BAC Information

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BAC

Clone NameB6Ng01-315C13
Chromosome14 (Build37)
Map Location 3,987,958 - 4,176,528
singlet/doubletdoublet
Overlap geneLOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790
Upstream geneLOC100040452, LOC100040657, LOC100040671, LOC100040682, LOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688
Downstream geneLOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315C13.bB6Ng01-315C13.g
ACCGA105881GA105882
length1,1041,145
definitionB6Ng01-315C13.b B6Ng01-315C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,175,413 - 4,176,528)(3,987,958 - 3,989,100)
sequence
gaattctgtaaccaaaggtgtgctctataatggctcaccaatggagatct
caaagtaacagtaataaaaaggaattcgtgagcagcaggggagaaatatt
tgaaaatctaaaacactaaagaaagtcaaggaactttttatgaaccaaat
gagacaatgtgctatgtatttgaaattgtagtaggcattttgagaaatag
attttgatgcaggagacctgccataaattccaagtcagattgggcctgag
gtatgctaggggactccctcaaaacaaagaaacacactgaacaaagaaaa
gacaagtggatgtcccttaggtcagagaaccactgtgaaagctttgaact
aagagaagcagttagtaggtcagatactattttaaattggggattccttg
aaagtttctcagaagcaatgggcttccaccaggcttttcccctgagctgc
ctttagtgggaaatgaggcagctttcctttctttgcctacacagtatttc
cacccatcctgggtttcctctacagctgcagatgctgtagagttgcagtc
atttacttagcaggaaccagcttagactggctttgcttttcaaagttaca
ggccttaggagctggctactgaattctgtgttgatcagagcgggctgcat
ggctaggtttttataagtaacggatacctgaactttgaggaattaattgc
ctggctcctggatgtgaagctgtgcaatgtgtctctaagcaatcagcatc
ctttcaaagagtaagaaatggaacccgtcttctttcccaaataggcatgg
gccttagaccacctttcacttcaatcacccttgactggattctgggaaat
gttactatataaaacccgaaagtttaatgtgtaggttgaaatacaggata
gctgccaaagtgacctttcactatatagagtgtggggaagagaacattag
atcatatcacattttggtcccagcttgtgccctctgtctcttacataaag
gaaaagtctgactgtgtcagccttttactaggtcttttgtctggactgtc
tgtgaccaaatagtcagactagacaagttcaatataaggcaattgttttg
tttt
gaattcttacttctattctgagaatccctgggaacaataataaaaccttg
ccttccctcttgtggttgcccctgctatagggtcctctgaagccatcagg
acctgggaggatcttctatccctttgcatcaaaaggctgcaacaagcaag
gctggaattaatgccaggagctgaaatcctatattttgattccccactac
tccattttaggattacttgggcctttttatttgggggctgttcaagattc
cttttggctttcttgagctcagtctcctagctcttcttgatttgctctta
attgtgcataatgcctcttccagttcctaagatattgtggttcaagaaaa
aataactgaggaagttgttgtataccatgggaaaaacttagtgattgtgg
ctgagtcccaattattctctgcaagtcttaggtgctttacaaaagaaaac
atggacttgggttattaaaggaacacaccacaacagcctcaactcaagaa
tttctgctctatgaggcactgtattttttttttctgaaaaatcatcagat
aaatgaaattacagaagcagaatgaatgtctggttaatattttatgttaa
caaatacacaataatgggaaaggaaaacaattttgggaaatgagccaggt
agctctgacatcaaccacctcattaaatagctgtcaagactcaactgctc
atgaattaagcttagtgccctggtagaaacatcctgtgttgaaaaatcct
tagcctaagcacaaaggttttgctgactccctttcttttgctttgcattc
attttctattttcttttctgcgttttctttaccttataattttttttttt
tgcataccaacttgatctgaaactcatttttacatggagctaattttttt
ctattacattccccatttttttagtggaatcaatcaaactattgattcat
gttgaggtacaggatgatggggagcctgtaaaggctaatatttaaggtca
cttgtcttccctcctgggctgtaggaagaatgagtaaagtattggtgctg
gaattttaagttccggatcactgcagttactttgacatccatgaaggaca
ttggatgtgttaaaagatggaacagaaaatatggcattctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4175413_4176528
seq2: B6Ng01-315C13.b_48_1151 (reverse)

seq1  AAAACAAAACAATGCCCTTTTATTGACCTTTGTCTTAGTCTGACTATTTG  50
      |||||||||||||  |||| |||||| | ||||| |||||||||||||||
seq2  AAAACAAAACAATTGCCTTATATTGAAC-TTGTC-TAGTCTGACTATTTG  48

seq1  GTCACAGACAAGTCAAGACAAAGACCCCTAGTAAAAGGCCTGACACAGTT  100
      ||||||||| |||| ||||||| |  |||||||||||| ||||||||| |
seq2  GTCACAGAC-AGTCCAGACAAA-AGACCTAGTAAAAGG-CTGACACAG-T  94

seq1  CAGACTTTTCCTTTTAATGTAAAGAAGACAGAGGGCACAAGCTGGGACCA  150
      ||||||||||||||  ||||||   |||||||||||||||||||||||||
seq2  CAGACTTTTCCTTT--ATGTAA--GAGACAGAGGGCACAAGCTGGGACCA  140

seq1  AAATGTGATTATGATTCTAATGTTCTCTTCCCCACACTCTATATAGTGAA  200
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  AAATGTGA-TATGA-TCTAATGTTCTCTTCCCCACACTCTATATAGTGAA  188

seq1  AGGTCACTTTGGCAGCTATCCTGTATTTCAACCTACACATTAAACTTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTTTGGCAGCTATCCTGTATTTCAACCTACACATTAAACTTTCG  238

seq1  GGTTTTATATAGTAACATTTCCCAGAATCCAGTCAAGGGTGATTGAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATATAGTAACATTTCCCAGAATCCAGTCAAGGGTGATTGAAGTG  288

seq1  AAAGGTGGTCTAAGGCCCATGCCTATTTGGGAAAGAAGACGGGTTCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGTCTAAGGCCCATGCCTATTTGGGAAAGAAGACGGGTTCCATT  338

seq1  TCTTACTCTTTGAAAGGATGCTGATTGCTTAGAGACACATTGCACAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTCTTTGAAAGGATGCTGATTGCTTAGAGACACATTGCACAGCTT  388

seq1  CACATCCAGGAGCCAGGCAATTAATTCCTCAAAGTTCAGGTATCCGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCAGGAGCCAGGCAATTAATTCCTCAAAGTTCAGGTATCCGTTAC  438

seq1  TTATAAAAACCTAGCCATGCAGCCCGCTCTGATCAACACAGAATTCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAACCTAGCCATGCAGCCCGCTCTGATCAACACAGAATTCAGTA  488

seq1  GCCAGCTCCTAAGGCCTGTAACTTTGAAAAGCAAAGCCAGTCTAAGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCCTAAGGCCTGTAACTTTGAAAAGCAAAGCCAGTCTAAGCTGG  538

seq1  TTCCTGCTAAGTAAATGACTGCAACTCTACAGCATCTGCAGCTGTAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTAAGTAAATGACTGCAACTCTACAGCATCTGCAGCTGTAGAGG  588

seq1  AAACCCAGGATGGGTGGAAATACTGTGTAGGCAAAGAAAGGAAAGCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGGATGGGTGGAAATACTGTGTAGGCAAAGAAAGGAAAGCTGCC  638

seq1  TCATTTCCCACTAAAGGCAGCTCAGGGGAAAAGCCTGGTGGAAGCCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCCACTAAAGGCAGCTCAGGGGAAAAGCCTGGTGGAAGCCCATT  688

seq1  GCTTCTGAGAAACTTTCAAGGAATCCCCAATTTAAAATAGTATCTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAGAAACTTTCAAGGAATCCCCAATTTAAAATAGTATCTGACCT  738

seq1  ACTAACTGCTTCTCTTAGTTCAAAGCTTTCACAGTGGTTCTCTGACCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTGCTTCTCTTAGTTCAAAGCTTTCACAGTGGTTCTCTGACCTAA  788

seq1  GGGACATCCACTTGTCTTTTCTTTGTTCAGTGTGTTTCTTTGTTTTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATCCACTTGTCTTTTCTTTGTTCAGTGTGTTTCTTTGTTTTGAGG  838

seq1  GAGTCCCCTAGCATACCTCAGGCCCAATCTGACTTGGAATTTATGGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCTAGCATACCTCAGGCCCAATCTGACTTGGAATTTATGGCAGG  888

seq1  TCTCCTGCATCAAAATCTATTTCTCAAAATGCCTACTACAATTTCAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCATCAAAATCTATTTCTCAAAATGCCTACTACAATTTCAAATA  938

seq1  CATAGCACATTGTCTCATTTGGTTCATAAAAAGTTCCTTGACTTTCTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCACATTGTCTCATTTGGTTCATAAAAAGTTCCTTGACTTTCTTTA  988

seq1  GTGTTTTAGATTTTCAAATATTTCTCCCCTGCTGCTCACGAATTCCTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAGATTTTCAAATATTTCTCCCCTGCTGCTCACGAATTCCTTTT  1038

seq1  TATTACTGTTACTTTGAGATCTCCATTGGTGAGCCATTATAGAGCACACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGTTACTTTGAGATCTCCATTGGTGAGCCATTATAGAGCACACC  1088

seq1  TTTGGTTACAGAATTC  1116
      ||||||||||||||||
seq2  TTTGGTTACAGAATTC  1104

seq1: chr14_3987958_3989100
seq2: B6Ng01-315C13.g_65_1209

seq1  GAATTCTTACTTCTATTCTGAGAATCCCTGGGAACAATAATAAAACCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTCTATTCTGAGAATCCCTGGGAACAATAATAAAACCTTG  50

seq1  CCTTCCCTCTTGTGGTTGCCCCTGCTATAGGGTCCTCTGAAGCCATCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTCTTGTGGTTGCCCCTGCTATAGGGTCCTCTGAAGCCATCAGG  100

seq1  ACCTGGGAGGATCTTCTATCCCTTTGCATCAAAAGGCTGCAACAAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGGATCTTCTATCCCTTTGCATCAAAAGGCTGCAACAAGCAAG  150

seq1  GCTGGAATTAATGCCAGGAGCTGAAATCCTATATTTTGATTCCCCACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATTAATGCCAGGAGCTGAAATCCTATATTTTGATTCCCCACTAC  200

seq1  TCCATTTTAGGATTACTTGGGCCTTTTTATTTGGGGGCTGTTCAAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTAGGATTACTTGGGCCTTTTTATTTGGGGGCTGTTCAAGATTC  250

seq1  CTTTTGGCTTTCTTGAGCTCAGTCTCCTAGCTCTTCTTGATTTGCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTTTCTTGAGCTCAGTCTCCTAGCTCTTCTTGATTTGCTCTTA  300

seq1  ATTGTGCATAATGCCTCTTCCAGTTCCTAAGATATTGTGGTTCAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCATAATGCCTCTTCCAGTTCCTAAGATATTGTGGTTCAAGAAAA  350

seq1  AATAACTGAGGAAGTTGTTGTATACCATGGGAAAAACTTAGTGATTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGAGGAAGTTGTTGTATACCATGGGAAAAACTTAGTGATTGTGG  400

seq1  CTGAGTCCCAATTATTCTCTGCAAGTCTTAGGTGCTTTACAAAAGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCCAATTATTCTCTGCAAGTCTTAGGTGCTTTACAAAAGAAAAC  450

seq1  ATGGACTTGGGTTATTAAAGGAACACACCACAACAGCCTCAACTCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTGGGTTATTAAAGGAACACACCACAACAGCCTCAACTCAAGAA  500

seq1  TTTCTGCTCTATGAGGCACTGTATTTTTTTTTTCTGAAAAATCATCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTCTATGAGGCACTGTATTTTTTTTTTCTGAAAAATCATCAGAT  550

seq1  AAATGAAATTACAGAAGCAGAATGAATGTCTGGTTAATATTTTATGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATTACAGAAGCAGAATGAATGTCTGGTTAATATTTTATGTTAA  600

seq1  CAAATACACAATAATGGGAAAGGAAAACAATTTTGGGAAATGAGCCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACACAATAATGGGAAAGGAAAACAATTTTGGGAAATGAGCCAGGT  650

seq1  AGCTCTGACATCAACCACCTCATTAAATAGCTGTCAAGACTCAACTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGACATCAACCACCTCATTAAATAGCTGTCAAGACTCAACTGCTC  700

seq1  ATGAATTAAGCTTAGTGCCCTGGTAGAAACATCCTGTGTTGAAAAATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAAGCTTAGTGCCCTGGTAGAAACATCCTGTGTTGAAAAATCCT  750

seq1  TAGCCTAAGCAC-AAGGTTTTGCTGACTCCCTTTCTTTTGCTTTGCATTC  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAAGCACAAAGGTTTTGCTGACTCCCTTTCTTTTGCTTTGCATTC  800

seq1  ATTTTCTATTTTCTTTTCTGCGTTTTCTTTACCTTATAA-TTTTTTTTTT  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTTCTATTTTCTTTTCTGCGTTTTCTTTACCTTATAATTTTTTTTTTT  850

seq1  TGCATACCAACTTGATCTGAAACTCATTTTTACATGGAGCTAA-TTTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCATACCAACTTGATCTGAAACTCATTTTTACATGGAGCTAATTTTTTT  900

seq1  CTATTACATTCCCCATTTTTTTAGTGGAATCAATCAAACTATTGATTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACATTCCCCATTTTTTTAGTGGAATCAATCAAACTATTGATTCAT  950

seq1  GTTGAGGTACAGGATGATGGGGAGCCTGT-AAGGCTAATATTT-AGGTCA  995
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  GTTGAGGTACAGGATGATGGGGAGCCTGTAAAGGCTAATATTTAAGGTCA  1000

seq1  C-TGTCTTCCC-CCT-GGCTGTAGG-AGAATGAGTAAAGTA-TGGTGGCT  1040
      | ||||||||| ||| ||||||||| ||||||||||||||| |||||   
seq2  CTTGTCTTCCCTCCTGGGCTGTAGGAAGAATGAGTAAAGTATTGGTGCTG  1050

seq1  GAATTTTAAGGTTCCCGGAATCCACTGCAGTTAACCTTGACATCCATGGA  1090
      ||||||||||  | |||||   |||||||||| || ||||||||||| ||
seq2  GAATTTTAAG--TTCCGGA--TCACTGCAGTT-ACTTTGACATCCAT-GA  1094

seq1  GGGACATTGAGATGTGTAAAGAAGTGAGACAGAGAAAAATAT-GCA-TCT  1138
       |||||||| ||||||| || |  ||  ||||   ||||||| ||| |||
seq2  AGGACATTG-GATGTGTTAAAAGATGGAACAG---AAAATATGGCATTCT  1140

seq1  GTTTT  1143
      |||||
seq2  GTTTT  1145