BAC Information

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BAC

Clone NameB6Ng01-321J01
Chromosome14 (Build37)
Map Location 103,653,011 - 103,777,374
singlet/doubletdoublet
Overlap genePhr1, LOC100043797
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441
Downstream geneScel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J01.bB6Ng01-321J01.g
ACCGA110634GA110635
length1,160658
definitionB6Ng01-321J01.b B6Ng01-321J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,776,201 - 103,777,374)(103,653,011 - 103,653,666)
sequence
gaattcacagcacctgcactgtatccaaacattgagaagtaagaaaacct
atgctctcctgttatttttagttctgatcccaccaacgagaatttgtcat
ttacatttttttaactttttaaaattttatttctcattaccagaaaagtt
aaatgtcttcaatgagttgtgtacttctcttgctatgaattgcttttgtg
ttctcgttgctggttccgtttatgttcataattatttagttactctttgg
gtttttcagagttattattatttcttttagttttattttacatttgagat
tattgtttttccctttccttcctctgaaccctccttgttcttcttctaat
ttaaggactcttttttcattaattgttgtgatatgtatgtatatgtatca
gatacatcgcacatacatatatgtatgtatatatgcatgatatatgtgtg
ttacttgttcagtctacatagtgttacttgattttctcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
cctcttcttcctcttcctcctcctccttcctccttcctccttcctccttc
ctcttcttttagttctgatcccaccaaatagaagttatcatttacatttt
ttttccattttcacgttgccagacacatctgtacctctgataggaggtaa
atcttcttgtttcaagtggaatactagaaggcgaaaattcagtgcttaag
tgattaaaaggaaaaagaagcgtgagagaatttaacaaggaaataaacat
taaacgagaagacctgctataactatttcccccaaacagaaacactggct
gaaggctgtgctccattcatttgttttaaaaactcactgcatgcctacta
catgcaacacagtgattacaaagggatacaacatagtctttacccacaaa
aacccaaataataagtgtgagaccaaaacagaaaaaaatatgcctgcaag
ttaaaggttctgtttgcagttagaacagttagagtgagttctgttgtctt
tgcaagtaaagtttctgtttgtagttaagatagtgtctgtttgtctgtgt
tggatctgcaatagtttaagagtacgtctgttgtcctgtgcctaagcctt
gcaagttaag

gaattcccagagggacaaacaagatgcttgccaacactctaggaaggcag
ggaggcagaaaagtcagccactgggagcaagcaaaacactgaagtgctca
gtgtggctggagaagaaagaggcacagtcccttcacgcagaccaggaata
aagggacaaacaaaggagaacaaacagctaaaaacaaaactgagctgcag
gacaggtgcactccatttaagatggcaaatctgaggaagggtgaacacat
taaaaagccgggcgtggtggcacacgcctttaatcccagcattcgggagg
cagaggcaggtggatttctgagttcaaggccagcctggtctacaaactga
gttccaggacagccaaggctacacagagaaaccctgtcttgaaaccacct
ccgcacccccccatcccccccaaaaaaatagacagacagacttcagaggt
cagacggagctaagaacagcactgcatagatcctgcagacatgctgaggc
aggaggctcagggaatggtgaaggcacatctcacaggggtaggaggggat
aataggagttgaaaatatggttataaggttagtggacgaaaaactatcct
gcttcataagttctttatttttgttgtgatgtgttatggcagatcctgtg
ctgaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103776201_103777374
seq2: B6Ng01-321J01.b_48_1207 (reverse)

seq1  CTTAACTTGCAAAGACTTA-GCACAGGACAAACAGGAACGTACTCTTTAA  49
      |||||||||| ||| |||| ||||||||| |||||  |||||||||| ||
seq2  CTTAACTTGC-AAGGCTTAGGCACAGGAC-AACAG--ACGTACTCTTAAA  46

seq1  CTATTGCAAGAATTCAACACAGGACAAACAGACACTTATTCTTTAACTAC  99
      ||||||||   || ||||||| ||||||||||||| |||   ||||||||
seq2  CTATTGCA--GATCCAACACA-GACAAACAGACAC-TAT--CTTAACTAC  90

seq1  AAACAGAAACTTTAACCTGCAAAGACCAAACAGGAACTCACTCTTAACTG  149
      ||||||||||||| || |||||||||  |||| |||||||||| ||||||
seq2  AAACAGAAACTTT-ACTTGCAAAGAC--AACA-GAACTCACTC-TAACTG  135

seq1  TCTTAACTGCAAACAGAACCTTTAACTTGCAAGGCATA-TTTTTTCTGTT  198
      |  ||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TTCTAACTGCAAACAGAACCTTTAACTTGC-AGGCATATTTTTTTCTGTT  184

seq1  TTGGTCTCACACTTATTATTTGGGTTTTTGTGGGTAAAGACTATGTTGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCACACTTATTATTTGGGTTTTTGTGGGTAAAGACTATGTTGTA  234

seq1  TCCCTTTGTAATCACTGTGTTGCATGTAGTAGGCATGCAGTGAGTTTTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGTAATCACTGTGTTGCATGTAGTAGGCATGCAGTGAGTTTTTA  284

seq1  AAACAAATGAATGGAGCACAGCCTTCAGCCAGTGTTTCTGTTTGGGGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATGAATGGAGCACAGCCTTCAGCCAGTGTTTCTGTTTGGGGGAA  334

seq1  ATAGTTATAGCAGGTCTTCTCGTTTAATGTTTATTTCCTTGTTAAATTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATAGCAGGTCTTCTCGTTTAATGTTTATTTCCTTGTTAAATTCT  384

seq1  CTCACGCTTCTTTTTCCTTTTAATCACTTAAGCACTGAATTTTCGCCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTTCTTTTTCCTTTTAATCACTTAAGCACTGAATTTTCGCCTTC  434

seq1  TAGTATTCCACTTGAAACAAGAAGATTTACCTCCTATCAGAGGTACAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTCCACTTGAAACAAGAAGATTTACCTCCTATCAGAGGTACAGAT  484

seq1  GTGTCTGGCAACGTGAAAATGGAAAAAAAATGTAAATGATAACTTCTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGCAACGTGAAAATGGAAAAAAAATGTAAATGATAACTTCTATT  534

seq1  TGGTGGGATCAGAACTAAAAGAAGAGGAAGGAGGAAGGAGGAAGGAGGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGATCAGAACTAAAAGAAGAGGAAGGAGGAAGGAGGAAGGAGGAA  584

seq1  GGAGGAGGAGGAAGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAAGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAG  634

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAATCAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAATCAAG  684

seq1  TAACACTATGTAGACTGAACAAGTAACACACATATATCATGCATATATAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTATGTAGACTGAACAAGTAACACACATATATCATGCATATATAC  734

seq1  ATACATATATGTATGTGCGATGTATCTGATACATATACATACATATCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATATGTATGTGCGATGTATCTGATACATATACATACATATCACA  784

seq1  ACAATTAATGAAAAAAGAGTCCTTAAATTAGAAGAAGAACAAGGAGGGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAATGAAAAAAGAGTCCTTAAATTAGAAGAAGAACAAGGAGGGTT  834

seq1  CAGAGGAAGGAAAGGGAAAAACAATAATCTCAAATGTAAAATAAAACTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAGGAAAGGGAAAAACAATAATCTCAAATGTAAAATAAAACTAA  884

seq1  AAGAAATAATAATAACTCTGAAAAACCCAAAGAGTAACTAAATAATTATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAATAATAACTCTGAAAAACCCAAAGAGTAACTAAATAATTATG  934

seq1  AACATAAACGGAACCAGCAACGAGAACACAAAAGCAATTCATAGCAAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAACGGAACCAGCAACGAGAACACAAAAGCAATTCATAGCAAGAG  984

seq1  AAGTACACAACTCATTGAAGACATTTAACTTTTCTGGTAATGAGAAATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACAACTCATTGAAGACATTTAACTTTTCTGGTAATGAGAAATAA  1034

seq1  AATTTTAAAAAGTTAAAAAAATGTAAATGACAAATTCTCGTTGGTGGGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAAGTTAAAAAAATGTAAATGACAAATTCTCGTTGGTGGGAT  1084

seq1  CAGAACTAAAAATAACAGGAGAGCATAGGTTTTCTTACTTCTCAATGTTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTAAAAATAACAGGAGAGCATAGGTTTTCTTACTTCTCAATGTTT  1134

seq1  GGATACAGTGCAGGTGCTGTGAATTC  1174
      ||||||||||||||||||||||||||
seq2  GGATACAGTGCAGGTGCTGTGAATTC  1160


seq1: chr14_103653011_103653666
seq2: B6Ng01-321J01.g_69_726

seq1  GAATTCCCAGAGGGACAAACAAGATGCTTGCCAACACTCTAGGAAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAGGGACAAACAAGATGCTTGCCAACACTCTAGGAAGGCAG  50

seq1  GGAGGCAGAAAAGTCAGCCACTGGGAGCAAGCAAAACACTGAAGTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAAAAGTCAGCCACTGGGAGCAAGCAAAACACTGAAGTGCTCA  100

seq1  GTGTGGCTGGAGAAGAAAGAGGCACAGTCCCTTCACGCAGACCAGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTGGAGAAGAAAGAGGCACAGTCCCTTCACGCAGACCAGGAATA  150

seq1  AAGGGACAAACAAAGGAGAACAAACAGCTAAAAACAAAACTGAGCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAAACAAAGGAGAACAAACAGCTAAAAACAAAACTGAGCTGCAG  200

seq1  GACAGGTGCACTCCATTTAAGATGGCAAATCTGAGGAAGGGTGAACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGCACTCCATTTAAGATGGCAAATCTGAGGAAGGGTGAACACAT  250

seq1  TAAAAAGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCATTCGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCATTCGGGAGG  300

seq1  CAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAACTGA  350

seq1  GTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGAAACCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTTGAAACCACCT  400

seq1  CCGCACCCCCCCATCCCCCCCAAAAAAATAGACAGACAGACTTCAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACCCCCCCATCCCCCCCAAAAAAATAGACAGACAGACTTCAGAGGT  450

seq1  CAGACGGAGCTAAGAACAGCACTGCATAGATCCTGCAGACATGCTGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGGAGCTAAGAACAGCACTGCATAGATCCTGCAGACATGCTGAGGC  500

seq1  AGGAGGCTCAGGGAATGGTGAAGGCACATCTCACAGGGGTAGGAGGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTCAGGGAATGGTGAAGGCACATCTCACAGGGGTAGGAGGGGAT  550

seq1  AATAGGAGTTGAAAATATGGTTATAAGGTTAGTGGACGAAAAACTATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGTTGAAAATATGGTTATAAGGTTAGTGGACGAAAAACTATCCT  600

seq1  GCTTCATAAG-TCTTTATTTTTGTTGTGATGTGTTAT-GCAGATCCTGTG  648
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  GCTTCATAAGTTCTTTATTTTTGTTGTGATGTGTTATGGCAGATCCTGTG  650

seq1  CTGAGAAA  656
      |||| |||
seq2  CTGAAAAA  658


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