BAC Information

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BAC

Clone NameB6Ng01-319O05
Chromosome14 (Build37)
Map Location 104,688,649 - 104,797,821
singlet/doubletdoublet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319O05.bB6Ng01-319O05.g
ACCGA109407GA109408
length1,0921,046
definitionB6Ng01-319O05.b B6Ng01-319O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,688,649 - 104,689,749)(104,796,775 - 104,797,821)
sequence
gaattcatccttttgatcttcctctcctaaagtgatcagcccaaatccct
tagcactaaccaaattctctcaagcataatttaaaacaaacaaacacgaa
ttctccaaccctgcatgcctttaacagaatagttggtcagtcctcagtgt
gtgctgacccttgttctagccattgcggatggtagagctcttgagtctgt
tgtgaagaagttaggtgatgtcattgttcaagtaggaaatgtagcgtcaa
cgctcatgtagatccccagctgatgttaccaatggaaagactatggaggc
tttaggattcgaggcctatgttgaaaactggagttgctcacaggagatat
aagttaggaaccataggcaggttctgtgttaaccttttcctcacagtctc
tctctgtctctttacatttctgtctctctctcttctgtctctgtctttct
ccctctctgtctgtttacatctctgcttctctccatttttgtctctccct
gatcccagccctgggaaataaattttcttccttaaattgcttctttcagc
tgtttgtatcaaaaccagaaaggcaactaatacagataataatagattta
tattatcatattcatggcagttattttattataaaaattaattaattatt
agaaaagaaagtgtcaattttgggcctattcaaatacattttcctcattt
gaaattctcctccccccgcccccaaaaaaaaacctttaaattctcaaatt
catacttacactagtcttagcagaaatcatctttattttgtcaatcaatt
ataatacatgtgttctgctgaattctcatcttgtttatactctgctgact
atattggagttgaaagaaaaataaaaggtcattgactgcttaaactgttc
cacatgccattacatccaatcttagctatgcctctcaagcttcctttaca
gtacatgggatcttagatggcttcttcatgatgagtcatggccatgatga
tagtcttatagttctttccttctactgtaacttaaaagaaaaaaagattg
gatgtgattttttttttcattgatcgtgatgcagtaggattt

gaattcatgacagctaaaggcacgcctttgtttaatgagacaataaaccc
cttatgaaattgccttagaactttaaagaaaggctatagacaattgtttg
aatggctcctaaatccaagtatgccttttccatttcttaataattattga
gatagaacattgtgtggttatctcagtgaccaacttatgtagattacttc
aagaaaatgagcaaaagacttttaaaaggcacacattgcaggcctttaaa
tgcaagatgacgagatagagccaggcatggtggtgctggcctgtgatcct
aggactcaagctgctgaggcagagggattgctgcaagcttaaggacaacc
tgggccacataccaaggctctgcctcacacaatgaactaaaaagcagagt
ggaaataaagtgattcaaggttttcagatgtgacctcaaaacagacctca
gtgttccctacttgtaaaaatgttaaaatgacttctagatctattctcca
aaaacaatgtgaatttaagttgcccatggatgcagggatgttgtgatgtg
aagttttcagtgaactgggcatgtcagtttacctttcactgtagactttg
ttgaattgcttgtttggttatggtttgagatgttaaacatttttcgtctg
atagatctattttctatggtctcaacattgccctccacttccttacaaaa
tattctatttagtttctctcttagactttcttgcctgtaggcctttaaaa
acatttgaccatagtcttccccttgtttctttttttttttcttcccattt
taaccctgaactttcgcaccatctcctattattcaattaggtaaaatcca
ttttttgattcatttatataactctaaacgagttagcttgaagttttgct
tttcttaacaaagcagctttggtatagtgataaatctccattgtggggga
gtagcatgaacatatctctatcagatacatgaagaaatatggatcagaat
ctgatagtggagaacatgagagtagcactgcttggtataatacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104688649_104689749
seq2: B6Ng01-319O05.b_50_1141

seq1  GAATTCATCCTTTTGATCTTCCTCTCCTAAAGTGATCAGCCCAAATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTTTTGATCTTCCTCTCCTAAAGTGATCAGCCCAAATCCCT  50

seq1  TAGCACTAACCAAATTCTCTCAAGCATAATTTAAAACAAACAAACACGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTAACCAAATTCTCTCAAGCATAATTTAAAACAAACAAACACGAA  100

seq1  TTCTCCAACCCTGCATGCCTTTAACAGAATAGTTGGTCAGTCCTCAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAACCCTGCATGCCTTTAACAGAATAGTTGGTCAGTCCTCAGTGT  150

seq1  GTGCTGACCCTTGTTCTAGCCATTGCGGATGGTAGAGCTCTTGAGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACCCTTGTTCTAGCCATTGCGGATGGTAGAGCTCTTGAGTCTGT  200

seq1  TGTGAAGAAGTTAGGTGATGTCATTGTTCAAGTAGGAAATGTAGCGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGAAGTTAGGTGATGTCATTGTTCAAGTAGGAAATGTAGCGTCAA  250

seq1  CGCTCATGTAGATCCCCAGCTGATGTTACCAATGGAAAGACTATGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCATGTAGATCCCCAGCTGATGTTACCAATGGAAAGACTATGGAGGC  300

seq1  TTTAGGATTCGAGGCCTATGTTGAAAACTGGAGTTGCTCACAGGAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATTCGAGGCCTATGTTGAAAACTGGAGTTGCTCACAGGAGATAT  350

seq1  AAGTTAGGAACCATAGGCAGGTTCTGTGTTAACCTTTTCCTCACAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGAACCATAGGCAGGTTCTGTGTTAACCTTTTCCTCACAGTCTC  400

seq1  TCTCTGTCTCTTTACATTTCTGTCTCTCTCTCTTCTGTCTCTGTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTTTACATTTCTGTCTCTCTCTCTTCTGTCTCTGTCTTTCT  450

seq1  CCCTCTCTGTCTGTTTACATCTCTGCTTCTCTCCATTTTTGTCTCTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTGTCTGTTTACATCTCTGCTTCTCTCCATTTTTGTCTCTCCCT  500

seq1  GATCCCAGCCCTGGGAAATAAATTTTCTTCCTTAAATTGCTTCTTTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGCCCTGGGAAATAAATTTTCTTCCTTAAATTGCTTCTTTCAGC  550

seq1  TGTTTGTATCAAAACCAGAAAGGCAACTAATACAGATAATAATAGATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATCAAAACCAGAAAGGCAACTAATACAGATAATAATAGATTTA  600

seq1  TATTATCATATTCATGGCAGTTATTTTATTATAAAAATTAATTAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCATATTCATGGCAGTTATTTTATTATAAAAATTAATTAATTATT  650

seq1  AGAAAAGAAAGTGTCAATTTTGGGCCTATTCAAATACATTTTCCTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAGTGTCAATTTTGGGCCTATTCAAATACATTTTCCTCATTT  700

seq1  GAAATTCTCCTCCCCCCGCCCCCAAAAAAAAACCTTTAAATTCTCAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTCCTCCCCCCGCCCCCAAAAAAAAACCTTTAAATTCTCAAATT  750

seq1  CATACTTACACTAGTCTTAGCAGAAATCATCTTTATTTTGTCAATCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTACACTAGTCTTAGCAGAAATCATCTTTATTTTGTCAATCAATT  800

seq1  ATAATACATGTGTTCTGCTGAATTCTCATCTTGTTTATACTCTGCTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACATGTGTTCTGCTGAATTCTCATCTTGTTTATACTCTGCTGACT  850

seq1  ATATTGGAGTTGAAAGAAAAATAAAAGGTCATTGACTGCTTAAACTGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAGTTGAAAGAAAAATAAAAGGTCATTGACTGCTTAAACTGTTC  900

seq1  CACATGCCATTACATCCAATCTTAGCTATGCCTCTCAAGGCTTCCTTTAC  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACATGCCATTACATCCAATCTTAGCTATGCCTCTCAA-GCTTCCTTTAC  949

seq1  AGTACATGGGATCTTAGATGGCTTCTTCAATGATGGAGGTCCATGGCCAA  1000
      |||||||||||||||||||||||||||| ||||| |||   ||||||| |
seq2  AGTACATGGGATCTTAGATGGCTTCTTC-ATGAT-GAG--TCATGGCC-A  994

seq1  TGAATGATAGTC-TATAGTTCTTT-CTTCTACTGTAACTTAAAAAAGAAA  1048
      || ||||||||| ||||||||||| |||||||||||||||  ||||||||
seq2  TG-ATGATAGTCTTATAGTTCTTTCCTTCTACTGTAACTT--AAAAGAAA  1041

seq1  AAAAGATTTGATGTGATTTTTTTTTTCCATTGATCGTGATGAAAGTAGGA  1098
      |||||||| ||||||||||||||||| ||||||||||||||  |||||||
seq2  AAAAGATTGGATGTGATTTTTTTTTT-CATTGATCGTGATG-CAGTAGGA  1089

seq1  TTT  1101
      |||
seq2  TTT  1092


seq1: chr14_104796775_104797821
seq2: B6Ng01-319O05.g_70_1115 (reverse)

seq1  TGTGTATTATACCAGCAAGTGCTACTCTTCATG-TCTCCACTATCAGATT  49
      ||||||||||||||   |||||||||| ||||| ||||||||||||||||
seq2  TGTGTATTATACCAAGCAGTGCTACTC-TCATGTTCTCCACTATCAGATT  49

seq1  CTGATCCATTATTTCTTCATTGTATTCTGATAGAGATATGTTCATGCTAC  99
      |||||||| |||||||||| |||| |||||||||||||||||||||||||
seq2  CTGATCCA-TATTTCTTCA-TGTA-TCTGATAGAGATATGTTCATGCTAC  96

seq1  T-CCCCACAATGGAGATTTATCACTATACCAAAGCTGCTTTTGTTAAG-A  147
      | |||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  TCCCCCACAATGGAGATTTATCACTATACCAAAGCTGC-TTTGTTAAGAA  145

seq1  AAGCAAAACTTCAAGCTAACTCGTTTAGAGTTATATAAATGAATCAAAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACTTCAAGCTAACTCGTTTAGAGTTATATAAATGAATCAAAAA  195

seq1  ATGGATTTTACCTAATTGAATAATAGGAGATGGTGCGAAAGTTCAGGGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTTACCTAATTGAATAATAGGAGATGGTGCGAAAGTTCAGGGTT  245

seq1  AAAATGGGAAG-AAAAAAAAAAGAAACAAGGGGAAGACTATGGTCAAATG  296
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAAGAAAAAAAAAAAGAAACAAGGGGAAGACTATGGTCAAATG  295

seq1  TTTTTAAAGGCCTACAGGCAAGAAAGTCTAAGAGAGAAACTAAATAGAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGCCTACAGGCAAGAAAGTCTAAGAGAGAAACTAAATAGAAT  345

seq1  ATTTTGTAAGGAAGTGGAGGGCAATGTTGAGACCATAGAAAATAGATCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAAGGAAGTGGAGGGCAATGTTGAGACCATAGAAAATAGATCTA  395

seq1  TCAGACGAAAAATGTTTAACATCTCAAACCATAACCAAACAAGCAATTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGAAAAATGTTTAACATCTCAAACCATAACCAAACAAGCAATTCA  445

seq1  ACAAAGTCTACAGTGAAAGGTAAACTGACATGCCCAGTTCACTGAAAACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCTACAGTGAAAGGTAAACTGACATGCCCAGTTCACTGAAAACT  495

seq1  TCACATCACAACATCCCTGCATCCATGGGCAACTTAAATTCACATTGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCACAACATCCCTGCATCCATGGGCAACTTAAATTCACATTGTTT  545

seq1  TTGGAGAATAGATCTAGAAGTCATTTTAACATTTTTACAAGTAGGGAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATAGATCTAGAAGTCATTTTAACATTTTTACAAGTAGGGAACA  595

seq1  CTGAGGTCTGTTTTGAGGTCACATCTGAAAACCTTGAATCACTTTATTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCTGTTTTGAGGTCACATCTGAAAACCTTGAATCACTTTATTTC  645

seq1  CACTCTGCTTTTTAGTTCATTGTGTGAGGCAGAGCCTTGGTATGTGGCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCTTTTTAGTTCATTGTGTGAGGCAGAGCCTTGGTATGTGGCCC  695

seq1  AGGTTGTCCTTAAGCTTGCAGCAATCCCTCTGCCTCAGCAGCTTGAGTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCCTTAAGCTTGCAGCAATCCCTCTGCCTCAGCAGCTTGAGTCC  745

seq1  TAGGATCACAGGCCAGCACCACCATGCCTGGCTCTATCTCGTCATCTTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCACAGGCCAGCACCACCATGCCTGGCTCTATCTCGTCATCTTGC  795

seq1  ATTTAAAGGCCTGCAATGTGTGCCTTTTAAAAGTCTTTTGCTCATTTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGCCTGCAATGTGTGCCTTTTAAAAGTCTTTTGCTCATTTTCT  845

seq1  TGAAGTAATCTACATAAGTTGGTCACTGAGATAACCACACAATGTTCTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAATCTACATAAGTTGGTCACTGAGATAACCACACAATGTTCTAT  895

seq1  CTCAATAATTATTAAGAAATGGAAAAGGCATACTTGGATTTAGGAGCCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAATTATTAAGAAATGGAAAAGGCATACTTGGATTTAGGAGCCAT  945

seq1  TCAAACAATTGTCTATAGCCTTTCTTTAAAGTTCTAAGGCAATTTCATAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAATTGTCTATAGCCTTTCTTTAAAGTTCTAAGGCAATTTCATAA  995

seq1  GGGGTTTATTGTCTCATTAAACAAAGGCGTGCCTTTAGCTGTCATGAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTATTGTCTCATTAAACAAAGGCGTGCCTTTAGCTGTCATGAATT  1045

seq1  C  1047
      |
seq2  C  1046


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