BAC Information

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BAC

Clone NameB6Ng01-310N09
Chromosome14 (Build37)14 (Build37)
Map Location 51,983,520 - 51,984,19552,530,123 - 52,530,638
singlet/doubletsingletsinglet
Overlap geneEG638695
Upstream geneOlfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238
Downstream geneVmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310N09.bB6Ng01-310N09.g
ACCGA102707GA102708
length692510
definitionB6Ng01-310N09.b B6Ng01-310N09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,983,520 - 51,984,195)(52,530,123 - 52,530,638)
sequence
gaattcactcagagagtatatttattattgagaaatatctcttacattca
ccgttccctagagatttggatgctaacaaaaatctcttatgcatgtcagg
gtcctaatcaatgcttcccatcgaaagcacttgtcttctaatgaagcaga
tgagaaagctctgaatttagaaagagatttttgccatagggtatttgcca
ggtcacacgagaggctccaggaaatgcacaacagaaactggtcaatttgg
ggagaactggatatcaaataggccttagcctttcccagtgacatcatcag
taatgccttccttggacaatctcctgtatctaggagagaactcgaatctt
ctgtgatgtcacttgtgttgtggttacaacaactgcttgtgggacattac
ttcagtgccttttgggatctcagtcaggcatgttttcctggctgctcagg
ctatttcacaagaggaatggcgatcaaggagagaccagaccaagacagaa
ggaagctggcatcctttcttgtaaaaacaaaagaaggaaattattctggg
gaaggcacagtgagtcctgggcagagttggagaaatttctggaacaggta
ggcttgagctgagccttcactgagaagatattaagagctcgaaccttgga
ctttcctttctgttttgttttgttttgttttgttttgttttt
cttaatctctggtctttcatgatttttctaccctcagatccaattccacc
gtcatatttccctaaagacccattaatcctgttttcaacagatggttcac
ttatttttgcctttccctctttgaagaactctcagtatatttctcccctg
atggtaagctcttttcttacagactcactctgtggagacaccttatggct
cggtcacttttactgtgtatggcacccccaaacccaaacgcccggcgata
ttcacctaccatgatgtaggcctcaactgtaagaccttcatttcttctcc
tgcctctttctgggaagagccatgggaggagaaagcccaatgtgtgtgtg
tttgggggagaggggcatagtcagtatggtcagaccgggagcccagtggt
ggcacatcagagagagattctcctctagtgtggtggcatcagagcaagag
ggtgggttctgacgagcggatgctttttccttctgattttgtggttgggt
ggggaatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51983520_51984195
seq2: B6Ng01-310N09.b_46_737

seq1  GAATTCACTCAGGTGGTATATTTCTTATTGAGAAATAGCTCTTATATTCA  50
      ||||||||||||   |||||||| ||||||||||||| |||||| |||||
seq2  GAATTCACTCAGAGAGTATATTTATTATTGAGAAATATCTCTTACATTCA  50

seq1  CTG-TCCCTAGAGATTTGGGTGCTAACAAAAATCTCTTATGCATGTCAGT  99
      | | ||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CCGTTCCCTAGAGATTTGGATGCTAACAAAAATCTCTTATGCATGTCAGG  100

seq1  GTCCTAATCAATGCTTCCCATCGAAAGCACTTGTCTTCTAATGAAGCAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAATCAATGCTTCCCATCGAAAGCACTTGTCTTCTAATGAAGCAGA  150

seq1  TGAGAAATCTCTGAATTTAGAAAGAGA-TTTTGCCATAGGGTATTTGCCA  198
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAGAAAGCTCTGAATTTAGAAAGAGATTTTTGCCATAGGGTATTTGCCA  200

seq1  GGTCACAGGAGAGGCTCCAGGAAATGCACAACAGAAACTTGTCAATTTGG  248
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTCACACGAGAGGCTCCAGGAAATGCACAACAGAAACTGGTCAATTTGG  250

seq1  GGAAAACTAGTTATCAAATAGGCCTTAGCCTTTCCCAGTGACATCATCAG  298
      ||| |||| | |||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACTGGATATCAAATAGGCCTTAGCCTTTCCCAGTGACATCATCAG  300

seq1  TAATGCCTTCCTTGGAAAATCTCCTGTATCTAGGAGAGAACTAGAATCTT  348
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  TAATGCCTTCCTTGGACAATCTCCTGTATCTAGGAGAGAACTCGAATCTT  350

seq1  CTGTGATGTCACTTGTGTTGTGGTTACAACAACTGCTTGTGGGATATTCC  398
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  CTGTGATGTCACTTGTGTTGTGGTTACAACAACTGCTTGTGGGACATTAC  400

seq1  TTCAGTGTCTTTTGGGTTCTCAATCAGGCATGTTTTCCTGCTTGCTCAGG  448
      ||||||| |||||||| ||||| |||||||||||||||||  ||||||||
seq2  TTCAGTGCCTTTTGGGATCTCAGTCAGGCATGTTTTCCTGGCTGCTCAGG  450

seq1  CAATTTCACAGGGAGAATGGCGATCAAGGAGAGACCAGACCAAGGCAGAA  498
      | |||||||| |  |||||||||||||||||||||||||||||| |||||
seq2  CTATTTCACAAGAGGAATGGCGATCAAGGAGAGACCAGACCAAGACAGAA  500

seq1  GGAATCTGGCATCCTTTCTTGTAAAAACAGAAGAATGAAATCATTCTGTG  548
      |||| |||||||||||||||||||||||| ||||| ||||| |||||| |
seq2  GGAAGCTGGCATCCTTTCTTGTAAAAACAAAAGAAGGAAATTATTCTGGG  550

seq1  GAAGGCACAGTGAGTCCTGGGCAGAGTTGGGGAAA-TTCTGGAACAGGTA  597
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  GAAGGCACAGTGAGTCCTGGGCAGAGTTGGAGAAATTTCTGGAACAGGTA  600

seq1  GGCTTGAGCTGAGCATTCCCTGAGTAGATATTAAGAGCTGGAGCCTTGGA  647
      |||||||||||||| ||| ||||| |||||||||||||| || |||||||
seq2  GGCTTGAGCTGAGCCTTCACTGAGAAGATATTAAGAGCTCGAACCTTGGA  650

seq1  CTTTCTTTT---TTTTGTTTTGTTTTGTTTTT----------  676
      ||||| |||   |||||||||||||||||||           
seq2  CTTTCCTTTCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTT  692

seq1: chr14_52530123_52530638
seq2: B6Ng01-310N09.g_71_586 (reverse)

seq1  CACATTCCCCACCCAACCACAAAATCAGAAGGAAAAAGCATCCGCTCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCCCCACCCAACCACAAAATCAGAAGGAAAAAGCATCCGCTCGTC  50

seq1  AGAACCCACCCTCTTGCTCTGATGCCACCACACTAGAGGAGAATCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACCCTCTTGCTCTGATGCCACCACACTAGAGGAGAATCTCTCT  100

seq1  CTGATGTGCCACCACTGGGCTCCCGGTCTGACCATACTGACTATGCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGCCACCACTGGGCTCCCGGTCTGACCATACTGACTATGCCCCT  150

seq1  CTCCCCCAAACACACACACATTGGGCTTTCTCCTCCCATGGCTCTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAAACACACACACATTGGGCTTTCTCCTCCCATGGCTCTTCCCA  200

seq1  GAAAGAGGCAGGAGAAGAAATGAAGGTCTTACAGTTGAGGCCTACATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGCAGGAGAAGAAATGAAGGTCTTACAGTTGAGGCCTACATCAT  250

seq1  GGTAGGTGAATATCGCCGGGCGTTTGGGTTTGGGGGTGCCATACACAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTGAATATCGCCGGGCGTTTGGGTTTGGGGGTGCCATACACAGTA  300

seq1  AAAGTGACCGAGCCATAAGGTGTCTCCACAGAGTGAGTCTGTAAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACCGAGCCATAAGGTGTCTCCACAGAGTGAGTCTGTAAGAAAAG  350

seq1  AGCTTACCATCAGGGGAGAAATATACTGAGAGTTCTTCAAAGAGGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACCATCAGGGGAGAAATATACTGAGAGTTCTTCAAAGAGGGAAAG  400

seq1  GCAAAAATAAGTGAACCATCTGTTGAAAACAGGATTAATGGGTCTTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATAAGTGAACCATCTGTTGAAAACAGGATTAATGGGTCTTTAGG  450

seq1  GAAATATGACGGTGGAATTGGATCTGAGGGTAGAAAAATCATGAAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGACGGTGGAATTGGATCTGAGGGTAGAAAAATCATGAAAGACC  500

seq1  AGAGATTAAGGAATTC  516
      ||||||||||||||||
seq2  AGAGATTAAGGAATTC  516