BAC Information

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BAC

Clone NameB6Ng01-311J16
Chromosome14 (Build37)
Map Location 62,014,437 - 62,067,033
singlet/doubletdoublet
Overlap geneKpna3
Upstream genePpia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl
Downstream geneLOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7, Rnaseh2b, Gucy1b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311J16.bB6Ng01-311J16.g
ACCGA103282GA103283
length1,105971
definitionB6Ng01-311J16.b B6Ng01-311J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,065,944 - 62,067,033)(62,014,437 - 62,015,316)
sequence
gaattcttcctagttcttccctcatgactcagggctcttgctttgaacct
gagtgactgtactgtccacgtacctaggatgacctaatgcggggctttcc
tgatatctacccgcttgactctctgcccactagcatgcccacagcctctg
gtcacatgcccataatagcacttcacacactgaggcaaagctatttgttt
accaaactccttggcctggaacccccttgctggggcagggtcaggttccc
aggtagctgccgcacagtgacactgtctgggttctacttgatggccgcac
acccagcacttggcattttatgcttattcattcagacagacatgggcatg
tgtccacagctgagtgctgaagtgccgatctattttagccttccaagaca
gccaaggacagaaattgcattcctccttagactggaggatgagttttagt
tagcacaagggcaggaaaggatcccctttctggtatagtttcagcccatt
ctctttctttttgggcattggtggggttgttcggtttgatttgattgtgg
gttcattgaagccaaagtagccagtgtacaagtactttcttcttcttctt
cttctttttctcattaaggatggctgtgagcctccatgtggttgctggga
attgaactcattacctccggaagagcagtcagtgctcttaactgctgagc
catctcaccagccccaagtacttatcttcaatttagtagtgctctgtgtc
ggtgtgtcggtgtgtgtttgtgtgtgtgtacatgtggaggccagatgttt
gacatatggtgccttcctaaattacttttatttcgagactgattctctta
ctgaatttgcagcttgtcagttcctctaaactagcaggccactgagcacc
agagatccctcttgttctttacttcttctcccagcttctgggattgtagg
tacatacatcactgttgccaggcatcatcttttttttctttccttaatgt
gggttttgagaatcaaattcgggttctcatgccttattgcccctgtgggc
tctcgtgcccattgtagattggctctgatataggttcctctatggcccaa
agaga
gaattcactgagtggaacaggctaggcttaaacttgtagagctcttcctg
ctccttaaagagtaggattataggaatataccatcaaatctagcttactc
attaatttctaacttaatttcattgacattaaagaaaatggccttatagc
actcaagttaattctgtaggcttctctctgtacacccacctccccaaccc
ctgaataagcattttcccaaggaatcatgtaatcttcttatatatgtagc
taagaggttgtaactgggcactctggagaatgaggcaagcagatctctaa
taatttctaggaaggaaataggcatctaataataataatttaaaatttaa
aaaatcagaatacaacacaggaaaagagagaccttttgtattaggaaaat
tctctgcatgtttttgttgaaaatattttacttttattaacctaggcttg
tttcttcttcctctcttcctattatttgtagatttagtctgtttataatg
cctcagatttcctggatgttttgagatttaacattttcttcaactaaatt
atccaattcttctatcttcaaagcctgagatcatctcttccacttcttat
aatctgttagtatgacttacctctgaggtttttttgatttcctaaacttt
gatttgcagttttggttttctttattgtttctactttcatgttttcaatt
attttcattaatttattccactttttgtattttcagacttcattgaagaa
tttactactatcaactttaaagtccttgaacatgtctgtaaatgctattc
tgtttgtttgtttgtttgtttgtttgtttttcgagacagggtttctctgt
atagccctggctgtcctggaactcactttgtagaccaggctgggctcaga
actcagaaatccgcctgctctgcctccctagtgctgggattaaaggcgtg
caccaccactgcccggcgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_62065944_62067033
seq2: B6Ng01-311J16.b_46_1150 (reverse)

seq1  TCTCTTT-GGCCAT-GAGG-ACCTATATCAGA--CAATCTACAA-GGGCA  44
      ||||||| |||||| |||| ||||||||||||  |||||||||| |||||
seq2  TCTCTTTGGGCCATAGAGGAACCTATATCAGAGCCAATCTACAATGGGCA  50

seq1  CGGAGAG-CCACAGGG--CATAA-GCATGAGGACCCGAATTTGATCCTCA  90
      | ||||| ||||||||   |||| ||||||| ||||||||||||| ||||
seq2  C-GAGAGCCCACAGGGGCAATAAGGCATGAGAACCCGAATTTGATTCTCA  99

seq1  AAACCCACATTAA-GAAAGAAAAAAAAGATGATGCCTGGC-ACAGTGATG  138
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  AAACCCACATTAAGGAAAGAAAAAAAAGATGATGCCTGGCAACAGTGATG  149

seq1  TATGTACCTACAATCCCAG-AGCTGGGGAGAGAAGTAAAG-ACAAGA-GG  185
      ||||||||||||||||||| |||||||   |||||||||| |||||| ||
seq2  TATGTACCTACAATCCCAGAAGCTGGGAGAAGAAGTAAAGAACAAGAGGG  199

seq1  ATCTCTGGTGCTCAGTGGCCTGCTAGTTTAGAGGAACTGACAAGCTGCAA  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGTGCTCAGTGGCCTGCTAGTTTAGAGGAACTGACAAGCTGCAA  249

seq1  ATTCAGTAAGAGAATCAGTCTCGAAATAAAAGTAATTTAGGAAGGCACCA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAAGAGAATCAGTCTCGAAATAAAAGTAATTTAGGAAGGCACCA  299

seq1  TATGTC-AACATCTGGCCTCCACATGTACACACACACAAACACACACCGA  334
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAACATCTGGCCTCCACATGTACACACACACAAACACACACCGA  349

seq1  CACACCGACACAGAGCACTACTAAATTGAAGATAAGTACTTGGGGCTGGT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCGACACAGAGCACTACTAAATTGAAGATAAGTACTTGGGGCTGGT  399

seq1  GAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCGGAGGTAATGAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCGGAGGTAATGAG  449

seq1  TTCAATTCCCAGCAACCACATGGAGGCTCACAGCCATCCTTAATGAGAAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAGCAACCACATGGAGGCTCACAGCCATCCTTAATGAGAAA  499

seq1  AAGAAGAAGAAGAAGAAGAAAGTACTTGTACACTGGCTACTTTGGCTTCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAAGTACTTGTACACTGGCTACTTTGGCTTCA  549

seq1  ATGAACCCACAATCAAATCAAACCGAACAACCCCACCAATGCCCAAAAAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCCACAATCAAATCAAACCGAACAACCCCACCAATGCCCAAAAAG  599

seq1  AAAGAGAATGGGCTGAAACTATACCAGAAAGGGGATCCTTTCCTGCCCTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATGGGCTGAAACTATACCAGAAAGGGGATCCTTTCCTGCCCTT  649

seq1  GTGCTAACTAAAACTCATCCTCCAGTCTAAGGAGGAATGCAATTTCTGTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAACTAAAACTCATCCTCCAGTCTAAGGAGGAATGCAATTTCTGTC  699

seq1  CTTGGCTGTCTTGGAAGGCTAAAATAGATCGGCACTTCAGCACTCAGCTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGTCTTGGAAGGCTAAAATAGATCGGCACTTCAGCACTCAGCTG  749

seq1  TGGACACATGCCCATGTCTGTCTGAATGAATAAGCATAAAATGCCAAGTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACATGCCCATGTCTGTCTGAATGAATAAGCATAAAATGCCAAGTG  799

seq1  CTGGGTGTGCGGCCATCAAGTAGAACCCAGACAGTGTCACTGTGCGGCAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTGCGGCCATCAAGTAGAACCCAGACAGTGTCACTGTGCGGCAG  849

seq1  CTACCTGGGAACCTGACCCTGCCCCAGCAAGGGGGTTCCAGGCCAAGGAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGGGAACCTGACCCTGCCCCAGCAAGGGGGTTCCAGGCCAAGGAG  899

seq1  TTTGGTAAACAAATAGCTTTGCCTCAGTGTGTGAAGTGCTATTATGGGCA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAACAAATAGCTTTGCCTCAGTGTGTGAAGTGCTATTATGGGCA  949

seq1  TGTGACCAGAGGCTGTGGGCATGCTAGTGGGCAGAGAGTCAAGCGGGTAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAGAGGCTGTGGGCATGCTAGTGGGCAGAGAGTCAAGCGGGTAG  999

seq1  ATATCAGGAAAGCCCCGCATTAGGTCATCCTAGGTACGTGGACAGTACAG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGAAAGCCCCGCATTAGGTCATCCTAGGTACGTGGACAGTACAG  1049

seq1  TCACTCAGGTTCAAAGCAAGAGCCCTGAGTCATGAGGGAAGAACTAGGAA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGGTTCAAAGCAAGAGCCCTGAGTCATGAGGGAAGAACTAGGAA  1099

seq1  GAATTC  1090
      ||||||
seq2  GAATTC  1105

seq1: chr14_62014437_62015316
seq2: B6Ng01-311J16.g_65_944

seq1  GAATTCACTGAGTGGAACAGGCTAGGCTTAAACTTGTAGAGCTCTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGTGGAACAGGCTAGGCTTAAACTTGTAGAGCTCTTCCTG  50

seq1  CTCCTTAAAGAGTAGGATTATAGGAATATACCATCAAATCTAGCTTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAAGAGTAGGATTATAGGAATATACCATCAAATCTAGCTTACTC  100

seq1  ATTAATTTCTAACTTAATTTCATTGACATTAAAGAAAATGGCCTTATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCTAACTTAATTTCATTGACATTAAAGAAAATGGCCTTATAGC  150

seq1  ACTCAAGTTAATTCTGTAGGCTTCTCTCTGTACACCCACCTCCCCAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTTAATTCTGTAGGCTTCTCTCTGTACACCCACCTCCCCAACCC  200

seq1  CTGAATAAGCATTTTCCCAAGGAATCATGTAATCTTCTTATATATGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAAGCATTTTCCCAAGGAATCATGTAATCTTCTTATATATGTAGC  250

seq1  TAAGAGGTTGTAACTGGGCACTCTGGAGAATGAGGCAAGCAGATCTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTTGTAACTGGGCACTCTGGAGAATGAGGCAAGCAGATCTCTAA  300

seq1  TAATTTCTAGGAAGGAAATAGGCATCTAATAATAATAATTTAAAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTAGGAAGGAAATAGGCATCTAATAATAATAATTTAAAATTTAA  350

seq1  AAAATCAGAATACAACACAGGAAAAGAGAGACCTTTTGTATTAGGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAATACAACACAGGAAAAGAGAGACCTTTTGTATTAGGAAAAT  400

seq1  TCTCTGCATGTTTTTGTTGAAAATATTTTACTTTTATTAACCTAGGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATGTTTTTGTTGAAAATATTTTACTTTTATTAACCTAGGCTTG  450

seq1  TTTCTTCTTCCTCTCTTCCTATTATTTGTAGATTTAGTCTGTTTATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTCCTCTCTTCCTATTATTTGTAGATTTAGTCTGTTTATAATG  500

seq1  CCTCAGATTTCCTGGATGTTTTGAGATTTAACATTTTCTTCAACTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATTTCCTGGATGTTTTGAGATTTAACATTTTCTTCAACTAAATT  550

seq1  ATCCAATTCTTCTATCTTCAAAGCCTGAGATCATCTCTTCCACTTCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTCTTCTATCTTCAAAGCCTGAGATCATCTCTTCCACTTCTTAT  600

seq1  AATCTGTTAGTATGACTTACCTCTGAGGTTTTTTTGATTTCCTAAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTAGTATGACTTACCTCTGAGGTTTTTTTGATTTCCTAAACTTT  650

seq1  GATTTGCAGTTTTGGTTTTCTTTATTGTTTCTACTTTCATGTTTTCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCAGTTTTGGTTTTCTTTATTGTTTCTACTTTCATGTTTTCAATT  700

seq1  ATTTTCATTAATTTATTCCACTTTTTGTATTTTCAGACTTCATTGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTAATTTATTCCACTTTTTGTATTTTCAGACTTCATTGAAGAA  750

seq1  TTTACTACTATCAACTTTAAAGTCCTTGAACATGTCTGTAAATGCTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACTATCAACTTTAAAGTCCTTGAACATGTCTGTAAATGCTATTC  800

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGT  850

seq1  ATAGCCCTGGCTGTCCTGGAACTCACTTTG  880
      ||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGCTGTCCTGGAACTCACTTTG  880