BAC Information

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BAC

Clone NameB6Ng01-311C01
Chromosome14 (Build37)
Map Location 85,187,408 - 85,188,595
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311C01.bB6Ng01-311C01.g
ACCGA102922GA102923
length1,1991,145
definitionB6Ng01-311C01.b B6Ng01-311C01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattatgaagtatagaaagtttgagtaagactctatgagaagttt
aaacttaaaaatcatttcaaactttgctgtagtaagtcccgaaatatttc
agatatatgaaaaatagaaaatagaacatccatgcatagtttaaataaag
tctaatataatgatctaatttaaatttaataaaccatttattgcaggtta
attaaatgccacttgatgattaaagcatatttatttagattaacagcttt
tagattattttatcacactttcatggctaatttaaacatattgtcaagta
ttaatatttcattttatacctgcttttgaatgacacaattagtttaaatt
ataggattcaaagtttttcctattttgaactgtttccttaatctttggaa
tttcttgcattattgttaaataaatggaaaacatttaatatgaggcaaat
gttaagaagacagtaaaaaggatcaacatacaattaaattaaggtgaaat
agaagtaagtaggttaattagacaaataatttttcactgaatcccaactt
ataattaatatttttaattataaaggacccctcttaaaccttatatacaa
agttattttaaaataagtaataatagataacatttattaaacacatttgg
aatatgcaatttaaaaaatgtattgctttaagaatcatttagtttctaga
ataataccaatgtagatattactctgggtcttttcctgcaaaagatgttt
gaacttttcaaagaaaattaattaggagttgagagtctcaatattgtttg
ctactacattttaaaatttttaaactagtatctcctaaattatcattaga
atgatcttaaatgaagaaagtgttaatagcaaatctataaattgtagtta
tatatatatttatagattaatacaatttacatatatggaggacaaaatat
gaatgcatgagcacatagaaaaataattgaatcatgttaattagcatatt
tatcatttaaaatattcatcaatattttgtggtttagtacttgaaattta
cttatttgttaccagctttaatattataatacattattaccggacctatt
aagaagaactataaaagttatttataaaggaaaaatcctgccatagcctt
agtagattgagtcctgtgacctgatgcacacagagggacactatatgga

gaattccagatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
tagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccatttgggttgatttcaccctgagtttgatatt
tctgcccgtctactcctcttgggtgaatttgcttccttttttttctaggg
cttttagatgtgttgtcaagctgctagtatgtgctgtctcccggtttctt
cttggagcactcagcgctattgagttccctctagaatgctttccatgtgt
ccataggtgggtacgttgtgcttcatttcaattaactataaaggtctgag
ttcctgcgttaattctttctgaaccaaggatctattgagaagtgctattc
cagttcccgagtgaagtctgctttctaatatcgtagtcatggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85187408_85188595
seq2: B6Ng01-311C01.b_46_1244

seq1  GAATTCATTATGAAGTATAGAAAGTTTGAGTAAGACTCTATGAGAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGAAGTATAGAAAGTTTGAGTAAGACTCTATGAGAAGTTT  50

seq1  AAACTTAAAAATCATTTCAAACTTTGCTGTAGTAAGTCCCGAAATATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAAAATCATTTCAAACTTTGCTGTAGTAAGTCCCGAAATATTTC  100

seq1  AGATATATGAAAAATAGAAAATAGAACATCCATGCATAGTTTAAATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATGAAAAATAGAAAATAGAACATCCATGCATAGTTTAAATAAAG  150

seq1  TCTAATATAATGATCTAATTTAAATTTAATAAACCATTTATTGCAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATAATGATCTAATTTAAATTTAATAAACCATTTATTGCAGGTTA  200

seq1  ATTAAATGCCACTTGATGATTAAAGCATATTTATTTAGATTAACAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGCCACTTGATGATTAAAGCATATTTATTTAGATTAACAGCTTT  250

seq1  TAGATTATTTTATCACACTTTCATGGCTAATTTAAACATATTGTCAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTATTTTATCACACTTTCATGGCTAATTTAAACATATTGTCAAGTA  300

seq1  TTAATATTTCATTTTATACCTGCTTTTGAATGACACAATTAGTTTAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTCATTTTATACCTGCTTTTGAATGACACAATTAGTTTAAATT  350

seq1  ATAGGATTCAAAGTTTTTCCTATTTTGAACTGTTTCCTTAATCTTTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTCAAAGTTTTTCCTATTTTGAACTGTTTCCTTAATCTTTGGAA  400

seq1  TTTCTTGCATTATTGTTAAATAAATGGAAAACATTTAATATGAGGCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCATTATTGTTAAATAAATGGAAAACATTTAATATGAGGCAAAT  450

seq1  GTTAAGAAGACAGTAAAAAGGATCAACATACAATTAAATTAAGGTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAGACAGTAAAAAGGATCAACATACAATTAAATTAAGGTGAAAT  500

seq1  AGAAGTAAGTAGGTTAATTAGACAAATAATTTTTCACTGAATCCCAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGTAGGTTAATTAGACAAATAATTTTTCACTGAATCCCAACTT  550

seq1  ATAATTAATATTTTTAATTATAAAGGACCCCTCTTAAACCTTATATACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAATATTTTTAATTATAAAGGACCCCTCTTAAACCTTATATACAA  600

seq1  AGTTATTTTAAAATAAGTAATAATAGATAACATTTATTAAACACATTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTAAAATAAGTAATAATAGATAACATTTATTAAACACATTTGG  650

seq1  AATATGCAATTTAAAAAATGTATTGCTTTAAGAATCATTTAGTTTCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAATTTAAAAAATGTATTGCTTTAAGAATCATTTAGTTTCTAGA  700

seq1  ATAATACCAATGTAGATATTACTCTGGGTCTTTTCCTGCAAAAGATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACCAATGTAGATATTACTCTGGGTCTTTTCCTGCAAAAGATGTTT  750

seq1  GAACTTTTCAAAGAAAATTAATTAGGAGTTGAGAGTCTCAATATTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTCAAAGAAAATTAATTAGGAGTTGAGAGTCTCAATATTGTTTG  800

seq1  CTACTACATTTTAAAATTTTTAAACTAGTATCTCCTAAATTATCATTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACATTTTAAAATTTTTAAACTAGTATCTCCTAAATTATCATTAGA  850

seq1  ATGATCTTAAATGAAGAAAGTGTTAATAGCAAATCTATAAATTGTAGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTAAATGAAGAAAGTGTTAATAGCAAATCTATAAATTGTAGTTA  900

seq1  TATATATATTTATAGATTAATACAATTTACATATATGGAGGACAAAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATTTATAGATTAATACAATTTACATATATGGAGGACAAAATAT  950

seq1  GAATGCATGAGCACATAGAAAAATAATTGAATCATGTTAATTAGCATATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATGAGCACATAGAAAAATAATTGAATCATGTTAATTAGCATATT  1000

seq1  TATCATTTAAAATATTCATCAATA-TTTGTGGTTTTAGTACTTGAAATTT  1049
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  TATCATTTAAAATATTCATCAATATTTTGTGG-TTTAGTACTTGAAATTT  1049

seq1  AC-TATT--GTACCAGTTTTAAATATATAATACATTATTACAGACTATAT  1096
      || ||||   |||||| |||||   |||||||||||||||| |    |||
seq2  ACTTATTTGTTACCAGCTTTAATATTATAATACATTATTACCGGACCTAT  1099

seq1  AAAGAAG-ACTATAAAAGT--ATTATAAAAGAAAAAATCTG-CATAGC--  1140
       |||||| |||||||||||   ||||||| ||||||  ||| ||||||  
seq2  TAAGAAGAACTATAAAAGTTATTTATAAAGGAAAAATCCTGCCATAGCCT  1149

seq1  TAGTAGTATTGATGTCTGTGGCCTGGTTGCCACAGAGGGAC---ATATGG  1187
      |||||| |||||   ||||| |||| |   |||||||||||   ||||||
seq2  TAGTAG-ATTGAGTCCTGTGACCTGATGCACACAGAGGGACACTATATGG  1198

seq1  A  1188
      |
seq2  A  1199


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