BAC Information

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BAC

Clone NameB6Ng01-311A19
Chromosome14 (Build37)
Map Location 112,068,725 - 112,069,918
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311A19.bB6Ng01-311A19.g
ACCGA102863GA102864
length1,1811,147
definitionB6Ng01-311A19.b B6Ng01-311A19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtcactacaaaacattcggtagattgaagatgtattatttaac
gaccaaaatcacattatgtaatcttacaaaaaatttgagctgtgaaatct
atttttacagaagttaatttttcatgaaagtagcatagaacaaaccaaac
tttcttgtttcattcatttgtctgcaaatttcataacttcactttttttt
acaaaaatatataaacagggtaatactccattttgtgtttgtacaacaat
atctttatcctttctctagttacgggccatcttgaatctgcaggggagca
agtcggcaaggaaagaaaggagtaaaagctacagtcaggatgtgaaaaat
gagagaagaatacttttttaaaaattcaatatgtaataaaatttagcact
tttaatgataaatttaatcattatattcccaagaatgtgacattttaaat
tttattgtttataaaattatgtgatcatcatatagtttttcatgagaaag
caaaattaatctttatcaatcacctagagaagtgttttcacaaatacaaa
tgtgcaatccagggacccataatagggaagtttgggtcatgtgaaaattt
cttgctttattctttagtcatgtcccttattttcaatcttgatattattt
cctcatttatttttaattgcatcttttatttctgagattattatgagtat
gtaaaggcctagttcagaggctgtgagatgcactagcgatacaaaattgt
gcattactctttgggaaaacaccatcactttgagagaataaagagctgtt
gggagtatcattgaatgctattagaatggattattctaattagaagagtt
cattacagaatatcaaaacagaatctcagatacaaataattctgaaattt
tcgtgataaatctgggttttagagaaatttcttttttgttgaaagaaaaa
gatcgtggcaatacacagagatgatacctaattggactggatttctaaca
tgacaagaggtggagttaggagtagagccgtgtttttcatgggatagtca
cttgttctagcaagagaaacataaaaccaaactagctgttggcgaacagt
tgccgttcaatgaatacacaccatgttctgaaccggcttgacaagccgaa
ttgctgttctaggctggcttgagagaggaga
gaattctttgttcagctctgagccccattttttaatggggttatctgatt
ttctggagtccaccttcttcagttctttatatataatagatattagtccc
ctaactgatttaggataggtaaagatcctttcccaatctgttgatggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tgaagtcccatttgtcagttctcgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctatgcccatatctttgaggcttttccccac
tttttcctctataatttcactgtctctggttttatgtggagttccttgat
gcacttatgtgcaccttagtactaaaagataggaatggatcgaattcttc
tacatgttaaccgccagttgtgccagcaccatttgtttaaaatgctgttt
tttttccactggatggttttagctcccttgtcaaagatcaagtgaccata
ggtgtgtgggttcatttctgggtcttcaattctattccactggtctaatt
gtctgtcgctttaccagtaccatgcagtttttatcacaattgctctgtag
tacagctttagttcaggcatggttattccaccagtggttcttttatcctt
gagaagagtttttgctatccgaggttttttgttattccagatgaattttc
agattgccctttctaattcgttgaagaattgagttggaattttgatgggg
attgcattgaatctatagattacttttgcctagatagccatttttactat
atcgatcctgccaatccatgagcatgggggatatttccagcttctgagat
cttctttatttcctttcttcagagacttgaagttcttttcatacagatct
ttcacttccttagagtcaccacaaggtattttgtatattgtgactattga
gaaggtgtgtatcctatttctttctcagtctgttattcttgtgtagataa
gcatggactgtttgagttatttatatcaggccactcacggaagctgttta
tcaggtttagagtctctgttgaatattgacgtcctaatttaccatctatt
cactcgcaaggaattgactcttcttccaagtgtatcccctgattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112068725_112069918
seq2: B6Ng01-311A19.b_46_1226

seq1  GAATTCTGTCACTACAAAACATTCGGTAGATTGAAGATGTATTATTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCACTACAAAACATTCGGTAGATTGAAGATGTATTATTTAAC  50

seq1  GACCAAAATCACATTATGTAATCTTACAAAAAATTTGAGCTGTGAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAATCACATTATGTAATCTTACAAAAAATTTGAGCTGTGAAATCT  100

seq1  ATTTTTACAGAAGTTAATTTTTCATGAAAGTAGCATAGAACAAACCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAGAAGTTAATTTTTCATGAAAGTAGCATAGAACAAACCAAAC  150

seq1  TTTCTTGTTTCATTCATTTGTCTGCAAATTTCATAACTTCACTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTCATTCATTTGTCTGCAAATTTCATAACTTCACTTTTTTTT  200

seq1  ACAAAAATATATAAACAGGGTAATACTCCATTTTGTGTTTGTACAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATATAAACAGGGTAATACTCCATTTTGTGTTTGTACAACAAT  250

seq1  ATCTTTATCCTTTCTCTAGTTACGGGCCATCTTGAATCTGCAGGGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCCTTTCTCTAGTTACGGGCCATCTTGAATCTGCAGGGGAGCA  300

seq1  AGTCGGCAAGGAAAGAAAGGAGTAAAAGCTACAGTCAGGATGTGAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGCAAGGAAAGAAAGGAGTAAAAGCTACAGTCAGGATGTGAAAAAT  350

seq1  GAGAGAAGAATACTTTTTTAAAAATTCAATATGTAATAAAATTTAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGAATACTTTTTTAAAAATTCAATATGTAATAAAATTTAGCACT  400

seq1  TTTAATGATAAATTTAATCATTATATTCCCAAGAATGTGACATTTTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGATAAATTTAATCATTATATTCCCAAGAATGTGACATTTTAAAT  450

seq1  TTTATTGTTTATAAAATTATGTGATCATCATATAGTTTTTCATGAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTTATAAAATTATGTGATCATCATATAGTTTTTCATGAGAAAG  500

seq1  CAAAATTAATCTTTATCAATCACCTAGAGAAGTGTTTTCACAAATACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAATCTTTATCAATCACCTAGAGAAGTGTTTTCACAAATACAAA  550

seq1  TGTGCAATCCAGGGACCCATAATAGGGAAGTTTGGGTCATGTGAAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATCCAGGGACCCATAATAGGGAAGTTTGGGTCATGTGAAAATTT  600

seq1  CTTGCTTTATTCTTTAGTCATGTCCCTTATTTTCAATCTTGATATTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTATTCTTTAGTCATGTCCCTTATTTTCAATCTTGATATTATTT  650

seq1  CCTCATTTATTTTTAATTGCATCTTTTATTTCTGAGATTATTATGAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTATTTTTAATTGCATCTTTTATTTCTGAGATTATTATGAGTAT  700

seq1  GTAAAGGCCTAGTTCAGAGGCTGTGAGATGCACTAGCGATACAAAATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCCTAGTTCAGAGGCTGTGAGATGCACTAGCGATACAAAATTGT  750

seq1  GCATTACTCTTTGGGAAAACACCATCACTTTGAGAGAATAAAGAGCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTCTTTGGGAAAACACCATCACTTTGAGAGAATAAAGAGCTGTT  800

seq1  GGGAGTATCATTGAATGCTATTAGAATGGATTATTCTAATTAGAAGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTATCATTGAATGCTATTAGAATGGATTATTCTAATTAGAAGAGTT  850

seq1  CATTACAGAATATCAAAACAGAATCTCAGATACAAAATAATTCTGAAATT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTACAGAATATCAAAACAGAATCTCAGATAC-AAATAATTCTGAAATT  899

seq1  TTCGTGATAAATCTGGGTTTTAGAGAAATTTCTTTTTTTGTTGAAAGAAA  950
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TTCGTGATAAATCTGGGTTTTAGAGAAATTTC-TTTTTTGTTGAAAG-AA  947

seq1  AAAGATCGTGGGCAAATACAACAGAAGATGATACCTAATTGGACTGGATT  1000
      |||||||||||   ||||| |||| |||||||||||||||||||||||||
seq2  AAAGATCGTGG--CAATAC-ACAG-AGATGATACCTAATTGGACTGGATT  993

seq1  TCTAAACATGACAAGAGGT-GAGTTAGGAGTAAGAAGCCGTGTTTTCCAT  1049
      ||| ||||||||||||||| ||||||||||||   ||||||||||| |||
seq2  TCT-AACATGACAAGAGGTGGAGTTAGGAGTA--GAGCCGTGTTTTTCAT  1040

seq1  GGGAATAGTCAC-TGTTCTAGCAAAGAGAAACATAAAAACCCAAACTAGC  1098
      ||| |||||||| ||||||||| |||||||||||||||  ||||||||||
seq2  GGG-ATAGTCACTTGTTCTAGC-AAGAGAAACATAAAA--CCAAACTAGC  1086

seq1  TGTTTGGCAGAACAGGTTGCCGTCCAGTG-ATACACA-CATG-TCTGAGC  1145
      || ||||| ||||| |||||||| || || ||||||| |||| ||||| |
seq2  TG-TTGGC-GAACA-GTTGCCGTTCAATGAATACACACCATGTTCTGAAC  1133

seq1  AGCGCTAGAACAAGCCAGATGGCCTTTGTTCTA-GCTGG---GTCTGAGG  1191
       | ||| | |||||||  || ||   ||||||| |||||   |   ||||
seq2  CG-GCTTG-ACAAGCCGAATTGC---TGTTCTAGGCTGGCTTGAGAGAGG  1178

seq1  AGA  1194
      |||
seq2  AGA  1181