BAC Information

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BAC

Clone NameB6Ng01-319B01
Chromosome14 (Build37)
Map Location 47,510,868 - 47,618,546
singlet/doubletdoublet
Overlap geneSamd4
Upstream geneLOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1
Downstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319B01.bB6Ng01-319B01.g
ACCGA108793GA108794
length1,1031,123
definitionB6Ng01-319B01.b B6Ng01-319B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,617,444 - 47,618,546)(47,510,868 - 47,511,987)
sequence
gaattcttgcctaagagtcacctagacccaatgctccaggccatgggaat
ctcctccactgtccgagaactgggtctaccaagccatagttggcctctgt
aacatttgctcagttcactgggatccattttcctaaaatggcaaagaaca
aatctataatacccacatgccattgttcacagtactcatataacacacaa
ggaaggactcaaatgtctatcagttgatacacagaatggctgatgtacct
ggaagactattcacccttcctagggaaggaggttctgacactagccacaa
catgcacgagcttctaagacatcatggccagcggattaagctagattaaa
agggatgaataatgaacaattccacttacacgaatcagattcttagagtt
agaaagcaagatggaagttgctggtggctgggacaagaagaagagggctc
accatttaatggatacccagctcttgtttaagatgatggcaaaggagctt
tagaaaagagtagccctgaggggcccctcaacttcatgaatgtgattaat
accaggacagtacttaaaatggttaaaatgggtgaattttatattagtag
tattttatgacaataaaaataaagataaatttactctccttttcacaaaa
cagctattcccccatatctgtcttactagcctaaagctcacagcatttga
aaatcattcttagagatgtgatttctaggtacccctgcctcttggtctct
ctcttctgagtacatttaatatctctgagaaccagctgtccggagcctcg
cctcgagctgggttcggctgccctctcctcagggtcttgttctgaggaac
ctgcttaatcccaacactgagagctgcacagagtgggtcccctgactacc
tgcttcagcttctaggacaaaggtctaggaattaaaaacaaccagaaacc
accctcaccacccgctgtcccagacctggctctcttcccctgatgcctgt
ggcccagttgcagctgagaagctacccagagaaggcatgagaagaagaga
gagggctcagcgcagcacaccactgccttcagaacattttccatgacttc
tgg
gaattcattaggatgagtgaatatacagacagagcttctatgtaatatgc
atctcaggtagggtgttgtcattatctttgggttagtctggaataggcca
gcaagtggtatggctcaacccctgttctgtgaatgatttggagttgccta
ctgtgggtgactgctggcctcagctacgagaacatgttagaatccaccca
atcaaagcaagtacaggaccgacttcacagcagccaagtcggctcgtttg
tgtctgcataaacaggagagggcacactgatgactgggagggctgagaag
tacctgaaacttcccagagtcctgcagagatgtggttctgagaagaacgg
gcagttaccaagaagaggaggcagaaggtggttagtcatctgtcaagtgc
ccgtgtcacttcatttgcctggcaacatggggagcccagaacttcgtgtt
tttcttaatagaatcacctattgagctttcagccccatcctgccctttca
tccctcctaacgattctcctgagtcctggccgaactctttctccactctt
agattaagatgccgaatcaggcatctcttctgagctaattttttgcttct
ctggaagctgcccgaggcaggattctcccaaagaaagcagaactttcaga
actagagtgagtgctctctcttagtatgctgatcaagattcaggttcttt
cctgaagcctgcagccccagagccagtgtggagtgcccagaaactgactt
gctctcggacttcttagctctcagaagccagtccatggattgtgttgcca
ctccaaatagcaacatataatagttttaccattttagtttaccgattaaa
gctcaaatgatcctatggtttctatttggatggtaccaagacatgaacac
acagtaataaactgtggggccagggttcatcagacacacaaactccccaa
ctactcaagagctgagtgcttgccaagaagcggagccctgggtagtaaat
ttatctcaagagctcccactcacttgttgatgaaaaacaaacacaaaatg
ttaatagttacaccatataacagcctgctccgagttattgattctagtga
cagacagaacgggaacttgacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_47617444_47618546
seq2: B6Ng01-319B01.b_48_1150 (reverse)

seq1  CCAGAAGCCATTGGAAAATGTCTTGAAAGGCCAGT-GTGTGCTGCGCTGA  49
      ||||||| || ||||||||||  ||||  | |||| ||||||||||||||
seq2  CCAGAAGTCA-TGGAAAATGTTCTGAA--GGCAGTGGTGTGCTGCGCTGA  47

seq1  GCCCTCTCTCT--CTCTCATTGCCTTCTCTGGGTTAGCTTCTCAGCTGCA  97
      |||||||||||   ||||| ||||||||||||| ||||||||||||||||
seq2  GCCCTCTCTCTTCTTCTCA-TGCCTTCTCTGGG-TAGCTTCTCAGCTGCA  95

seq1  ACT-GGCCACAGGCATCAGGGGAAGAGAGCCAGGTCTGGGACAGCGGGTG  146
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCCACAGGCATCAGGGGAAGAGAGCCAGGTCTGGGACAGCGGGTG  145

seq1  GTGA-GGTGGTTTCTGGTTGTTTTTAATTCCTAGACCTTTGTCCTAGAAG  195
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTGGTTTCTGGTTGTTTTTAATTCCTAGACCTTTGTCCTAGAAG  195

seq1  CTGAAGCAGGTAGTCAGGGGACCCACTCTGTGCAGCTCTCAGTGTTGGGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAGGTAGTCAGGGGACCCACTCTGTGCAGCTCTCAGTGTTGGGA  245

seq1  TTAAGCAGGTTCCTCAGAACAAGACCCTGAGGAGAGGGCAGCCGAACCCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGGTTCCTCAGAACAAGACCCTGAGGAGAGGGCAGCCGAACCCA  295

seq1  GCTCGAGGCGAGGCTCCGGACAGCTGGTTCTCAGAGATATTAAATGTACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGGCGAGGCTCCGGACAGCTGGTTCTCAGAGATATTAAATGTACT  345

seq1  CAGAAGAGAGAGACCAAGAGGCAGGGGTACCTAGAAATCACATCTCTAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGAGAGACCAAGAGGCAGGGGTACCTAGAAATCACATCTCTAAG  395

seq1  AATGATTTTCAAATGCTGTGAGCTTTAGGCTAGTAAGACAGATATGGGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTCAAATGCTGTGAGCTTTAGGCTAGTAAGACAGATATGGGGG  445

seq1  AATAGCTGTTTTGTGAAAAGGAGAGTAAATTTATCTTTATTTTTATTGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGTTTTGTGAAAAGGAGAGTAAATTTATCTTTATTTTTATTGTC  495

seq1  ATAAAATACTACTAATATAAAATTCACCCATTTTAACCATTTTAAGTACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATACTACTAATATAAAATTCACCCATTTTAACCATTTTAAGTACT  545

seq1  GTCCTGGTATTAATCACATTCATGAAGTTGAGGGGCCCCTCAGGGCTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTATTAATCACATTCATGAAGTTGAGGGGCCCCTCAGGGCTACT  595

seq1  CTTTTCTAAAGCTCCTTTGCCATCATCTTAAACAAGAGCTGGGTATCCAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAAGCTCCTTTGCCATCATCTTAAACAAGAGCTGGGTATCCAT  645

seq1  TAAATGGTGAGCCCTCTTCTTCTTGTCCCAGCCACCAGCAACTTCCATCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTGAGCCCTCTTCTTCTTGTCCCAGCCACCAGCAACTTCCATCT  695

seq1  TGCTTTCTAACTCTAAGAATCTGATTCGTGTAAGTGGAATTGTTCATTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTAACTCTAAGAATCTGATTCGTGTAAGTGGAATTGTTCATTAT  745

seq1  TCATCCCTTTTAATCTAGCTTAATCCGCTGGCCATGATGTCTTAGAAGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTTTTAATCTAGCTTAATCCGCTGGCCATGATGTCTTAGAAGCT  795

seq1  CGTGCATGTTGTGGCTAGTGTCAGAACCTCCTTCCCTAGGAAGGGTGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATGTTGTGGCTAGTGTCAGAACCTCCTTCCCTAGGAAGGGTGAAT  845

seq1  AGTCTTCCAGGTACATCAGCCATTCTGTGTATCAACTGATAGACATTTGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCAGGTACATCAGCCATTCTGTGTATCAACTGATAGACATTTGA  895

seq1  GTCCTTCCTTGTGTGTTATATGAGTACTGTGAACAATGGCATGTGGGTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCTTGTGTGTTATATGAGTACTGTGAACAATGGCATGTGGGTAT  945

seq1  TATAGATTTGTTCTTTGCCATTTTAGGAAAATGGATCCCAGTGAACTGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTTGTTCTTTGCCATTTTAGGAAAATGGATCCCAGTGAACTGAG  995

seq1  CAAATGTTACAGAGGCCAACTATGGCTTGGTAGACCCAGTTCTCGGACAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTACAGAGGCCAACTATGGCTTGGTAGACCCAGTTCTCGGACAG  1045

seq1  TGGAGGAGATTCCCATGGCCTGGAGCATTGGGTCTAGGTGACTCTTAGGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGATTCCCATGGCCTGGAGCATTGGGTCTAGGTGACTCTTAGGC  1095

seq1  AAGAATTC  1103
      ||||||||
seq2  AAGAATTC  1103

seq1: chr14_47510868_47511987
seq2: B6Ng01-319B01.g_69_1191

seq1  GAATTCATTAGGATGAGTGAATATACAGACAGAGCTTCTATGTAATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGATGAGTGAATATACAGACAGAGCTTCTATGTAATATGC  50

seq1  ATCTCAGGTAGGGTGTTGTCATTATCTTTGGGTTAGTCTGGAATAGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTAGGGTGTTGTCATTATCTTTGGGTTAGTCTGGAATAGGCCA  100

seq1  GCAAGTGGTATGGCTCAACCCCTGTTCTGTGAATGATTTGGAGTTGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGTATGGCTCAACCCCTGTTCTGTGAATGATTTGGAGTTGCCTA  150

seq1  CTGTGGGTGACTGCTGGCCTCAGCTACGAGAACATGTTAGAATCCACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGACTGCTGGCCTCAGCTACGAGAACATGTTAGAATCCACCCA  200

seq1  ATCAAAGCAAGTACAGGACCGACTTCACAGCAGCCAAGTCGGCTCGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCAAGTACAGGACCGACTTCACAGCAGCCAAGTCGGCTCGTTTG  250

seq1  TGTCTGCATAAACAGGAGAGGGCACACTGATGACTGGGAGGGCTGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCATAAACAGGAGAGGGCACACTGATGACTGGGAGGGCTGAGAAG  300

seq1  TACCTGAAACTTCCCAGAGTCCTGCAGAGATGTGGTTCTGAGAAGAACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAAACTTCCCAGAGTCCTGCAGAGATGTGGTTCTGAGAAGAACGG  350

seq1  GCAGTTACCAAGAAGAGGAGGCAGAAGGTGGTTAGTCATCTGTCAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTACCAAGAAGAGGAGGCAGAAGGTGGTTAGTCATCTGTCAAGTGC  400

seq1  CCGTGTCACTTCATTTGCCTGGCAACATGGGGAGCCCAGAACTTCGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCACTTCATTTGCCTGGCAACATGGGGAGCCCAGAACTTCGTGTT  450

seq1  TTTCTTAATAGAATCACCTATTGAGCTTTCAGCCCCATCCTGCCCTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATAGAATCACCTATTGAGCTTTCAGCCCCATCCTGCCCTTTCA  500

seq1  TCCCTCCTAACGATTCTCCTGAGTCCTGGCCGAACTCTTTCTCCACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTAACGATTCTCCTGAGTCCTGGCCGAACTCTTTCTCCACTCTT  550

seq1  AGATTAAGATGCCGAATCAGGCATCTCTTCTGAGCTAATTTTTTGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGATGCCGAATCAGGCATCTCTTCTGAGCTAATTTTTTGCTTCT  600

seq1  CTGGAAGCTGCCCGAGGCAGGATTCTCCCAAAGAAAGCAGAACTTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCTGCCCGAGGCAGGATTCTCCCAAAGAAAGCAGAACTTTCAGA  650

seq1  ACTAGAGTGAGTGCTCTCTCTTAGTATGCTGATCAAGATTCAGGTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGTGAGTGCTCTCTCTTAGTATGCTGATCAAGATTCAGGTTCTTT  700

seq1  CCTGAAGCCTGCAGCCCCAGAGCCAGTGTGGAGTGCCCAGAAACTGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCCTGCAGCCCCAGAGCCAGTGTGGAGTGCCCAGAAACTGACTT  750

seq1  GCTCTCGGACTTCTTAGCTCTCAGAAGCCAGTCCATGGATTGTGTTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCGGACTTCTTAGCTCTCAGAAGCCAGTCCATGGATTGTGTTGCCA  800

seq1  CTCCAAATAGCAACATATAATAGTTTTACCATTTTAGTTTACCGATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATAGCAACATATAATAGTTTTACCATTTTAGTTTACCGATTAAA  850

seq1  GCTCAAATGATCCTATGGTTTCTATTTGGATGGTACCAAGACATGAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATGATCCTATGGTTTCTATTTGGATGGTACCAAGACATGAACAC  900

seq1  ACAGTAATAAACTGTGGGGCCAGGGTTCATCAGGACACACAAACTCCCCA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACAGTAATAAACTGTGGGGCCAGGGTTCATCA-GACACACAAACTCCCCA  949

seq1  ACTACTCAAGAGCTGAGTGCTTTGCCAAGAAGCGGAGCCCT-GGTAGT-A  998
      |||||||||||||||||||| |||||||||||||||||||| |||||| |
seq2  ACTACTCAAGAGCTGAGTGC-TTGCCAAGAAGCGGAGCCCTGGGTAGTAA  998

seq1  ATTTATCTCAAGGAGCTCCCACTCAACTTGTGGATGGAAAACAAACAC-A  1047
      ||||||||||| |||||||||||| |||||| |||| ||||||||||| |
seq2  ATTTATCTCAA-GAGCTCCCACTC-ACTTGTTGATGAAAAACAAACACAA  1046

seq1  AATG-TAATAGTTACACCATAT-ACAG-CTGCTCCGAGTTA-TGATTCTA  1093
      |||| ||||||||||||||||| |||| ||||||||||||| ||||||||
seq2  AATGTTAATAGTTACACCATATAACAGCCTGCTCCGAGTTATTGATTCTA  1096

seq1  GTGACAGAACCAG-ACGGG-ACTTGACCA  1120
      ||||||||  ||| ||||| |||||||||
seq2  GTGACAGA--CAGAACGGGAACTTGACCA  1123