BAC Information

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BAC

Clone NameB6Ng01-321C07
Chromosome14 (Build37)
Map Location 104,448,491 - 104,623,510
singlet/doubletdoublet
Overlap genenone
Upstream geneIrg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321C07.bB6Ng01-321C07.g
ACCGA110331GA110332
length1,143582
definitionB6Ng01-321C07.b B6Ng01-321C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,448,491 - 104,449,520)(104,622,929 - 104,623,510)
sequence
gaattcattgttaacaactgggatcaacaagaactccacctaagattcac
ttaatcttagaagccaggctcaagggctttgtgcccttgccataattcct
attttagtttattgtatagtccacctttcccctaggccattgtaaatacg
tgtgtatgggtgtaactcagctatctatagttctaagtatctactctggt
tcctccttaggtctcaaacttccttcttcctagatgatggtaaattcctg
tgtagggcagtgacttagcttttattcaaagtgatagtgtaataccagag
gcaattctgaatgtcactgaataggcaacattcttactgaattccaagcc
catggtctgctcaaggactttctaggacattggaacactggtgaaggctt
ggctatgtcagaattcaatctttaaaggcacttataataggataatacta
aaaaagagcacatagatccatacaccagactaactcgggagtggaatatt
aatgtatgggttagagaggacgccagactccaggaggtaagtttctgtga
aactcttttgcctcctgagtagcttctaagcctctcggcctgtcaagcag
actcgaccagagtgcatggcacttgctattaagaatcaacagccaggata
tcctagtattagtgaaggattcaagaattcaattttgtaacaagttctca
gatgatgttggtctgagacagagccactttctgtataaagaaggtgatag
gagtaaaaaattgaactttcctttgttccccttcatgtgcacacaatgaa
gtctactctcttagcaaagaagcctctcattgcagtgaacagaatgcaaa
gcctcatggctgcccacactattgaaaataagattcagccgagggcccag
ctctaatcaagatctttacatcacttcctcaaggctcagagaacattgcg
ggagagtggcagaaagaatgtaagagctggcagttaaagagactcgctga
aaagcatcatctaaccatgtacaaccatgggacatgaactcacagccgct
gtgcctactgactgctatagacacccaaatggtcacacaaaaaattgggt
gggggaaggtctcagaaaggcgattacttactgctggctatct

gaattcttccctggatatggtgaggctccattgcatcctttcctgctacc
ttccagccggccattgcttccctcatttttccaactgtgcacaatcactg
ttgctctacgtcatttccactttgagcgctcatccttgcccatggcatgg
gggatatccagttttcaatcctgatagacttagaagtgagattcttcatt
gcaataaaccttgcacatttcctcacttgttccgagtttctgtcttctta
gcaacacaggagggaagttgagctctgtgctctcatctcagatctctaac
tttcaagtttattccttgaggcgatcagcgttgttctgttcccaaatgag
tttcagaatgaggcaatgtgctctgctctggccggaatcttccagagtgc
ttcggaaactcaataggcattgagaatattgggcatatcttaaatgtata
gatacttattttgaatgctcaactggtcatttatcaaaaccagaaacaat
catattttccaaacacagcaatagatgaaatataattttacaaaaaaaat
ataagaaagagggagggagggagggagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104448491_104449520
seq2: B6Ng01-321C07.b_167_1186

seq1  CCTTTCCCCTAGGCCATTGTAAATACGTGTGTATGGGTGTAACTCAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCTAGGCCATTGTAAATACGTGTGTATGGGTGTAACTCAGCTA  50

seq1  TCTATAGTTCTAAGTATCTACTCTGGTTCCTCCTTAGGTCTCAAACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTTCTAAGTATCTACTCTGGTTCCTCCTTAGGTCTCAAACTTCC  100

seq1  TTCTTCCTAGATGATGGTAAATTCCTGTGTAGGGCAGTGACTTAGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTAGATGATGGTAAATTCCTGTGTAGGGCAGTGACTTAGCTTTT  150

seq1  ATTCAAAGTGATAGTGTAATACCAGAGGCAATTCTGAATGTCACTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGTGATAGTGTAATACCAGAGGCAATTCTGAATGTCACTGAATA  200

seq1  GGCAACATTCTTACTGAATTCCAAGCCCATGGTCTGCTCAAGGACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATTCTTACTGAATTCCAAGCCCATGGTCTGCTCAAGGACTTTCT  250

seq1  AGGACATTGGAACACTGGTGAAGGCTTGGCTATGTCAGAATTCAATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTGGAACACTGGTGAAGGCTTGGCTATGTCAGAATTCAATCTTT  300

seq1  AAAGGCACTTATAATAGGATAATACTAAAAAAGAGCACATAGATCCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTTATAATAGGATAATACTAAAAAAGAGCACATAGATCCATAC  350

seq1  ACCAGACTAACTCGGGAGTGGAATATTAATGTATGGGTTAGAGAGGACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTAACTCGGGAGTGGAATATTAATGTATGGGTTAGAGAGGACGC  400

seq1  CAGACTCCAGGAGGTAAGTTTCTGTGAAACTCTTTTGCCTCCTGAGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCAGGAGGTAAGTTTCTGTGAAACTCTTTTGCCTCCTGAGTAGC  450

seq1  TTCTAAGCCTCTCGGCCTGTCAAGCAGACTCGACCAGAGTGCATGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCCTCTCGGCCTGTCAAGCAGACTCGACCAGAGTGCATGGCACT  500

seq1  TGCTATTAAGAATCAACAGCCAGGATATCCTAGTATTAGTGAAGGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAAGAATCAACAGCCAGGATATCCTAGTATTAGTGAAGGATTCA  550

seq1  AGAATTCAATTTTGTAACAAGTTCTCAGATGATGTTGGTCTGAGACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAATTTTGTAACAAGTTCTCAGATGATGTTGGTCTGAGACAGAG  600

seq1  CCACTTTCTGTATAAAGAAGGTGATAGGAGTAAAAAATTGAACTTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCTGTATAAAGAAGGTGATAGGAGTAAAAAATTGAACTTTCCTT  650

seq1  TGTTCCCCTTCATGTGCACACAATGAAGTCTACTCTCTTAGCAAAGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCTTCATGTGCACACAATGAAGTCTACTCTCTTAGCAAAGAAGC  700

seq1  CTCTCATTGCAGTGAACAGAATGCAAAGCCTCATGGCTGCCCACACTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTGCAGTGAACAGAATGCAAAGCCTCATGGCTGCCCACACTATT  750

seq1  GAAAATAAGATTCAGCCGAGGGCCCAGCTCTAATCAAGATCTTTACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGATTCAGCCGAGGGCCCAGCTCTAATCAAGATCTTTACATCA  800

seq1  CTTCCTCAAGGCTCAGAGAACATTGCGGAAGAGGTGGCAGAAAGAATGTA  850
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  CTTCCTCAAGGCTCAGAGAACATTGCGGGAGA-GTGGCAGAAAGAATGTA  849

seq1  AGAGCTGGCAGTTAAAGAGACCGGCTGAAAAGCATCATCTAACCATGGTA  900
      |||||||||||||||||||||  ||||||||||||||||||||||| |||
seq2  AGAGCTGGCAGTTAAAGAGACTCGCTGAAAAGCATCATCTAACCAT-GTA  898

seq1  CAACCATGGGAACCATGAACTCACAGCCGCTGTGCCTACTGACTGGCTAT  950
      |||||||||||  ||||||||||||||||||||||||||||||| |||||
seq2  CAACCATGGGA--CATGAACTCACAGCCGCTGTGCCTACTGACT-GCTAT  945

seq1  AGGACCACCCAAATTGGGCCCACACAAAAATATGGGTGGGGAAGGGGCTC  1000
      ||   |||||||||   |  ||||||||||  ||||||||| | || |||
seq2  AG--ACACCCAAAT---GGTCACACAAAAAATTGGGTGGGGGAAGGTCTC  990

seq1  AGAGAAGCCAATTACTTACTGCT-GCTATCT  1030
      ||| ||| | ||||||||||||| |||||||
seq2  AGA-AAGGCGATTACTTACTGCTGGCTATCT  1020


seq1: chr14_104622929_104623510
seq2: B6Ng01-321C07.g_67_648 (reverse)

seq1  TCTCTCTCCCTCCCTCCCTCCCTCTTTCTTATATTTTTTTTGTAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTCCCTCCCTCCCTCTTTCTTATATTTTTTTTGTAAAATTA  50

seq1  TATTTCATCTATTGCTGTGTTTGGAAAATATGATTGTTTCTGGTTTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATCTATTGCTGTGTTTGGAAAATATGATTGTTTCTGGTTTTGAT  100

seq1  AAATGACCAGTTGAGCATTCAAAATAAGTATCTATACATTTAAGATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCAGTTGAGCATTCAAAATAAGTATCTATACATTTAAGATATGC  150

seq1  CCAATATTCTCAATGCCTATTGAGTTTCCGAAGCACTCTGGAAGATTCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTCTCAATGCCTATTGAGTTTCCGAAGCACTCTGGAAGATTCCG  200

seq1  GCCAGAGCAGAGCACATTGCCTCATTCTGAAACTCATTTGGGAACAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCAGAGCACATTGCCTCATTCTGAAACTCATTTGGGAACAGAAC  250

seq1  AACGCTGATCGCCTCAAGGAATAAACTTGAAAGTTAGAGATCTGAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGATCGCCTCAAGGAATAAACTTGAAAGTTAGAGATCTGAGATGA  300

seq1  GAGCACAGAGCTCAACTTCCCTCCTGTGTTGCTAAGAAGACAGAAACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGAGCTCAACTTCCCTCCTGTGTTGCTAAGAAGACAGAAACTCG  350

seq1  GAACAAGTGAGGAAATGTGCAAGGTTTATTGCAATGAAGAATCTCACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTGAGGAAATGTGCAAGGTTTATTGCAATGAAGAATCTCACTTC  400

seq1  TAAGTCTATCAGGATTGAAAACTGGATATCCCCCATGCCATGGGCAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTATCAGGATTGAAAACTGGATATCCCCCATGCCATGGGCAAGGA  450

seq1  TGAGCGCTCAAAGTGGAAATGACGTAGAGCAACAGTGATTGTGCACAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGCTCAAAGTGGAAATGACGTAGAGCAACAGTGATTGTGCACAGTT  500

seq1  GGAAAAATGAGGGAAGCAATGGCCGGCTGGAAGGTAGCAGGAAAGGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATGAGGGAAGCAATGGCCGGCTGGAAGGTAGCAGGAAAGGATGC  550

seq1  AATGGAGCCTCACCATATCCAGGGAAGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  AATGGAGCCTCACCATATCCAGGGAAGAATTC  582


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