BAC Information

Click to search

BAC

Clone NameB6Ng01-317J22
Chromosome14 (Build37)
Map Location 81,515,593 - 81,658,504
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317J22.bB6Ng01-317J22.g
ACCGA107718GA107719
length600863
definitionB6Ng01-317J22.b B6Ng01-317J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,515,593 - 81,516,191)(81,657,648 - 81,658,504)
sequence
gaattcttgtgatcttgtccctgactccaaattctgaggctatggaaatg
ctcatccatattcattgttaatgtacatgttaggattctaacagagattt
tgttttagtcagtgttctaatgctatgaagagacaccatgatcacagcaa
ttcttataaatcaaaacacttctttggggatagtttacagttccagaggt
ctagttcattatcatcatggcagggagcatggtaacacacaggcagacaa
gcagctggaaaagtagcttagagttctacatatgaatctgcaggcagtag
aaatagacaaagaaagacttggcctgactttagattttgaaatgtcaaag
tccttccccagtggcatactttcttcaaacaaagccatactctccaatcc
ttcccaattagtgccacttcctgatgactaagcattcaaatatatgaggt
tatggagactattctttttcattttccttttttctcttattctttctctt
tctctttctctttctctttctctttctctttctctttctctttctctttc
tctttctctttctctttctctttctctttctctttctctttctcctcctc


gaattcttgctcttgctgcccagttttcacttcttacttcacagcaattt
gcactgttccctccgcagccagcacgatcaagtcaatcaactaaacagta
tataaagatttgtctctgccttagtgttctgaggacaatgtgctccttat
gtgttctatgtcttataatagccaacattgatagtgtctatgatcatact
tggaaacacaggaggttatcagaaagccaacaaatgatttttttgaaagt
gggagtggtcaaaaattgacatgtcagttggaagtggaaaggaggcaaag
gagagtggcgggacagtgaggaacaatgggaaggaaggagaccaatgaaa
caataaaacaagttttatttgaaaataccacagtgaaacctaattctcca
ggaattaataaaaataaaatgagatggcattatattttaaaactttgttt
ttctttgctctaaaatttgctttcatgcccaaagtcaagatcccacagaa
ttagcacagctatcatcaccattcagcgcttattcacagaactagcagag
atggatctgtaagtagaaataaatttccaacatgctgagcgatgggatct
gtcatattagtctagatgtcaggtgcctaaactttctcggtgaaatgtat
ttacagagtctttgctaaaaaagttgaaaagaacatacgtgggagatgat
tgttatttaagttggtgaattgtaactattgtgaacttctttttaataaa
aacacccacaccaatttagttagtgtttttttttttttttgttttttttt
tatcgaagaaactattttccaaatttcattttctctaatccaatcattgg
ctggttgcagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_81515593_81516191
seq2: B6Ng01-317J22.b_47_645

seq1  GAATTCTTGTGATCTTGTCCCTGACTCCAAATTCTGAGGCTATGGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGATCTTGTCCCTGACTCCAAATTCTGAGGCTATGGAAATG  50

seq1  CTCATCCATATTCATTGTTAATGTACATGTTAGGATTCTAACAGAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCATATTCATTGTTAATGTACATGTTAGGATTCTAACAGAGATTT  100

seq1  TGTTTTAGTCAGTGTTCTAATGCTATGAAGAGACACCATGATCACAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTCAGTGTTCTAATGCTATGAAGAGACACCATGATCACAGCAA  150

seq1  TTCTTATAAATCAAAACACTTCTTTGGGGATAGTTTACAGTTCCAGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAATCAAAACACTTCTTTGGGGATAGTTTACAGTTCCAGAGGT  200

seq1  CTAGTTCATTATCATCATGGCAGGGAGCATGGTAACACACAGGCAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCATTATCATCATGGCAGGGAGCATGGTAACACACAGGCAGACAA  250

seq1  GCAGCTGGAAAAGTAGCTTAGAGTTCTACATATGAATCTGCAGGCAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGAAAAGTAGCTTAGAGTTCTACATATGAATCTGCAGGCAGTAG  300

seq1  AAATAGACAAAGAAAGACTTGGCCTGACTTTAGATTTTGAAATGTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACAAAGAAAGACTTGGCCTGACTTTAGATTTTGAAATGTCAAAG  350

seq1  TCCTTCCCCAGTGGCATACTTTCTTCAAACAAAGCCATACTCTCCAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCAGTGGCATACTTTCTTCAAACAAAGCCATACTCTCCAATCC  400

seq1  TTCCCAATTAGTGCCACTTCCTGATGACTAAGCATTCAAATATATGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATTAGTGCCACTTCCTGATGACTAAGCATTCAAATATATGAGGT  450

seq1  TATGGAGACTATTCTTTTTCATTTTCCTTTTTTCTCTTATTCTTTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGACTATTCTTTTTCATTTTCCTTTTTTCTCTTATTCTTTCTCTT  500

seq1  TCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTC  550

seq1  TCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCCTCCT  599
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCCTCCT  599


seq1: chr14_81657648_81658504
seq2: B6Ng01-317J22.g_70_932 (reverse)

seq1  TTTCTGCAA-CAAACAATGATTTGATTAGAGAAAATGAAATTTGG-AAAT  48
      ||||||||| ||  |||||||| |||||||||||||||||||||| ||||
seq2  TTTCTGCAACCAGCCAATGATTGGATTAGAGAAAATGAAATTTGGAAAAT  50

seq1  AGTTTCTTCGATAAAAAAAA---ACAAAAAAAAAAAAACACTAACT-AAT  94
      ||||||||||||||||||||   | ||||||||||||||||||||| |||
seq2  AGTTTCTTCGATAAAAAAAAAACAAAAAAAAAAAAAAACACTAACTAAAT  100

seq1  TGGTGTGGGTGTTTTTATTAAAAAGAAGTTCACAATAGTTACAATTCACC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGGTGTTTTTATTAAAAAGAAGTTCACAATAGTTACAATTCACC  150

seq1  AACTTAAATAACAATCATCTCCCACGTATGTTCTTTTCAACTTTTTTAGC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATAACAATCATCTCCCACGTATGTTCTTTTCAACTTTTTTAGC  200

seq1  AAAGACTCTGTAAATACATTTCACCGAGAAAGTTTAGGCACCTGACATCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCTGTAAATACATTTCACCGAGAAAGTTTAGGCACCTGACATCT  250

seq1  AGACTAATATGACAGATCCCATCGCTCAGCATGTTGGAAATTTATTTCTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAATATGACAGATCCCATCGCTCAGCATGTTGGAAATTTATTTCTA  300

seq1  CTTACAGATCCATCTCTGCTAGTTCTGTGAATAAGCGCTGAATGGTGATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGATCCATCTCTGCTAGTTCTGTGAATAAGCGCTGAATGGTGATG  350

seq1  ATAGCTGTGCTAATTCTGTGGGATCTTGACTTTGGGCATGAAAGCAAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTGCTAATTCTGTGGGATCTTGACTTTGGGCATGAAAGCAAATT  400

seq1  TTAGAGCAAAGAAAAACAAAGTTTTAAAATATAATGCCATCTCATTTTAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCAAAGAAAAACAAAGTTTTAAAATATAATGCCATCTCATTTTAT  450

seq1  TTTTATTAATTCCTGGAGAATTAGGTTTCACTGTGGTATTTTCAAATAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAATTCCTGGAGAATTAGGTTTCACTGTGGTATTTTCAAATAAA  500

seq1  ACTTGTTTTATTGTTTCATTGGTCTCCTTCCTTCCCATTGTTCCTCACTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTTATTGTTTCATTGGTCTCCTTCCTTCCCATTGTTCCTCACTG  550

seq1  TCCCGCCACTCTCCTTTGCCTCCTTTCCACTTCCAACTGACATGTCAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCACTCTCCTTTGCCTCCTTTCCACTTCCAACTGACATGTCAATT  600

seq1  TTTGACCACTCCCACTTTCAAAAAAATCATTTGTTGGCTTTCTGATAACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCACTCCCACTTTCAAAAAAATCATTTGTTGGCTTTCTGATAACC  650

seq1  TCCTGTGTTTCCAAGTATGATCATAGACACTATCAATGTTGGCTATTATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTTCCAAGTATGATCATAGACACTATCAATGTTGGCTATTATA  700

seq1  AGACATAGAACACATAAGGAGCACATTGTCCTCAGAACACTAAGGCAGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGAACACATAAGGAGCACATTGTCCTCAGAACACTAAGGCAGAG  750

seq1  ACAAATCTTTATATACTGTTTAGTTGATTGACTTGATCGTGCTGGCTGCG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTTTATATACTGTTTAGTTGATTGACTTGATCGTGCTGGCTGCG  800

seq1  GAGGGAACAGTGCAAATTGCTGTGAAGTAAGAAGTGAAAACTGGGCAGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACAGTGCAAATTGCTGTGAAGTAAGAAGTGAAAACTGGGCAGCA  850

seq1  AGAGCAAGAATTC  857
      |||||||||||||
seq2  AGAGCAAGAATTC  863


| Home | SequenceCutter | Blast | Download |