BAC Information

Click to search

BAC

Clone NameB6Ng01-310M10
Chromosome14 (Build37)
Map Location 30,803,267 - 30,965,030
singlet/doubletdoublet
Overlap geneActr8, Il17rb, Chdh, Cacna1d
Upstream geneCacna2d3, Lrtm1, Ppia-ps15, EG665431, Selk
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310M10.bB6Ng01-310M10.g
ACCGA102661GA102662
length1,1171,071
definitionB6Ng01-310M10.b B6Ng01-310M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,963,905 - 30,965,030)(30,803,267 - 30,804,329)
sequence
gaattcctgacccacttgctgatattccatgcctcacagtggccaatgaa
atgccctgttacagtagcccctccacccgataccgtctacactggagcag
ctccccagggagagggaggggtcctgagctcctaccctgccctgaactgt
tcaccagatgcagagagaccatgctgttgaggttataggcttctcatggt
gacaggcttctcgaggtggaggggctcatggaggaagcatactgcttctg
atgaactttgacctgaacaactgtgattgataagattcctttgccttctg
ggaaacatcacatttccccgttaactctttacataagtgttttcttgaac
aaagcctgaacttttatgctctccaaaatgttagttgcaagtgcaagaat
attctttgaatgccttaactcacccctccttctgtccttcctttccttcc
tccccccctcccgcaccccctctctccattacttccttgcttcctctcat
tctgtttgaggcaggttctctcgtggcccaggctgaccttggatttggta
tgttgccaaggctgatcttgaagccctaatcctcctgcctctacctccta
catgttagtgttgggctgtaggtgtacacggccttttcattctctgactt
tccctttttgtctgtatatgggtgtgatttaggtctaaggaaggttgttc
tctaccggcagaaaaaacaactttctacttcccccttgcctttgctttca
taaatgttgcttttggttttggacgagtttctgagtcctttattctacta
gaaatcagcatcttagagggtctgttggcttttcttctcttaggactagt
gaatgaatgcatgtgtggatataaaggtggttccatttgcttgtctttaa
tttatgcaagtctgggttaaaaacaagcaagacaagccctgtctctaaat
tagacatttcccagtggcccatttattttagagggcattgagaaaggaac
ttcccagagcagactgcatgtcagcttctacattggggcagtcacattgc
tctgctctgtgtttgagtgcagtgttccgctgcagctactgatctctcct
gggatttgagctaatca
gaattctttgtttgttgggcccagtaatcagatgtctgtcggcttaaact
atagttcgcaaatgctaatctggtaccagtagcccgtggcggagactagg
gttgggaccttgctcagctttgctctgtcctagagacaaaaaggaggtag
attggatctgaggtagaggattctataacaatcactagcctgtgactctc
attcacatacccagtagaaagtcagcttagagagtccgtctctgtcaaca
tctcagggtttttttgttttggtttctctgtatagccctggctatcctgg
aactcactttgtaaaccaggctggcctcgaactcagaaatccgcctgcct
ctgcctcccgagtgctgggattaaaggcgtgcgccaccacacctggctta
acatctcagttttaaagcgcactgactgacggatagtaagggtctagaac
ctgcccacatggccagaacctgccttggccttggcaggcatcctcactgt
atgcccagctcacgtgagcatgggtataggttgtgtgtgctgtggtgatc
ggtgcttatgctgttctgaagtcatagaagaggggacaggaccagcaatg
tcggtttctctcttaacttacagtctgcaaaagccactgctgaccgcaag
tctgcatccaaacccattggatttgaaggggatctgcgtggccagtcctc
tgatcttccagaaagactccattcccaggaggtggacctggcttcttctc
agggagactgtttgatggcgggcaatgagtccgaggaagccctcactgca
ctgatgtccaggaaaactgcaatctcgctgtttgaggggaaagccttggg
ccttgataaggccatcctgcacagcgtagactgttgctgtaagctcaccc
tgggtaccggtagatggtgtgggtgcagagacgtgacctgggtcagttct
tgcttgtgaagtgcagcattttctcagaaaatcatcaagccctgcttcca
cccttggcctgccagaggctgggaaccaagcaatgcagtaacaggtggcc
tcctggcccccattggcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30963905_30965030
seq2: B6Ng01-310M10.b_47_1163 (reverse)

seq1  TGATTAGCTCAAAATCCCAGGGAGAGAACAGTAGCCTGCAGCGGACCACT  50
      |||||||||| |||||||| ||||||| |||||| |||||||||| ||||
seq2  TGATTAGCTC-AAATCCCA-GGAGAGATCAGTAG-CTGCAGCGGAACACT  47

seq1  GCACTCAAACACAGGAGCAGAGCAAATGTGACTGCCCCAAATGTAGAAGG  100
      ||||||||||||| ||||||||| |||||||||||||| ||||||||| |
seq2  GCACTCAAACACA-GAGCAGAGC-AATGTGACTGCCCC-AATGTAGAA-G  93

seq1  CTGACATGCAGTCTGCTCTGGGAAGTTTCCTTTCTCAAATGCCCTCTAAA  150
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  CTGACATGCAGTCTGCTCTGGGAAG-TTCCTTTCTC-AATGCCCTCTAAA  141

seq1  ATAAATGGGCCACTGGGAATTGTCTTAATTTAGAGACAGGGCTTGTTCTT  200
      ||||||||||||||||||| |||| |||||||||||||||||||| ||||
seq2  ATAAATGGGCCACTGGGAAATGTC-TAATTTAGAGACAGGGCTTG-TCTT  189

seq1  GCTTGTTTTTAA-CCAGACTTGCATAAATTAAAGACAAGCAAATGGAACC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTTTAACCCAGACTTGCATAAATTAAAGACAAGCAAATGGAACC  239

seq1  ACC-TTATATCCACACATGCATTCATTCACTAGTCCTAAGAGAAGAAAAG  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATATCCACACATGCATTCATTCACTAGTCCTAAGAGAAGAAAAG  289

seq1  CCAACAGACCCTCTAAGATGCTGATTTCTAGTAGAATAAAGGACTCAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGACCCTCTAAGATGCTGATTTCTAGTAGAATAAAGGACTCAGAA  339

seq1  ACTCGTCCAAAACCAAAAGCAACATTTATGAAAGCAAAGGCAAGGGGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTCCAAAACCAAAAGCAACATTTATGAAAGCAAAGGCAAGGGGGAA  389

seq1  GTAGAAAGTTGTTTTTTCTGCCGGTAGAGAACAACCTTCCTTAGACCTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGTTGTTTTTTCTGCCGGTAGAGAACAACCTTCCTTAGACCTAA  439

seq1  ATCACACCCATATACAGACAAAAAGGGAAAGTCAGAGAATGAAAAGGCCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACCCATATACAGACAAAAAGGGAAAGTCAGAGAATGAAAAGGCCG  489

seq1  TGTACACCTACAGCCCAACACTAACATGTAGGAGGTAGAGGCAGGAGGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACCTACAGCCCAACACTAACATGTAGGAGGTAGAGGCAGGAGGAT  539

seq1  TAGGGCTTCAAGATCAGCCTTGGCAACATACCAAATCCAAGGTCAGCCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTCAAGATCAGCCTTGGCAACATACCAAATCCAAGGTCAGCCTG  589

seq1  GGCCACGAGAGAACCTGCCTCAAACAGAATGAGAGGAAGCAAGGAAGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACGAGAGAACCTGCCTCAAACAGAATGAGAGGAAGCAAGGAAGTAA  639

seq1  TGGAGAGAGGGGGTGCGGGAGGGGGGGAGGAAGGAAAGGAAGGACAGAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAGGGGGTGCGGGAGGGGGGGAGGAAGGAAAGGAAGGACAGAAG  689

seq1  GAGGGGTGAGTTAAGGCATTCAAAGAATATTCTTGCACTTGCAACTAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGAGTTAAGGCATTCAAAGAATATTCTTGCACTTGCAACTAACA  739

seq1  TTTTGGAGAGCATAAAAGTTCAGGCTTTGTTCAAGAAAACACTTATGTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGAGCATAAAAGTTCAGGCTTTGTTCAAGAAAACACTTATGTAA  789

seq1  AGAGTTAACGGGGAAATGTGATGTTTCCCAGAAGGCAAAGGAATCTTATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAACGGGGAAATGTGATGTTTCCCAGAAGGCAAAGGAATCTTATC  839

seq1  AATCACAGTTGTTCAGGTCAAAGTTCATCAGAAGCAGTATGCTTCCTCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTTGTTCAGGTCAAAGTTCATCAGAAGCAGTATGCTTCCTCCA  889

seq1  TGAGCCCCTCCACCTCGAGAAGCCTGTCACCATGAGAAGCCTATAACCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCTCCACCTCGAGAAGCCTGTCACCATGAGAAGCCTATAACCTC  939

seq1  AACAGCATGGTCTCTCTGCATCTGGTGAACAGTTCAGGGCAGGGTAGGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATGGTCTCTCTGCATCTGGTGAACAGTTCAGGGCAGGGTAGGAG  989

seq1  CTCAGGACCCCTCCCTCTCCCTGGGGAGCTGCTCCAGTGTAGACGGTATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCCCTCCCTCTCCCTGGGGAGCTGCTCCAGTGTAGACGGTATC  1039

seq1  GGGTGGAGGGGCTACTGTAACAGGGCATTTCATTGGCCACTGTGAGGCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGGGGCTACTGTAACAGGGCATTTCATTGGCCACTGTGAGGCAT  1089

seq1  GGAATATCAGCAAGTGGGTCAGGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  GGAATATCAGCAAGTGGGTCAGGAATTC  1117

seq1: chr14_30803267_30804329
seq2: B6Ng01-310M10.g_66_1136

seq1  GAATTCTTTGTTTGTTGGGCCCAGTAATCAGATGTCTGTCGGCTTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTGTTGGGCCCAGTAATCAGATGTCTGTCGGCTTAAACT  50

seq1  ATAGTTCGCAAATGCTAATCTGGTACCAGTAGCCCGTGGCGGAGACTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCGCAAATGCTAATCTGGTACCAGTAGCCCGTGGCGGAGACTAGG  100

seq1  GTTGGGACCTTGCTCAGCTTTGCTCTGTCCTAGAGACAAAAAGGAGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGACCTTGCTCAGCTTTGCTCTGTCCTAGAGACAAAAAGGAGGTAG  150

seq1  ATTGGATCTGAGGTAGAGGATTCTATAACAATCACTAGCCTGTGACTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCTGAGGTAGAGGATTCTATAACAATCACTAGCCTGTGACTCTC  200

seq1  ATTCACATACCCAGTAGAAAGTCAGCTTAGAGAGTCCGTCTCTGTCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATACCCAGTAGAAAGTCAGCTTAGAGAGTCCGTCTCTGTCAACA  250

seq1  TCTCAGGGTTTTTTTGTTTTGGTTTCTCTGTATAGCCCTGGCTATCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGTTTTTTTGTTTTGGTTTCTCTGTATAGCCCTGGCTATCCTGG  300

seq1  AACTCACTTTGTAAACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTTTGTAAACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT  350

seq1  CTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCTGGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCTGGCTTA  400

seq1  ACATCTCAGTTTTAAAGCGCACTGACTGACGGATAGTAAGGGTCTAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAGTTTTAAAGCGCACTGACTGACGGATAGTAAGGGTCTAGAAC  450

seq1  CTGCCCACATGGCCAGAACCTGCCTTGGCCTTGGCAGGCATCCTCACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACATGGCCAGAACCTGCCTTGGCCTTGGCAGGCATCCTCACTGT  500

seq1  ATGCCCAGCTCACGTGAGCATGGGTATAGGTTGTGTGTGCTGTGGTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGCTCACGTGAGCATGGGTATAGGTTGTGTGTGCTGTGGTGATC  550

seq1  GGTGCTTATGCTGTTCTGAAGTCATAGAAGAGGGGACAGGACCAGCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTATGCTGTTCTGAAGTCATAGAAGAGGGGACAGGACCAGCAATG  600

seq1  TCGGTTTCTCTCTTAACTTACAGTCTGCAAAAGCCACTGCTGACCGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTCTCTCTTAACTTACAGTCTGCAAAAGCCACTGCTGACCGCAAG  650

seq1  TCTGCATCCAAACCCATTGGATTTGAAGGGGATCTGCGTGGCCAGTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCCAAACCCATTGGATTTGAAGGGGATCTGCGTGGCCAGTCCTC  700

seq1  TGATCTTCCAGAAAGACTCCATTCCCAGGAGGTGGACCTGGCTTCTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCCAGAAAGACTCCATTCCCAGGAGGTGGACCTGGCTTCTTCTC  750

seq1  AGGGAGACTGTTTGATGGCGGGCAATGAGTCCGAGGAAGCCCTCACTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACTGTTTGATGGCGGGCAATGAGTCCGAGGAAGCCCTCACTGCA  800

seq1  CTGATGTCCAGGAAAACTGCAATCTCGCTGTTTGAGGGGAAAGCCTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCCAGGAAAACTGCAATCTCGCTGTTTGAGGGGAAAGCCTTGGG  850

seq1  CCTTGATAAGGCCATCCTGCACAGCGTAGACTGTTGCTGTAAGCTCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATAAGGCCATCCTGCACAGCGTAGACTGTTGCTGTAAGCTCACCC  900

seq1  TGGGTACCGGTAGATGGTGTGGGTGCAGAGACGTGACCTGGGTCAG-TCT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGGTACCGGTAGATGGTGTGGGTGCAGAGACGTGACCTGGGTCAGTTCT  950

seq1  TGCTTGTGAAGTGCAGCATTTTCTCAG-AAATCATCAAG-CCTGCTT-CA  996
      ||||||||||||||||||||||||||| ||||||||||| ||||||| ||
seq2  TGCTTGTGAAGTGCAGCATTTTCTCAGAAAATCATCAAGCCCTGCTTCCA  1000

seq1  CCCTTGGCTTGCCAGAGGCTGGGGACCCAGCAATGCAGT-ACAGGTGG-C  1044
      |||||||| |||||||||||||| ||| ||||||||||| |||||||| |
seq2  CCCTTGGCCTGCCAGAGGCTGGGAACCAAGCAATGCAGTAACAGGTGGCC  1050

seq1  TCCTGG-CCCCATT-GCAGTT  1063
      |||||| ||||||| ||||||
seq2  TCCTGGCCCCCATTGGCAGTT  1071