BAC Information

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BAC

Clone NameB6Ng01-309M17
Chromosome14 (Build37)
Map Location 45,085,316 - 45,212,778
singlet/doubletdoublet
Overlap geneBC061237, LOC434476, EG666707
Upstream geneLOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
Downstream geneLOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309M17.bB6Ng01-309M17.g
ACCGA101946GA101947
length1,0501,115
definitionB6Ng01-309M17.b B6Ng01-309M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,211,729 - 45,212,778)(45,085,316 - 45,086,060)
sequence
gaattccaaaacattgaatcgttcttacatcctatacatgatgcatattg
gatcatggtgagtgatcatttgcatgtgttattagaaacagtttccaaga
cgttattgagtatttttgcatcaatatttgttatggtttttatatgctca
acccactgagtggcaagataagaaggagaggccaagttagagtatatggg
acactgtgtgtgtggtcaaaacccacgccatagctgcctggacattaaag
ttctattagcagccttcacatgaacatgtaggactctcagcttctcctgt
accatgcctttctggatgcgtccatgtggccaccttgttggcacttgact
gatcctcttaacctgtaaggcatccacatggaattgtaggagaagctgca
gtgcagccagatttggaggagtcccaaaaccctcctgggacaactagtca
tggagtttgttcagcatccatccatctgcagcagttagggtgttcttcag
agtcacatctcttatctaaagcttcgaagaaccacctgtctgagggccag
aagctcttgtgagtatctgctgatgcagagttagaagcaggtctactaag
aactcagcctgatgcacagagtcctaaggggaatcacagcaaatacagag
gtctgaaggaaaggacaaagtacccaaaatctgagtatccaaggctgtat
cctcagattagaaagacaacagaaaaaatggagagggaacccagtaagtg
acaatggggagaagggaggccaggtgttcctggtcatcatgaactctgca
cagagttcacagtaaatttcaatgtggattatgaaagtagaaaatgttca
ctttcttttattacattcaccttgtttgggcagataatccatgcaggaag
gctgagaaatggctaagaaagaaaattgatctcagagaaaacaggaggac
tgggggcttctctagtgtagtatactgtagtgtggtgtgtgcagtgtgtt
gtggtgaagtacagtgtatctcctgaactgttgcctgctgggaatacatg

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcaaggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgaaaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctgtcggttcctca
gaaaattggacatagtactacggaggatccagcaatacctcttctgggca
tatatctagaagaagccacaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataataggcagaaactggaaagaacccagatg
ccctggaggtcatcatcctgagtgaggtaacacattcacaaaggaactca
cacaatatgtactcactgataagtggatattagcccaaaacctaggatac
ccaagatataagatacaatttcctaaacacatgaaactcaagaaaaatga
agactgaagtgtggacactatgcccctccttagaagtgggaacaaaacat
ccttggaaggagttacagagacatagtttggagctgagatgaaagaatgg
accatgtagagattgccatatccagggatccaccccataatcagcatccc
aacgctgacaccattgcatacactagcaagattttgctgaaaggacccag
atatagctgtctcatgtgagactatgctggggcctagcaaacacagaagt
ggatgttcacagtcagctaatggatggatcactgggctccaaatggagga
gctagagaaagtacccaaggagctccctcattagagcagcattctctaac
ctcaagaaatagagatttggtgcaaactagtaagaggccatgaggacttt
gagacagatggtctagggaggaaaagggcaagattagaaagtttgcatct
gagccctttcagaggttttcatgttttttaaatgcctgcacaaacatcca
agataccagtctgtaaatctacaggaaacaaaccgaatccaatgtgaggt
gaaggctgacttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_45211729_45212778
seq2: B6Ng01-309M17.b_46_1095 (reverse)

seq1  CATGTATACCAAGCAGCAAACAGTACAGGAGAATACACTGTACTTCACCA  50
      ||||||| || |||||  |||||| |||||| ||||||||||||||||||
seq2  CATGTATTCCCAGCAGGCAACAGTTCAGGAG-ATACACTGTACTTCACCA  49

seq1  CAACACACTGCACCACACCACACTACAGTATACTACACTAGAGAAG-CCC  99
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  CAACACACTGCA-CACACCACACTACAGTATACTACACTAGAGAAGCCCC  98

seq1  CAGTCCTCCTG-TTTCTCTGAGATCAATTTTCTTTCTTAGCCATTTCTCA  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCCTGTTTTCTCTGAGATCAATTTTCTTTCTTAGCCATTTCTCA  148

seq1  GCCTTCCTGCATGGATTATCTGCCCAAACAAGGTGAATGTAATAAAAGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTGCATGGATTATCTGCCCAAACAAGGTGAATGTAATAAAAGAA  198

seq1  AGTGAACATTTTCTACTTTCATAATCCACATTGAAATTTACTGTGAACTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACATTTTCTACTTTCATAATCCACATTGAAATTTACTGTGAACTC  248

seq1  TGTGCAGAGTTCATGATGACCAGGAACACCTGGCCTCCCTTCTCCCCATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAGTTCATGATGACCAGGAACACCTGGCCTCCCTTCTCCCCATT  298

seq1  GTCACTTACTGGGTTCCCTCTCCATTTTTTCTGTTGTCTTTCTAATCTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTACTGGGTTCCCTCTCCATTTTTTCTGTTGTCTTTCTAATCTGA  348

seq1  GGATACAGCCTTGGATACTCAGATTTTGGGTACTTTGTCCTTTCCTTCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGCCTTGGATACTCAGATTTTGGGTACTTTGTCCTTTCCTTCAG  398

seq1  ACCTCTGTATTTGCTGTGATTCCCCTTAGGACTCTGTGCATCAGGCTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTATTTGCTGTGATTCCCCTTAGGACTCTGTGCATCAGGCTGAG  448

seq1  TTCTTAGTAGACCTGCTTCTAACTCTGCATCAGCAGATACTCACAAGAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTAGACCTGCTTCTAACTCTGCATCAGCAGATACTCACAAGAGC  498

seq1  TTCTGGCCCTCAGACAGGTGGTTCTTCGAAGCTTTAGATAAGAGATGTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCCTCAGACAGGTGGTTCTTCGAAGCTTTAGATAAGAGATGTGA  548

seq1  CTCTGAAGAACACCCTAACTGCTGCAGATGGATGGATGCTGAACAAACTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAACACCCTAACTGCTGCAGATGGATGGATGCTGAACAAACTC  598

seq1  CATGACTAGTTGTCCCAGGAGGGTTTTGGGACTCCTCCAAATCTGGCTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTAGTTGTCCCAGGAGGGTTTTGGGACTCCTCCAAATCTGGCTGC  648

seq1  ACTGCAGCTTCTCCTACAATTCCATGTGGATGCCTTACAGGTTAAGAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCTTCTCCTACAATTCCATGTGGATGCCTTACAGGTTAAGAGGA  698

seq1  TCAGTCAAGTGCCAACAAGGTGGCCACATGGACGCATCCAGAAAGGCATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAAGTGCCAACAAGGTGGCCACATGGACGCATCCAGAAAGGCATG  748

seq1  GTACAGGAGAAGCTGAGAGTCCTACATGTTCATGTGAAGGCTGCTAATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAGAAGCTGAGAGTCCTACATGTTCATGTGAAGGCTGCTAATAG  798

seq1  AACTTTAATGTCCAGGCAGCTATGGCGTGGGTTTTGACCACACACACAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAATGTCCAGGCAGCTATGGCGTGGGTTTTGACCACACACACAGT  848

seq1  GTCCCATATACTCTAACTTGGCCTCTCCTTCTTATCTTGCCACTCAGTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATATACTCTAACTTGGCCTCTCCTTCTTATCTTGCCACTCAGTGG  898

seq1  GTTGAGCATATAAAAACCATAACAAATATTGATGCAAAAATACTCAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCATATAAAAACCATAACAAATATTGATGCAAAAATACTCAATAA  948

seq1  CGTCTTGGAAACTGTTTCTAATAACACATGCAAATGATCACTCACCATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTGGAAACTGTTTCTAATAACACATGCAAATGATCACTCACCATGA  998

seq1  TCCAATATGCATCATGTATAGGATGTAAGAACGATTCAATGTTTTGGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATGCATCATGTATAGGATGTAAGAACGATTCAATGTTTTGGAAT  1048

seq1  TC  1050
      ||
seq2  TC  1050

seq1: chr14_45085316_45086060
seq2: B6Ng01-309M17.g_441_1181

seq1  GGCAGAAACTGGAAAGAACCCAGATGCCCTGGAGGTCATCATCCTGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAACTGGAAAGAACCCAGATGCCCTGGAGGTCATCATCCTGAGTG  50

seq1  AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT  100

seq1  GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT  150

seq1  AAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCC  200

seq1  CCTCCTTAGAAGTGGGAACAAAACATCCTTGGAAGGAGTTACAGAGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTAGAAGTGGGAACAAAACATCCTTGGAAGGAGTTACAGAGACAT  250

seq1  AGTTTGGAGCTGAGATGAAAGAATGGACCATGTAGAGATTGCCATATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGCTGAGATGAAAGAATGGACCATGTAGAGATTGCCATATCCA  300

seq1  GGGATCCACCCCATAATCAGCATCCCAACGCTGACACCATTGCATACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCACCCCATAATCAGCATCCCAACGCTGACACCATTGCATACACT  350

seq1  AGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCATGTGAGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCATGTGAGACTA  400

seq1  TGCTGGGGCCTAGCAAACACAGAAGTGGATGTTCACAGTCAGCTAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGCCTAGCAAACACAGAAGTGGATGTTCACAGTCAGCTAATGGA  450

seq1  TGGATCACTGGGCTCCAAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACTGGGCTCCAAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  500

seq1  CCCTCATTAGAGCAGCATTCTCTAACCTCAAGAAATAGAGATTTGGTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTAGAGCAGCATTCTCTAACCTCAAGAAATAGAGATTTGGTGCA  550

seq1  AACTAGTAAGAGGCCATGAGGACTTTGAGACAGATGGTCTAGGGAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTAAGAGGCCATGAGGACTTTGAGACAGATGGTCTAGGGAGGAAA  600

seq1  AGGGCAAGATTAGAAAGTTTGCATCTGAGGCCCCTTCAGGAGGTTTTCAT  650
      |||||||||||||||||||||||||||| |||| |||| |||||||||||
seq2  AGGGCAAGATTAGAAAGTTTGCATCTGA-GCCCTTTCA-GAGGTTTTCAT  648

seq1  GTTTTTAAAATGCCCTTGCACAAACACCAAAGATACAAGTCTGGTAAATT  700
      |||||| |||||||  |||||||||| | ||||||| ||||| ||||| |
seq2  GTTTTTTAAATGCC--TGCACAAACATCCAAGATACCAGTCT-GTAAA-T  694

seq1  CTACAGGAAACAAACAG-ATCCCATGTGA-GTGGAGGCTGACATCAT  745
      ||||||||||||||| | |||| |||||| ||| |||||||| ||||
seq2  CTACAGGAAACAAACCGAATCCAATGTGAGGTGAAGGCTGACTTCAT  741