BAC Information

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BAC

Clone NameB6Ng01-315A24
Chromosome14 (Build37)
Map Location 56,859,417 - 56,860,047
singlet/doubletsinglet
Overlap genenone
Upstream geneDhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc
Downstream geneLOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315A24.bB6Ng01-315A24.g
ACCGA105813GA105814
length92949
definitionB6Ng01-315A24.b B6Ng01-315A24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttaactctgtatcccagtttttaatagggttatttgaatttctgg
agtccagcttcttgagttatttgtattaaggaaaagtaaatg
gaattcaagagggtataggagaacaggggaaggattagagggaagaaaag
gaagggataagttatataactataccttaattttaatattaaacagtatg
taactaaacatttccttttgttttctgtataaaattaaaagcaataaaga
aaacatgtcctacccatagaagtgttgcagatgtggctgctatatcacat
gtgcatcagtaggtggcaaatagggaagaggccatgcctgtggttagtgt
tctgagctaagaagatcttaataattggtagcttaacattccctgagaaa
agcaaccatgaaaagactaccaatctagtatcagggagccagggaaggaa
actagccttagacaaccaccagtctggtgctgcataggctgtgatggctc
ccaggacaaagaatgcagaggcccagatgactcatgtctagtgtcatagt
gcatgagagtagcatagcaccccaagactactcctgagacacccccagac
actcagagacccagtctccactaagaggagcaagcaagtgctggaaaatg
gaagagaaagagaaacagaaggatgtgggcacaatgaagagaggcagaac
tagagactcaatgggagagaggaacagattgatatgagtagttagtgatg
gcacctgggaccatggtgaactcctggcctgttctgccactttggaccat
atctgtatcaatgtctcctgaagcagcagggatctggtaccatcaaagtc
aaagcagatgtctctggtctgggctacagcacagggatgtgttgatgtct
aaagggctatgcagaactggccccacccctcgtctggaaattgtgggaga
gctggtcctgggggcattagatcaagagcgctgacctggctcctagccaa
cagcaatattcagggagagtgggtcccatgctctgtaggagttgagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56859417_56860047
seq2: B6Ng01-315A24.g_243_902

seq1  AGATGTGGCTGCTGTATCACATGTGCATCAGTAGGTGGCAGAGAGG--AG  48
      ||||||||||||| |||||||||||||||||||||||||| | |||  ||
seq2  AGATGTGGCTGCTATATCACATGTGCATCAGTAGGTGGCAAATAGGGAAG  50

seq1  AGGCAGTATGTCCACACTCAATGTTCTGACCTATGAATATCTGAAT----  94
      ||||   ||| |     | | |||||||| ||| ||| |||| |||    
seq2  AGGC--CATGCCTGTGGTTAGTGTTCTGAGCTAAGAAGATCTTAATAATT  98

seq1  --TAGTGTAACATTCCCTAGAG-AAAGCAAGCCT---AAG-CT-CCAGTC  136
        |||  ||||||||||| ||| ||||||| | |   ||| || ||| ||
seq2  GGTAGCTTAACATTCCCT-GAGAAAAGCAACCATGAAAAGACTACCAATC  147

seq1  CAGCACCAAAGA-TCAAGACAGGGAGCTAGCCTGAGCTGAACACCAGTCT  185
       || | ||  ||  || |  ||| | ||||||| ||   | |||||||||
seq2  TAGTATCAGGGAGCCAGGGAAGGAAACTAGCCTTAGACAACCACCAGTCT  197

seq1  CCCACATGCA-GGCCTGGGAGGG------GGGCAAATTAT----ACTCTC  224
          | ||||  | ||| || ||      || ||||  ||    |  | |
seq2  GGTGC-TGCATAGGCTGTGATGGCTCCCAGGACAAAGAATGCAGAGGCCC  246

seq1  A-ATGACCCATGCCTGGCACCATAATGCATGAACAGGGCACAGCACTCCT  273
      | ||||| |||| || |   |||| |||||||     ||| ||||| || 
seq2  AGATGACTCATGTCTAGTGTCATAGTGCATGAGAGTAGCATAGCAC-CCC  295

seq1  GAGACTACTCCTG-GAAGACCCCAGACACTCAGAGACCACAGGTACCACT  322
       |||||||||||| ||   ||||||||||||||||||| |||   |||||
seq2  AAGACTACTCCTGAGACACCCCCAGACACTCAGAGACC-CAGTCTCCACT  344

seq1  AAGAAAAGCAAGCAAGGAATTAAGTAGTGGAGAAATGGAAAAGAAAGAGA  372
      ||||  |||||||        ||||  |||| |||||||| |||||||||
seq2  AAGAGGAGCAAGC--------AAGTGCTGGA-AAATGGAAGAGAAAGAGA  385

seq1  AACAGAAGGATGTGGGCACAATGAAGAGAGGCAGAACTAGATACTTGA-G  421
      ||||||||||||||||||||||||||||||||||||||||| |||  | |
seq2  AACAGAAGGATGTGGGCACAATGAAGAGAGGCAGAACTAGAGACTCAATG  435

seq1  GTAGTGAGAAAGAGTTTGTTGTGAGTATCTGGTGATGCTGCCTGAGACCA  471
      | || ||| || || ||| | ||||||  | ||||||   |||| |||||
seq2  GGAGAGAGGAACAGATTGATATGAGTAGTTAGTGATGGCACCTGGGACCA  485

seq1  TGATGAGGTCCTAGCCTGTGCTGCCACTGGGGGCCACATCTGGGGCCATG  521
      || |||  |||| |||||| ||||||||  || ||| |||||   | |||
seq2  TGGTGAACTCCTGGCCTGTTCTGCCACTTTGGACCATATCTGTATCAATG  535

seq1  AC-CCTGCAGTAGCAGGTTTCTGTTATCATCA-----AAAGC--------  557
       | |||| || ||||||  |||| || |||||     |||||        
seq2  TCTCCTGAAGCAGCAGGGATCTGGTACCATCAAAGTCAAAGCAGATGTCT  585

seq1  CTGGTATGGGATGCCACCAGA-GGATATATTGTTGTCT-GAGGACTGTGC  605
      ||||| |||| |  || || | |||| | ||| |||||  ||| || |||
seq2  CTGGTCTGGGCT-ACAGCACAGGGATGTGTTGATGTCTAAAGGGCTATGC  634

seq1  ATAACGGGCCCCACCCCTCGCCTGGA  631
      | ||| |||||||||||||| |||||
seq2  AGAACTGGCCCCACCCCTCGTCTGGA  660