BAC Information

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BAC

Clone NameB6Ng01-313O13
Chromosome14 (Build37)7 (Build37)
Map Location 39,584,053 - 39,584,34823,629,024 - 23,630,088
singlet/doubletsingletsinglet
Overlap geneNrg3
Upstream geneLOC382872, LOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313O13.bB6Ng01-313O13.g
ACCGA104991GA104992
length1,0261,104
definitionB6Ng01-313O13.b B6Ng01-313O13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,584,053 - 39,584,348)(23,629,024 - 23,630,088)
sequence
gaattcccggatgaccaaagctatgtggatagaccctgcctgaaaacaag
tttatcatcaaataaatggaaagaaaagtgtagaattactaccttgctat
ccccttttatcccgaacaaatgggcttcaatcagtaatgaacgtgacaaa
ctatggtgtctcatgcttccataacgatgattttcgttttgtggttctgg
gatcgtcagattgcattcatctctgacaaatcgccacggagatctctcat
gccattgaagacaatgctactgttagatatcccaataaatgggggggggg
gggtccagaagatgtcccaaccggtaagaaggacacatgctccaatatgt
tcatagcagccttatttataatagccagaagctgtaaagaacctagatgt
ccctcaacagaggaacggatacaaaagaggtggtacatttacacaatgga
gtactactcagatattaaaaagaatgaatttatgaaattcctaggcaaat
ggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaaag
aactcaaatgaaatgtactcactgataagtggatattaacccagaaactt
agtatagtgagatataaggtacaatatgtaaaacatatgaaactgaagaa
gaatgaagaccaaagtatggacaatttgctcattcttagaattggaaaca
atcacccatggaaggagtaacagagacaaagtttggagctgagacaaaag
gatggtccatatagagacttccatattcagggatccatcccataattagc
ctccaagcgatgacaccattgcatacactagcaagcctttgttgcaagga
cggtgatatagctgtcccttgtgagactaggctggggcctagcaaacaca
gaagtggatgctcacagtcaactatggatggatcacagggcccccaatgg
agaaagtatccaaggagctaaagagatctgcaaccctatcggtggacaac
attatgaactaaccagtacccagagc
gaattccatgaacctaggagggaggggcggaaaccctggttctgtactaa
acccaaaaaaataaaacaaagatatttcgcgtggaattggagttactgaa
ttattttggtgcttttggagtggacatgagttcgcgctgggaaaactcac
gcctcatcacttgatgttctgaaatattgtaaatgatcacgagtgacatt
aattggactgaagaatctatgtaaaattctcctcactctccctctctagc
ctttcaccccagtactgaaaaccacacgaacggtagcagtgctgctaatt
tgagaacttacaatactttcttctgtgcgatccattccttaaatgttggc
tttgttttttttttggaaataagccttttaattttaactgagtttgattc
tcacatattctttgcgacgatttaatttgatttttttgactggtcaatta
ttgcttttgttcaacatcatgcatttccctgtactctccaccctttcttc
cccagcactccctgtgcttgctgatgcttatgctgcattttacttgttta
tatgttttctgtaggaacatgagggcctccatccaccagataaaattcaa
catctcacatacatgttacactgaatgctgttttctcctgaatactaatc
taggacagagacatttctttgagataaaagcaaaatattaacctattcaa
gtttacctgcagacttccaaaagaaataatgtttcgtgttgacttcagaa
gacaattttcactgaagaaaatagaagagaatttgtaagcagaaatcttt
gtttggaagaatcccaccttttgagcctcagtcacgatgaagatattcat
ctgaaggccagctgcagagcacagctcctatagaagcatatttcctagtg
cctggattgaggaacttctctgtgtcactctttgcctgagaagaatgcat
gaattcagaatggtttcttaatctcatgcatgctgtaaggtaacccaaca
aagtcagtttcagttctcatacatatagggcacgggaaagacatattagg
agttaattatggtcactggtgcatcacatttgtctggcatgggatctttg
ggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_39584053_39584348
seq2: B6Ng01-313O13.b_347_642

seq1  AGAAGATGCTACAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAG  50
      ||||||||   |||| |||||||||||||||||||||| |||||||||||
seq2  AGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCAATATGTTCATAG  50

seq1  CAGCTTTATTTTTAAGAGCTAGAAGCTGGAAAGAACCCAGATGTCCCTCA  100
      |||| |||||| ||| ||| |||||||| |||||||| ||||||||||||
seq2  CAGCCTTATTTATAATAGCCAGAAGCTGTAAAGAACCTAGATGTCCCTCA  100

seq1  ACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTA  150
      ||||||||| ||||||| || | |||||||||||||||||||||||||||
seq2  ACAGAGGAACGGATACAAAAGAGGTGGTACATTTACACAATGGAGTACTA  150

seq1  CTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGGAAATGGATGG  200
      ||||| ||||||||||||||||||||||||||||||||| |||||| |||
seq2  CTCAGATATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGG  200

seq1  ACCTGGAGGCCATCATCCTGAATGAGGTAACCCAATCACCAAAGAACTCA  250
      ||||||||| ||||||||||| ||||||||||||||||| ||||||||||
seq2  ACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCA  250

seq1  CATGATATGTTCTCACTGATAAGTGGCTATTAGCCCAGAAACTTAG  296
       |||| |||| ||||||||||||||| ||||| |||||||||||||
seq2  AATGAAATGTACTCACTGATAAGTGGATATTAACCCAGAAACTTAG  296

seq1: chr7_23629024_23630088
seq2: B6Ng01-313O13.g_111_1169

seq1  ACTAAACCATTAAAAATAAAACAAA-ATATAAATGCAGCATAAAAAT-AA  48
      ||||||||   |||||||||||||| ||||   | | || |  || |  |
seq2  ACTAAACCCAAAAAAATAAAACAAAGATAT---TTC-GCGTGGAATTGGA  46

seq1  TTAATTGAATT-TATTTATGTTATAGTAACATGTTAAAAATAATGTG-TA  96
       | | |||||| | ||  || | | | |    ||  | |  | |  |   
seq2  GTTACTGAATTATTTTGGTGCTTTTGGA----GTGGACATGAGTTCGCGC  92

seq1  TGGGAATA-TCATGTAAGATTAC-ACATATTAATGAAGTTGTGTAATTGA  144
      |||||| | ||| |    || ||   || ||  |||| |  ||||| |||
seq2  TGGGAAAACTCACGCCTCATCACTTGATGTT-CTGAAATATTGTAAATGA  141

seq1  GTTCAGGTGTAGAAAATTAAGTTG-TTG--GCTTTTGAGAAAATTTTATA  191
        ||| | ||   | ||||| | |  ||  |  | |  | ||| ||    
seq2  --TCACGAGT--GACATTAATTGGACTGAAGAATCTATGTAAAATTCTCC  187

seq1  CCACTCATCCACACAAGCACACACACACACACAAAAAAAAAAC-CACCA-  239
       |||||  || | | ||| |   ||| | ||  |   |||| | ||| | 
seq2  TCACTCTCCCTCTCTAGC-CTTTCAC-CCCAGTACTGAAAACCACACGAA  235

seq1  ------CA-TATTTCTAAT----AAAGCCAGA------TCTTCT----GA  268
            || |  | |||||     ||   | |      ||||||    ||
seq2  CGGTAGCAGTGCTGCTAATTTGAGAACTTACAATACTTTCTTCTGTGCGA  285

seq1  TCACACAGATGAACATAGTCTTACATATGTGTCCTCCATGGAAAAAAGAA  318
      ||       | ||  | | |||     ||| |  |   |||||| |||  
seq2  TCCATTCCTTAAATGTTGGCTT-----TGTTTTTTTTTTGGAAATAAGCC  330

seq1  TCCAACTTGCTAAAACGTTTCGTCTATTCATATTTTTCCTGAC--CTTAA  366
      |   | ||   |    ||||  |     |||||| ||   |||   ||||
seq2  TTTTAATTTTAACTGAGTTTGATTCTCACATATTCTTTGCGACGATTTAA  380

seq1  TTT--TTGTTCTAAAATGTCAGGTGTCAGAGCCTTAGCTGTGTCA----C  410
      |||  || || | |   ||||    | |  || ||   ||| |||    |
seq2  TTTGATTTTTTTGACTGGTCA---ATTATTGCTTT---TGT-TCAACATC  423

seq1  CTGCAGCTTCC------CTCCAAAATTACTAACACAATCACCGTTACACC  454
       ||||  | ||      |||||   || ||       || ||   || ||
seq2  ATGCATTTCCCTGTACTCTCCACCCTTTCT-------TCCCCAGCACTCC  466

seq1  CTTTGCAAGCTGATGCTTAGTCTGCATTTTACTTGTTTATATGTTTTCTG  504
      || |||  |||||||||||  |||||||||||||||||||||||||||||
seq2  CTGTGCTTGCTGATGCTTATGCTGCATTTTACTTGTTTATATGTTTTCTG  516

seq1  TAGGAACATGAGGGCCTCCATCCACCAGATAAAATTCAACATCTCACATA  554
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACATGAGGGCCTCCATCCACCAGATAAAATTCAACATCTCACATA  566

seq1  CATGTTACACTGAATGCTGTTTTCTCCTGAGTACTAATCTAGGACAGAGA  604
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATGTTACACTGAATGCTGTTTTCTCCTGAATACTAATCTAGGACAGAGA  616

seq1  CATTTCTTTGAGATAAAAGCAAAATATTAACCTATTCAAGTTTACCTGCA  654
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTGAGATAAAAGCAAAATATTAACCTATTCAAGTTTACCTGCA  666

seq1  GACTTCCAAAAGAAATAATGTTTCGTGTTGACTTCAGAAGACAATTTTCA  704
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAAAAGAAATAATGTTTCGTGTTGACTTCAGAAGACAATTTTCA  716

seq1  CTGAAGAAAATAGAAGAGAATTT-TAAGCAGAAATCTTTGTTTGGAAGAA  753
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGAAGAAAATAGAAGAGAATTTGTAAGCAGAAATCTTTGTTTGGAAGAA  766

seq1  TCCCACC-TTTGAGCCTCAGTCACGATGAAGATATTCATCTGAAGGCCAG  802
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTTTTGAGCCTCAGTCACGATGAAGATATTCATCTGAAGGCCAG  816

seq1  CTGCAGAGCACAGCTCCTATAGAAGCATATTTCCTAGTGCCTGAATTGAG  852
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGCAGAGCACAGCTCCTATAGAAGCATATTTCCTAGTGCCTGGATTGAG  866

seq1  GAACTTCTCTCTGTCACTTTTTGCCTGAGAAAGAATGCAATGAAATTCAG  902
      |||||||||| ||||||| |||||||||| |||||||| ||| |||||||
seq2  GAACTTCTCTGTGTCACTCTTTGCCTGAG-AAGAATGC-ATG-AATTCAG  913

seq1  AATGGTTTCTTATTCTCCATGCAATGATGTAAAGGTAACCCAACAAAGTC  952
      |||||||||||| ||| ||||| ||| ||| |||||||||||||||||||
seq2  AATGGTTTCTTAATCT-CATGC-ATGCTGT-AAGGTAACCCAACAAAGTC  960

seq1  CAAGTTTCCAGTCTCATAAAATAATAGGGCACCGGGAAAAGACATCCTTT  1002
        ||||||   ||||||| |   |||||||||  || ||||||||   ||
seq2  --AGTTTCAGTTCTCATACA--TATAGGGCAC--GGGAAAGACAT--ATT  1002

seq1  AGGGAGTTTATTATTGTGTCATCTGTCGTGTCCACACATTTGTCT-GCAT  1051
      | |||||| |||||   |||| |||  ||| |  ||||||||||| ||||
seq2  A-GGAGTTAATTAT--GGTCA-CTG--GTG-CATCACATTTGTCTGGCAT  1045

seq1  GGTGTCTTTGGGAT  1065
      ||  ||||||||||
seq2  GGGATCTTTGGGAT  1059