCTTCCTTGCTGGATAACCTCA  949

seq1  GAAGACATGAGGCTGTCACGGGGATGGATGGATGAAGTAGT-CTATGCAA  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAGACATGAGGCTGTCACGGGGATGGATGGATGAAGTAGTCCTATGCAA  999

seq1  ATTACTCAGTGTAGCGGCACAAAG-TCAGACC-TTAAAAAGC-CCCTGCT  1046
      |||||||||||||||||||||||| ||||||| ||||||||| || ||||
seq2  ATTACTCAGTGTAGCGGCACAAAGTTCAGACCTTTAAAAAGCTCCTTGCT  1049

seq1  -GTGTACTAATC-ATCTCGGCTTGGTATGAAGAAAAGAGTATT--CTATG  1092
       ||||||||||| |||||||||||||||| |||||||||||||  |||||
seq2  GGTGTACTAATCAATCTCGGCTTGGTATGGAGAAAAGAGTATTTCCTATG  1099

seq1  GTTTAAATGGATTTTTTTTTTCCTCACAG-CTCT  1125
        || ||| || |||||||||||| |||| ||||
seq2  --TTTAATTGAATTTTTTTTTCCT-ACAGACTCT  1130