BAC Information

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BAC

Clone NameB6Ng01-316F10
Chromosome14 (Build37)
Map Location 110,682,705 - 110,842,658
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316F10.bB6Ng01-316F10.g
ACCGA106759GA106760
length1,1251,066
definitionB6Ng01-316F10.b B6Ng01-316F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,682,705 - 110,683,829)(110,841,591 - 110,842,658)
sequence
gaattctcttagttattttctttctctttcagaatatacatacatacata
ttatatatgtatatatacatacatattatatatgtatatatatatatata
tgatactaaagagaaaatggttcatccaatacaattgttaaatttagaaa
acaatctcaatgaagtcaatacaaactcaactaaaatggttttcgataaa
aaaaaaaaaataaagtacctcaaagaaagacacctgactatcccagggac
cctccattctcccattaccttcccttcatttccatcaaactcctgaacca
tacagtaatccttcctgccctgacccatctttcttactctctgagctctc
tgggacaaggcaagttgccctgaacagcctcctattttaggggcatctcc
agtctccgtctgcctctccacccagcccatcatatctgagacacttaaac
catacaggttatcctcccttccccacccatcttccctactctttgagccc
tctgcaccaagccaagtttccctgaacaacctgcttttccaaggggacct
ccattctcctaccacctctcctccacctccatcagactcctgaaccacat
aggtaagctttccttcccccacctgttggaggattttctctgtccaatca
cattaaggcagtggctgtcctgtgattggacaggaaaagggaggcggaga
taagcgtttggaggacagggagagattgagaggaaacaggagcagaaaca
ggagaagccaacatggaggcagaggaacaggagaatgatcctgatcccat
gtggttttaaacagtcacaagtagctaagatattcacaaggttggaataa
ttgggttaaagctttatctttatgaattggctctgagattattatattgg
tatcttgtaaattgtgatcttattgttataaatctgggttggatatttaa
gctttacgagttgtgtttgtattggataactcggtgttgacttttttttt
tttaatattttccaacaacagggcttacccatccatggatctgtttataa
cacagcaaagaaggactggttctagctcctgtacctttcaatatttagta
tgaaggaagaatttataccaatgat

gaattctccagatatggaaggaagacttttagtagtaggcctgaagcttc
ctagattataattagacaagagttagttatcattaaaagtctcactatta
ctcctttagcaacacctttgcatgatggtcattgttatgatttgtagaat
aaacttgtgggtaagatgattaattactttacttccttggcagctttcaa
ggaaacttttgatgcactaagaggtagatttcagaatttaagatttgaga
tctataccagctcaattcctcaatatcctctgtccaaagtaaggaatatt
ttcagcaagattttaaccttaaattccaagaaatgagaaagtcagtagtc
tacattgtttggaggtttttgtgaacttcacacaacttacaacttgaaca
gagatttccattttatggaactagttttagacatgttttatattttatat
ttcttcaattattatcttggaattacaagataaattagaaaaaagacaca
taggcatggtcttagatactcttatggtttatttttatattaattttaac
aaaaatgacaaatttgtgtcatgatgtatcaatagataatgcagttaggg
cagcataaatgctggtattgaataataaaacaggcagaatcagagataac
ttttgagaactcatagatggaggcattctgcaggtcaaatatacctcctg
aatgactgggggaggggtaaaagcagctgacagaagtggaacttctaatt
tgatatctttgggtaaaatttctagtgacagcatcagagagaatttctaa
aatgcagtatttcagagaacagacagaaggaagaggatgtgctatagaaa
gctgtgttagatgactcataaagtgattgtgtgatgggcagacagtgatg
tctaggggtcacatgaaagatttaaaaaaaagatagctttataaaataca
agcaaaaattccacacttttctatttacatactgtcttacataataatgc
atcaaatagattcatgggcaaagtagatttattgcagattacaataatac
ttttattaccatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110682705_110683829
seq2: B6Ng01-316F10.b_49_1173

seq1  GAATTCTCTTAGTTATTTTCTTTCTCTTTCAGAATATACATACATACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGTTATTTTCTTTCTCTTTCAGAATATACATACATACATA  50

seq1  TTATATATGTATATATACATACATATTATATATGTATATATATATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATGTATATATACATACATATTATATATGTATATATATATATATA  100

seq1  TGATACTAAAGAGAAAATGGTTCATCCAATACAATTGTTAAATTTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTAAAGAGAAAATGGTTCATCCAATACAATTGTTAAATTTAGAAA  150

seq1  ACAATCTCAATGAAGTCAATACAAACTCAACTAAAATGGTTTTCGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCAATGAAGTCAATACAAACTCAACTAAAATGGTTTTCGATAAA  200

seq1  AAAAAAAAAATAAAGTACCTCAAAGAAAGACACCTGACTATCCCAGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATAAAGTACCTCAAAGAAAGACACCTGACTATCCCAGGGAC  250

seq1  CCTCCATTCTCCCATTACCTTCCCTTCATTTCCATCAAACTCCTGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTCTCCCATTACCTTCCCTTCATTTCCATCAAACTCCTGAACCA  300

seq1  TACAGTAATCCTTCCTGCCCTGACCCATCTTTCTTACTCTCTGAGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAATCCTTCCTGCCCTGACCCATCTTTCTTACTCTCTGAGCTCTC  350

seq1  TGGGACAAGGCAAGTTGCCCTGAACAGCCTCCTATTTTAGGGGCATCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAAGGCAAGTTGCCCTGAACAGCCTCCTATTTTAGGGGCATCTCC  400

seq1  AGTCTCCGTCTGCCTCTCCACCCAGCCCATCATATCTGAGACACTTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCGTCTGCCTCTCCACCCAGCCCATCATATCTGAGACACTTAAAC  450

seq1  CATACAGGTTATCCTCCCTTCCCCACCCATCTTCCCTACTCTTTGAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGTTATCCTCCCTTCCCCACCCATCTTCCCTACTCTTTGAGCCC  500

seq1  TCTGCACCAAGCCAAGTTTCCCTGAACAACCTGCTTTTCCAAGGGGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACCAAGCCAAGTTTCCCTGAACAACCTGCTTTTCCAAGGGGACCT  550

seq1  CCATTCTCCTACCACCTCTCCTCCACCTCCATCAGACTCCTGAACCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCCTACCACCTCTCCTCCACCTCCATCAGACTCCTGAACCACAT  600

seq1  AGGTAAGCTTTCCTTCCCCCACCTGTTGGAGGATTTTCTCTGTCCAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCTTTCCTTCCCCCACCTGTTGGAGGATTTTCTCTGTCCAATCA  650

seq1  CATTAAGGCAGTGGCTGTCCTGTGATTGGACAGGAAAAGGGAGGCGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGCAGTGGCTGTCCTGTGATTGGACAGGAAAAGGGAGGCGGAGA  700

seq1  TAAGCGTTTGGAGGACAGGGAGAGATTGAGAGGAAACAGGAGCAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGTTTGGAGGACAGGGAGAGATTGAGAGGAAACAGGAGCAGAAACA  750

seq1  GGAGAAGCCAACATGGAGGCAGAGGAACAGGAGAATGATCCTGATCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCCAACATGGAGGCAGAGGAACAGGAGAATGATCCTGATCCCAT  800

seq1  GTGGTTTTAAACAGTCACAAGTAGCTAAGATATTCACAAGGTTGGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTAAACAGTCACAAGTAGCTAAGATATTCACAAGGTTGGAATAA  850

seq1  TTGGGTTAAAGCTTTATCTTTATGAATTGGCTCTGAGATTATTATATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTAAAGCTTTATCTTTATGAATTGGCTCTGAGATTATTATATTGG  900

seq1  TATCTTGTAAATTGTGATCTTATTGTTATAAATCT-GGTTGGATAATTAA  949
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  TATCTTGTAAATTGTGATCTTATTGTTATAAATCTGGGTTGGATATTTAA  950

seq1  GCTTTACGAGTTGTGTTTGTATTGGATAACTCGGTGTTGAC-TTTTTTTT  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTTTACGAGTTGTGTTTGTATTGGATAACTCGGTGTTGACTTTTTTTTT  1000

seq1  TTTAATA-TTTCCCACAACAGGGGCTTAACCATCCAT-GATCTGTTTATA  1046
      ||||||| ||||| |||||| ||||||| |||||||| ||||||||||||
seq2  TTTAATATTTTCCAACAACA-GGGCTTACCCATCCATGGATCTGTTTATA  1049

seq1  ACAACAGCAAAGGAAGGACTGGGTCTAAGCCCTGTACTTTCAAATATTTA  1096
      || |||||||| |||||||||| ||||   ||||||| ||  ||||||||
seq2  AC-ACAGCAAA-GAAGGACTGGTTCTAGCTCCTGTACCTTTCAATATTTA  1097

seq1  GTATGAAAGAAGAAATTTATACCAATGAT  1125
      ||||||| |||| ||||||||||||||||
seq2  GTATGAAGGAAG-AATTTATACCAATGAT  1125


seq1: chr14_110841591_110842658
seq2: B6Ng01-316F10.g_70_1135 (reverse)

seq1  TAAAATTGGTAAATAAAGTA-TATTGTAATCTGCAATTAATCTACTTTTC  49
      ||||| ||||||  |||||| |||||||||||||||| |||||||||| |
seq2  TAAAA-TGGTAATAAAAGTATTATTGTAATCTGCAATAAATCTACTTTGC  49

seq1  CCATGAATCTATTTGATGCATTATTATGTAAGACAGTATGTAAATAGAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATCTATTTGATGCATTATTATGTAAGACAGTATGTAAATAGAAA  99

seq1  GTTGTGGAATTTTTTTGCTTGTATTTTATAAAGCTATCTTTTTTTTAAAT  149
        |||||||  |||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAA--TTTTTGCTTGTATTTTATAAAGCTATCTTTTTTTTAAAT  147

seq1  CTTTCATGTGAACCCTAGACATCACTGTCTGCCCATCACACAATCACTTT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGTGACCCCTAGACATCACTGTCTGCCCATCACACAATCACTTT  197

seq1  ATGAGTCATCTAACACAGCTTTCTATAGCACATCCTCTTCCTTCTGTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCATCTAACACAGCTTTCTATAGCACATCCTCTTCCTTCTGTCTG  247

seq1  TTCTCTGAAATACTGCATTTTAGAAATTCTCTCTGATGCTGTCACTAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAATACTGCATTTTAGAAATTCTCTCTGATGCTGTCACTAGAA  297

seq1  ATTTTACCCAAAGATATCAAATTAGAAGTTCCACTTCTGTCAGCTGCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCCAAAGATATCAAATTAGAAGTTCCACTTCTGTCAGCTGCTTT  347

seq1  TACCCCTCCCCCAGTCATTCAGGAGGTATATTTGACCTGCAGAATGCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTCCCCCAGTCATTCAGGAGGTATATTTGACCTGCAGAATGCCTC  397

seq1  CATCTATGAGTTCTCAAAAGTTATCTCTGATTCTGCCTGTTTTATTATTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGAGTTCTCAAAAGTTATCTCTGATTCTGCCTGTTTTATTATTC  447

seq1  AATACCAGCATTTATGCTGCCCTAACTGCATTATCTATTGATACATCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGCATTTATGCTGCCCTAACTGCATTATCTATTGATACATCATG  497

seq1  ACACAAATTTGTCATTTTTGTTAAAATTAATATAAAAATAAACCATAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTTGTCATTTTTGTTAAAATTAATATAAAAATAAACCATAAGA  547

seq1  GTATCTAAGACCATGCCTATGTGTCTTTTTTCTAATTTATCTTGTAATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAAGACCATGCCTATGTGTCTTTTTTCTAATTTATCTTGTAATTC  597

seq1  CAAGATAATAATTGAAGAAATATAAAATATAAAACATGTCTAAAACTAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAATAATTGAAGAAATATAAAATATAAAACATGTCTAAAACTAGT  647

seq1  TCCATAAAATGGAAATCTCTGTTCAAGTTGTAAGTTGTGTGAAGTTCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAATGGAAATCTCTGTTCAAGTTGTAAGTTGTGTGAAGTTCACA  697

seq1  AAAACCTCCAAACAATGTAGACTACTGACTTTCTCATTTCTTGGAATTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCCAAACAATGTAGACTACTGACTTTCTCATTTCTTGGAATTTA  747

seq1  AGGTTAAAATCTTGCTGAAAATATTCCTTACTTTGGACAGAGGATATTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAATCTTGCTGAAAATATTCCTTACTTTGGACAGAGGATATTGA  797

seq1  GGAATTGAGCTGGTATAGATCTCAAATCTTAAATTCTGAAATCTACCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAGCTGGTATAGATCTCAAATCTTAAATTCTGAAATCTACCTCT  847

seq1  TAGTGCATCAAAAGTTTCCTTGAAAGCTGCCAAGGAAGTAAAGTAATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATCAAAAGTTTCCTTGAAAGCTGCCAAGGAAGTAAAGTAATTAA  897

seq1  TCATCTTACCCACAAGTTTATTCTACAAATCATAACAATGACCATCATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTACCCACAAGTTTATTCTACAAATCATAACAATGACCATCATGC  947

seq1  AAAGGTGTTGCTAAAGGAGTAATAGTGAGACTTTTAATGATAACTAACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTTGCTAAAGGAGTAATAGTGAGACTTTTAATGATAACTAACTC  997

seq1  TTGTCTAATTATAATCTAGGAAGCTTCAGGCCTACTACTAAAAGTCTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAATTATAATCTAGGAAGCTTCAGGCCTACTACTAAAAGTCTTCC  1047

seq1  TTCCATATCTGGAGAATTC  1068
      |||||||||||||||||||
seq2  TTCCATATCTGGAGAATTC  1066


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