BAC Information

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BAC

Clone NameB6Ng01-313F19
Chromosome14 (Build37)
Map Location 42,703,914 - 42,705,022
singlet/doubletsinglet
Overlap geneLOC666233
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152
Downstream geneEG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313F19.bB6Ng01-313F19.g
ACCGA104598GA104599
length1,2151,096
definitionB6Ng01-313F19.b B6Ng01-313F19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
ttcttgaagtattagccagagcaattcgacaacaaaaggagatcgagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgatgtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaaaaacacccttctcaatagtcacaaataatataaactatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggtggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatctttgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactgggttgttaatgtgtagaagaatgcgaatcgatccatacttat
ctcttgtactaagtcaaatctaagtggatcaggacttcacaataaaacca
gagacactgaaactaatacaggagaaagtggggaaaccgcccttgaagat
tgggcacagggaaaactcctgaacggacagcaatggcctgtgtctgtaga
atcgaatgcaatgacctatgaactccaagtttctggcaggcgaaaagaca
cacccgctccagtag
gaattccagaacaaatttaaaagcatggtgttgtgctgggcatggtggtg
catgcctgtaatctcagcactcaggaggcagatgcaaggggatttctgca
ttcagttcaaggtaatcctggtctacaaagtgagctccaggacagccaga
gttatacagagaaaccctgtctcaaaaaaacaaagaaagaaagaaacacc
tggtgtagtagcataagaatactttaatctctgcacttgaatggcagcac
ttgcaggcagatatctgtgagattgaggccaatatggtcccatgagtccc
aaaacaggcagggcttgatagagagaccctatctcaaagaatgaataaat
ttaaaaataaaattctatacacacaatgaaaatgtgatatagttatgcaa
ggataacacaaaggatgtaaatcaaataaatgtaactcagcacaaaaata
gtctcaaaaattaatagttgaattgtcatttcagtacctgcagaaaatgc
attggacatgtccatcatcacctcatgataaaattcctgaagaaactagg
aataagagaaacatgcctcacctgaataaatcttctattcaacaaacata
gtcaacattatagtaatgggagagagaaaaagtctgtataaaataagaaa
caggaccagggtatacattctctctaccttattcaacataatacccgaga
ctttgaagcaatgagcaagtataaagaaacaagatagaaagagaaaataa
acatgtggatccctgcaaactctactttcattagggaagtgctcttggtg
aggtaagaagaaaagtaaggtcagttcaaattagtcagcaaggctggttc
aaacttctggagcttgaagcctagtggatgaatttttacaaatctgaact
cagtaaaactttggaaaatgtttcctgttgacaggtactacagaaaactt
tagttatgactaggtcagagtcctctttacagtatgtgacttcaccaagc
accatgacttttcacccaaatgagttgtctgacgaagaaaagcatgtgag
tctagtacgagtcaacttaccatgaagaaacgatacctatcaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42703914_42705022
seq2: B6Ng01-313F19.g_64_1159

seq1  GAATTCCAGAACAAATTTAAAAGCATGGTGTTGTGCTGGGCATGGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAAATTTAAAAGCATGGTGTTGTGCTGGGCATGGTGGTG  50

seq1  CATGCCTGTAATCTCAGCACTCAGGAGGCAGATGCAAGGGGATTTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTAATCTCAGCACTCAGGAGGCAGATGCAAGGGGATTTCTGCA  100

seq1  TTCAGTTCAAGGTAATCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCAAGGTAATCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGA  150

seq1  GTTATACAGAGAAACCCTGTCTCAAAAAAACAAAGAAAGAAAGAAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACAGAGAAACCCTGTCTCAAAAAAACAAAGAAAGAAAGAAACACC  200

seq1  TGGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAATGGCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAATGGCAGCAC  250

seq1  TTGCAGGCAGATATCTGTGAGATTGAGGCCAATATGGTCCCATGAGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCAGATATCTGTGAGATTGAGGCCAATATGGTCCCATGAGTCCC  300

seq1  AAAACAGGCAGGGCTTGATAGAGAGACCCTATCTCAAAGAATGAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGCAGGGCTTGATAGAGAGACCCTATCTCAAAGAATGAATAAAT  350

seq1  TTAAAAATAAAATTCTATACACACAATGAAAATGTGATATAGTTATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAATTCTATACACACAATGAAAATGTGATATAGTTATGCAA  400

seq1  GGATAACACAAAGGATGTAAATCAAATAAATGTAACTCAGCACAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACACAAAGGATGTAAATCAAATAAATGTAACTCAGCACAAAAATA  450

seq1  GTCTCAAAAATTAATAGTTGAATTGTCATTTCAGTACCTGCAGAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAATTAATAGTTGAATTGTCATTTCAGTACCTGCAGAAAATGC  500

seq1  ATTGGACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAGG  550

seq1  AATAAGAGAAACATGCCTCACCTGAATAAATCTTCTATTCAACAAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGAAACATGCCTCACCTGAATAAATCTTCTATTCAACAAACATA  600

seq1  GTCAACATTATAGTAATGGGAGAGAGAAAAAGTCTGTATAAAATAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACATTATAGTAATGGGAGAGAGAAAAAGTCTGTATAAAATAAGAAA  650

seq1  CAGGACCAGGGTATACATTCTCTCTACCTTATTCAACATAATACCCGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAGGGTATACATTCTCTCTACCTTATTCAACATAATACCCGAGA  700

seq1  CTTTGAAGCAATGAGCAAGTATAAAGAAACAAGATAGAAAGAGAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCAATGAGCAAGTATAAAGAAACAAGATAGAAAGAGAAAATAA  750

seq1  ACATGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGCTCTTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGCTCTTGGTG  800

seq1  AGGTAAGAAGAAAAGTAAGGTCAGTTCAAATTAGTCAGCAAGGCTGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGAAGAAAAGTAAGGTCAGTTCAAATTAGTCAGCAAGGCTGGTTC  850

seq1  AAACTTCTGGAGCTTGAAGCCTAGTGGATGAATTTTTACAAATCTGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGGAGCTTGAAGCCTAGTGGATGAATTTTTACAAATCTGAACT  900

seq1  CAGTAAAACTTTGGAAAATGTTTCCTGTTGACAGGTACTACAAGAAAACT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGTAAAACTTTGGAAAATGTTTCCTGTTGACAGGTACTAC-AGAAAACT  949

seq1  TTAGTTATGACTAGGTCAGAAGTCCTCTTTACAGTATGTGACTTCAACCA  1000
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  TTAGTTATGACTAGGTCAG-AGTCCTCTTTACAGTATGTGACTTC-ACCA  997

seq1  AGCACCCATGACCTTTTCACCCAAATGAGTTGTCCTGACAGAGAAAAGGC  1050
      |||| |||||| ||||||||||||||||||||| |||||  |||||| ||
seq2  AGCA-CCATGA-CTTTTCACCCAAATGAGTTGT-CTGACGAAGAAAA-GC  1043

seq1  ATGTGAGTTCTAGTAAGGAAGTCAAACTTACATTGAAGAAAGGATACCCT  1100
      ||||||| ||||||| |  |||| |||||||  |||||||| ||||||  
seq2  ATGTGAG-TCTAGTACG--AGTC-AACTTACCATGAAGAAACGATACC--  1087

seq1  TATCAAATG  1109
      |||||||||
seq2  TATCAAATG  1096