BAC Information

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BAC

Clone NameB6Ng01-313P03
Chromosome14 (Build37)
Map Location 30,479,296 - 30,665,026
singlet/doubletdoublet
Overlap geneCacna2d3, EG665431
Upstream geneLrtm1, Ppia-ps15
Downstream geneSelk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P03.bB6Ng01-313P03.g
ACCGA105019GA105020
length1,1721,132
definitionB6Ng01-313P03.b B6Ng01-313P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,479,296 - 30,480,460)(30,663,908 - 30,665,026)
sequence
gaattcagtacacaacaggaaatcctagcaaagttcctctaatgtgggtt
tcctcatctccagacaagaaggttaagaagatatcaacagcgaccacaga
atgtcacagccaggaaccttgaagattcgagagtctgcctgggtcagagg
aaaagcacagggatgggtgtccaatagttatgccaggattacagagaagg
gacttcctcaaatcataaaatgagagcaaggcttctggaaagtcagcatt
ccagaactttcttcatgttcatagttcaccagcaaagtagctacatttca
caggtagctgtatgactgattcaaagttctagtgaatttttacagaatgt
aaaagatgcccagcttccgaagacaatcaaaagatcttctaagggtcaac
taccaatggcctctcaaggtggagctttaagtatagctactgttgtctct
ccctagaaggccaacagagtggtttctggaggtgctcagacccctcagcc
aatccataaatggatgaaagcttaggaaccatgatggttacccaaatgaa
gcataagacccctcacctcaagtgtctgccccacagaggccatggacaga
acctggaaacaaccagctgacagggccttatctgggagggtacaagattc
tgctttttcaaagagcacaccaaaggatctggaaatcccactcagacacc
cacttcaccgttattcatttccaagcacttttcttcaaaaacattttttt
ttattttgacagattatctctgttaatggcatcaattagttgacttctga
ccaactgttctgttcaagatgcaggctgattggggtttagtaaaagcaca
agggcaaatgtgtggtttctaggcaaatttgcacagacagcggggagaga
tggcaaagctcagctcagtcgctgacagtgccactcaacctggcctcttt
gtgtgtatgtgtacttactaaagcacacagaaaatatgaagcctgggcta
gtggggaggagcttcaggaaggctgagctgctggcagacaaaagcctgcc
tgctctcctgcccaccacgtgaggcagagaataaccacaattgccagtat
ccaatactggattgtcctccatgggctttcggagacaattctaaaaagca
gcccaaggtagaactcaggagc
gaattcattgtgaagcagtttggccagtgacactatctgggaattggaga
catatttctcttttcctctctggtggctgtgaaaagcaaattgctgtagc
agacaccagaaaacaacagcaataaaaactaaagccatgggtaggacaga
atggagggaccagggtcggggagcaaagcaatagacactgaaacttgtga
agcacgggtggattttcaaagtgagcaagcgagacatgctgcttttattt
ccttaggagaggatcagttagaatgtaatcaagttgggaaggtaatcatg
ggaacaggagaaacagtaagtagaccactgtgtatagtagtcagaacaga
gctgcaaccagaagggcttatcgcatcgatgctccccctctcccttccct
tccctctccccctctgtctcctctccatctcccctttcctgcattcctgt
ttctctctctctctgtgtctctgtctgtctgtctgtgtctgtctttctgt
ctgtctgtctttctgtctgtctgtctgtctgtctgtctgtctgtctctct
ctctctctctctgcctcactggggagggactctgcaatgaagagaaaggc
atgtgtctgcaggtccttgtccctggagttctgatgctctgttaggtgtg
gactcttttcttctctgcagcattcccctgggcactacatttttgctaag
actggggatgactgaggtctttttgtggggagacagtgaggagagtgaca
gatggcagctggggatgtgcagaattaaatgcagatgcacaggggatgga
ccggggactttacagagggagtagaagcagctaatttttactctttaccg
ataccttgcctgagtcataccgtatacagagaatccaaccccaccctgac
tgctgacagtgaacttaaggccttcaaggtccccccaaagtcatgcatca
gcgccacctacttagagtgatgtttggtaatgttcactagctgttaggcc
tatggtattcttttaaaagaaggtaattattttaattggggggtgtgtct
cccagggggggtggagtgtccaatgggtttggggtgtggatctggtgggt
accaccttgtatgcagatgttctactaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30479296_30480460
seq2: B6Ng01-313P03.b_47_1218

seq1  GAATTCAGTACACAACAGGAAATCCTAGCAAAGTTCCTCTAATGTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACACAACAGGAAATCCTAGCAAAGTTCCTCTAATGTGGGTT  50

seq1  TCCTCATCTCCAGACAAGAAGGTTAAGAAGATATCAACAGCGACCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCTCCAGACAAGAAGGTTAAGAAGATATCAACAGCGACCACAGA  100

seq1  ATGTCACAGCCAGGAACCTTGAAGATTCGAGAGTCTGCCTGGGTCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAGCCAGGAACCTTGAAGATTCGAGAGTCTGCCTGGGTCAGAGG  150

seq1  AAAAGCACAGGGATGGGTGTCCAATAGTTATGCCAGGATTACAGAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACAGGGATGGGTGTCCAATAGTTATGCCAGGATTACAGAGAAGG  200

seq1  GACTTCCTCAAATCATAAAATGAGAGCAAGGCTTCTGGAAAGTCAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTCAAATCATAAAATGAGAGCAAGGCTTCTGGAAAGTCAGCATT  250

seq1  CCAGAACTTTCTTCATGTTCATAGTTCACCAGCAAAGTAGCTACATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTTTCTTCATGTTCATAGTTCACCAGCAAAGTAGCTACATTTCA  300

seq1  CAGGTAGCTGTATGACTGATTCAAAGTTCTAGTGAATTTTTACAGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCTGTATGACTGATTCAAAGTTCTAGTGAATTTTTACAGAATGT  350

seq1  AAAAGATGCCCAGCTTCCGAAGACAATCAAAAGATCTTCTAAGGGTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGCCCAGCTTCCGAAGACAATCAAAAGATCTTCTAAGGGTCAAC  400

seq1  TACCAATGGCCTCTCAAGGTGGAGCTTTAAGTATAGCTACTGTTGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGGCCTCTCAAGGTGGAGCTTTAAGTATAGCTACTGTTGTCTCT  450

seq1  CCCTAGAAGGCCAACAGAGTGGTTTCTGGAGGTGCTCAGACCCCTCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAAGGCCAACAGAGTGGTTTCTGGAGGTGCTCAGACCCCTCAGCC  500

seq1  AATCCATAAATGGATGAAAGCTTAGGAACCATGATGGTTACCCAAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATAAATGGATGAAAGCTTAGGAACCATGATGGTTACCCAAATGAA  550

seq1  GCATAAGACCCCTCACCTCAAGTGTCTGCCCCACAGAGGCCATGGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGACCCCTCACCTCAAGTGTCTGCCCCACAGAGGCCATGGACAGA  600

seq1  ACCTGGAAACAACCAGCTGACAGGGCCTTATCTGGGAGGGTACAAGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAACAACCAGCTGACAGGGCCTTATCTGGGAGGGTACAAGATTC  650

seq1  TGCTTTTTCAAAGAGCACACCAAAGGATCTGGAAATCCCACTCAGACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCAAAGAGCACACCAAAGGATCTGGAAATCCCACTCAGACACC  700

seq1  CACTTCACCGTTATTCATTTCCAAGCACTTTTCTTCAAAAACATTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACCGTTATTCATTTCCAAGCACTTTTCTTCAAAAACATTTTTTT  750

seq1  TTATTTTGACAGATTATCTCTGTTAATGGCATCAATTAGTTGACTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGACAGATTATCTCTGTTAATGGCATCAATTAGTTGACTTCTGA  800

seq1  CCAACTGTTCTGTTCAAGATGCAGGCTGATTGGGGTTTAGTAAAAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGTTCTGTTCAAGATGCAGGCTGATTGGGGTTTAGTAAAAGCACA  850

seq1  AGGGCAAATGTGTGGTTTCTAGGCAAA-TTGCACAGACAGCGGGGAGAGA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGGCAAATGTGTGGTTTCTAGGCAAATTTGCACAGACAGCGGGGAGAGA  900

seq1  TGGCAAAGCTCAGCTCAGTCGCTGACAGTGCCACTCAACCTGGCCTCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGCTCAGCTCAGTCGCTGACAGTGCCACTCAACCTGGCCTCTTT  950

seq1  GTGTGTATGTGTACTTACTAAAGCACACAGAAAATATGAAAGCCTGGGCT  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGTGTATGTGTACTTACTAAAGCACACAGAAAATATG-AAGCCTGGGCT  999

seq1  AGTGGG--AGAGCTTCAAGAAGGCTGAGCTGCTGGCAGACAAAAG-CTGC  1046
      ||||||   |||||||| ||||||||||||||||||||||||||| ||||
seq2  AGTGGGGAGGAGCTTCAGGAAGGCTGAGCTGCTGGCAGACAAAAGCCTGC  1049

seq1  CTGCTCTCCTGCCCACCACGTGAGGCAGAG-ATAA-CACAATTGCCAAGT  1094
      |||||||||||||||||||||||||||||| |||| |||||||||| |||
seq2  CTGCTCTCCTGCCCACCACGTGAGGCAGAGAATAACCACAATTGCC-AGT  1098

seq1  AATCAATACTTGATTGT-CTCCATGG--CTTCAGAGACAATTCTAAAAAG  1141
      |  ||||||| |||||| ||||||||   ||| |||||||||||||||||
seq2  ATCCAATACTGGATTGTCCTCCATGGGCTTTCGGAGACAATTCTAAAAAG  1148

seq1  CAG-CCAGGGTAGAAACCCAGGAGC  1165
      ||| ||| ||||| ||| |||||||
seq2  CAGCCCAAGGTAG-AACTCAGGAGC  1172

seq1: chr14_30663908_30665026
seq2: B6Ng01-313P03.g_68_1199 (reverse)

seq1  TGCCTTAGT-GAACATCTGCATACAAGTAGGTACACA-CAGATACACA-C  47
      ||||||||| |||||||||||||||||  ||||| || ||||| |||| |
seq2  TGCCTTAGTAGAACATCTGCATACAAGGTGGTACCCACCAGATCCACACC  50

seq1  ACAAACACA-TAGACA---CACACACACAGAGAGACACA-CACACAAATA  92
       ||||| || | ||||   ||| | | | | |||||||| | | ||| ||
seq2  CCAAACCCATTGGACACTCCACCCCCCCTGGGAGACACACCCCCCAATTA  100

seq1  AAATAAATAACTTCTTTTAAAAG-ATACCATAGGCCT-ACAGCTAGTGAA  140
      |||||| || ||||||||||||| ||||||||||||| ||||||||||||
seq2  AAATAATTACCTTCTTTTAAAAGAATACCATAGGCCTAACAGCTAGTGAA  150

seq1  CATTA-CAAACATCACTCTAAGTAGGTGGCGCTGATGCATGACTTTGGGG  189
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCAAACATCACTCTAAGTAGGTGGCGCTGATGCATGACTTTGGGG  200

seq1  GGACCTTGAAGGCC-TAAGTTCACTGTCAGCAGTCAGGGTGGGGTTGGAT  238
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGACCTTGAAGGCCTTAAGTTCACTGTCAGCAGTCAGGGTGGGGTTGGAT  250

seq1  TCTCTGTATACGGTATGACTCAGGCAAGGTATCGGTAAAGAGTAAAAATT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATACGGTATGACTCAGGCAAGGTATCGGTAAAGAGTAAAAATT  300

seq1  AGCTGCTTCTACTCCCTCTGTAAAGTCCCCGGTCCATCCCCTGTGCATCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTCTACTCCCTCTGTAAAGTCCCCGGTCCATCCCCTGTGCATCT  350

seq1  GCATTTAATTCTGCACAT-CCCAGCTGCCATCTGTCACTCTCCTCACTGT  387
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCATTTAATTCTGCACATCCCCAGCTGCCATCTGTCACTCTCCTCACTGT  400

seq1  CTCCCCACAAAAAGACCTCAGTCATCCCCAGTCTTAGCAAAAATGTAGTG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACAAAAAGACCTCAGTCATCCCCAGTCTTAGCAAAAATGTAGTG  450

seq1  CCCAGGGGAATGCTGCAGAGAAGAAAAGAGTCCACACCTAACAGAGCATC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGAATGCTGCAGAGAAGAAAAGAGTCCACACCTAACAGAGCATC  500

seq1  AGAACTCCAGGGACAAGGACCTGCAGACACATGCCTTTCTCTTCATTGCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCAGGGACAAGGACCTGCAGACACATGCCTTTCTCTTCATTGCA  550

seq1  GAGTCCCTCCCCAGTGAGGCAGAGAGAGAGAGAGAGAGACAGACAGACAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTCCCCAGTGAGGCAGAGAGAGAGAGAGAGAGACAGACAGACAG  600

seq1  ACAGACAGACAGACAGACAGAAAGACAGACAGACAGAAAGACAGACACAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGACAGAAAGACAGACAGACAGAAAGACAGACACAG  650

seq1  ACAGACAGACAGAGACACAGAGAGAGAGAGAAACAGGAATGCAGGAAAGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGAGACACAGAGAGAGAGAGAAACAGGAATGCAGGAAAGG  700

seq1  GGAGATGGAGAGGAGACAGAGGGGGAGAGGGAAGGGAAGGGAGAGGGGGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAGAGGAGACAGAGGGGGAGAGGGAAGGGAAGGGAGAGGGGGA  750

seq1  GCATCGATGCGATAAGCCCTTCTGGTTGCAGCTCTGTTCTGACTACTATA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGATGCGATAAGCCCTTCTGGTTGCAGCTCTGTTCTGACTACTATA  800

seq1  CACAGTGGTCTACTTACTGTTTCTCCTGTTCCCATGATTACCTTCCCAAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGTCTACTTACTGTTTCTCCTGTTCCCATGATTACCTTCCCAAC  850

seq1  TTGATTACATTCTAACTGATCCTCTCCTAAGGAAATAAAAGCAGCATGTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTACATTCTAACTGATCCTCTCCTAAGGAAATAAAAGCAGCATGTC  900

seq1  TCGCTTGCTCACTTTGAAAATCCACCCGTGCTTCACAAGTTTCAGTGTCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTGCTCACTTTGAAAATCCACCCGTGCTTCACAAGTTTCAGTGTCT  950

seq1  ATTGCTTTGCTCCCCGACCCTGGTCCCTCCATTCTGTCCTACCCATGGCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTGCTCCCCGACCCTGGTCCCTCCATTCTGTCCTACCCATGGCT  1000

seq1  TTAGTTTTTATTGCTGTTGTTTTCTGGTGTCTGCTACAGCAATTTGCTTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTATTGCTGTTGTTTTCTGGTGTCTGCTACAGCAATTTGCTTT  1050

seq1  TCACAGCCACCAGAGAGGAAAAGAGAAATATGTCTCCAATTCCCAGATAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCACCAGAGAGGAAAAGAGAAATATGTCTCCAATTCCCAGATAG  1100

seq1  TGTCACTGGCCAAACTGCTTCACAATGAATTC  1119
      ||||||||||||||||||||||||||||||||
seq2  TGTCACTGGCCAAACTGCTTCACAATGAATTC  1132