BAC Information

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BAC

Clone NameB6Ng01-322J19
Chromosome14 (Build37)
Map Location 123,931,921 - 124,068,679
singlet/doubletdoublet
Overlap geneVgcnl1, Itgbl1
Upstream genePcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneLOC668700, Fgf14, GA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322J19.bB6Ng01-322J19.g
ACCGA111409GA111410
length1,1501,065
definitionB6Ng01-322J19.b B6Ng01-322J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,931,921 - 123,933,087)(124,067,586 - 124,068,679)
sequence
gaattcatattccatataaactcttaacccaaaagatgatttcttatcac
aagtctaaaataacaatgcaatattcacatgttatataaggacccactta
agatttcttgcagtgttaaaaaaaagagacactttaaacctgagattgtt
atttttctaaagataatattttggtttcttaactaaggcatgattcagta
atatgaactgataaattatttttcaataagagttatagtatgtctcattt
caaggctctaaaacacttgcccaagaagtgttatttctaactgaaaaaaa
aagttaacttataaatgaaatagttagaataatacatatgcagacaaaca
ggcagtcagacacacacctgcttttacatacaaaatccaaaagtattaaa
gtaaaacaaagccacaggaattcacatacttggaagaaccctcaggcctg
cagcttgttattctaggcaagtgaatatgagaaatatttagcgatggaac
agagtgtattctgacaaaccactgaaagtatttgagctcacacacatggt
catgaagatggagggagagcttctggagttaaccacagctgatagcaatg
tgctcattggttgcttcagctaaccaaccaatcaagcttcttgtgttttt
attttcagaggattcctgaaagagttgatctttattttaaataatactac
ttgacttaagtgtaattcataatctgaaactattggaaattcgagcattt
tatttttgtaggaaataccctttactcagccactacaggctttttgttct
gacaagacaaagtgtcactaaccattgttacaccaaagtaaatagcactt
caaaaatgtgcccatttcattattaaatggtgatttttgttttaaataaa
ctctgccatcatatacaagaagtaactttatacagactgaccaggttgta
tttatatattcaaaacacatagatatgtatataatacatttaaaaaatag
agtaaaaaaaaaaataaaaatagagtctgatgaggagagaggtttatgga
aagactgaggggaaaagggagtggaggaataatatgtcatcaattttact
tcaaacttccttcaatcacaaagtacttgagaaaattatatcccatgtcg

gaattcacctgtgaagaggcctaaaaacaccacagaaaatcccttcagca
ccctggtcccagatgtacaagactccactctctcaggtatgattctggcc
cttgaatcccagactaaccttggaaactaagtttcccaagggacaaaagc
tgttgctctcccagttacactggtctaaagctcctttgtgccaaagtcag
aaaacaagaaaggcagctgtaacatcacttcctgtatgcctgaaagccca
gctcatgttcatgaaaatgactatacaaatgtgcaaaatccagaatgcca
tgaagctatgtgtacatcttttatgggagctttcaattggatatgtggat
aattttaaactggagatcagaattcaaaatcctatatcaaaacaaaagat
acagtaaaccctctgatagtttggtagagtaatatgccaagccattattc
aatgaagttctattagtgtatttttagtatatagtgaggatcataataag
attatttagaaatcaactccaacccctagtctccatattcctgcccacaa
ccccagctgcttgtccagagacaagaactgcactagggaccccagataat
actctaccctctgccttctaactccccaaaaagtacaaccaacagcccta
aactgcaccctatctcctgggctccatattctggcccacaattttagaag
aaaacttctttcctagaggccatgctggttctagggaacctagaggcaat
gtaaacacccaaaacctcagcaatcatgcagtccacaaaaatcccagcag
ggcattctactaggttatcagaagcccagctaactcagaccagaatacca
gagaaaaaacagaaacaggaaaaaacatctaaaacaaaacaacagcaaca
ggataaaacaaacaaacaaaaacaaacaaatttaaaagaccacccatcta
acaagataactatactcacccagacactagaggtcagcatagacacatca
tacagcagggcaatatggcactacagacccactatctactacggaatcac
tgaatattcaacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123931921_123933087
seq2: B6Ng01-322J19.b_44_1193

seq1  GAATTCATATTCCATATAAACTCTTAACCCAAAAGATGATTTCTTATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCCATATAAACTCTTAACCCAAAAGATGATTTCTTATCAC  50

seq1  AAGTCTAAAATAACAATGCAATATTCACATGTTATATAAGGACCCACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAAATAACAATGCAATATTCACATGTTATATAAGGACCCACTTA  100

seq1  AGATTTCTTGCAGTGTTAAAAAAAAGAGACACTTTAAACCTGAGATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTGCAGTGTTAAAAAAAAGAGACACTTTAAACCTGAGATTGTT  150

seq1  ATTTTTCTAAAGATAATATTTTGGTTTCTTAACTAAGGCATGATTCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTAAAGATAATATTTTGGTTTCTTAACTAAGGCATGATTCAGTA  200

seq1  ATATGAACTGATAAATTATTTTTCAATAAGAGTTATAGTATGTCTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACTGATAAATTATTTTTCAATAAGAGTTATAGTATGTCTCATTT  250

seq1  CAAGGCTCTAAAACACTTGCCCAAGAAGTGTTATTTCTAACTGAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTAAAACACTTGCCCAAGAAGTGTTATTTCTAACTGAAAAAAA  300

seq1  AAGTTAACTTATAAATGAAATAGTTAGAATAATACATATGCAGACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACTTATAAATGAAATAGTTAGAATAATACATATGCAGACAAACA  350

seq1  GGCAGTCAGACACACACCTGCTTTTACATACAAAATCCAAAAGTATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCAGACACACACCTGCTTTTACATACAAAATCCAAAAGTATTAAA  400

seq1  GTAAAACAAAGCCACAGGAATTCACATACTTGGAAGAACCCTCAGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAAAGCCACAGGAATTCACATACTTGGAAGAACCCTCAGGCCTG  450

seq1  CAGCTTGTTATTCTAGGCAAGTGAATATGAGAAATATTTAGCGATGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTTATTCTAGGCAAGTGAATATGAGAAATATTTAGCGATGGAAC  500

seq1  AGAGTGTATTCTGACAAACCACTGAAAGTATTTGAGCTCACACACATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTATTCTGACAAACCACTGAAAGTATTTGAGCTCACACACATGGT  550

seq1  CATGAAGATGGAGGGAGAGCTTCTGGAGTTAACCACAGCTGATAGCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATGGAGGGAGAGCTTCTGGAGTTAACCACAGCTGATAGCAATG  600

seq1  TGCTCATTGGTTGCTTCAGCTAACCAACCAATCAAGCTTCTTGTGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTGGTTGCTTCAGCTAACCAACCAATCAAGCTTCTTGTGTTTTT  650

seq1  ATTTTCAGAGGATTCCTGAAAGAGTTGATCTTTATTTTAAATAATACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGAGGATTCCTGAAAGAGTTGATCTTTATTTTAAATAATACTAC  700

seq1  TTGACTTAAGTGTAATTCATAATCTGAAACTATTGGAAATTCGAGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAAGTGTAATTCATAATCTGAAACTATTGGAAATTCGAGCATTT  750

seq1  TATTTTTGTAGGAAATACCCTTTACTCAGCCACTACAGGCTTTTTGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTAGGAAATACCCTTTACTCAGCCACTACAGGCTTTTTGTTCT  800

seq1  GACAAGACAAAGTGTCACTAACCATTGTTACACCAAAGTAAATAGCACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGACAAAGTGTCACTAACCATTGTTACACCAAAGTAAATAGCACTT  850

seq1  CAAAAATGTGCCCATTTCATTATTAAATGGTGATTTTTGTTTTAAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTGCCCATTTCATTATTAAATGGTGATTTTTGTTTTAAATAAA  900

seq1  CTCTGCCATCATATACAAAGAAGTAACTTTATACAGACTGACCAGGTTGT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTGCCATCATATAC-AAGAAGTAACTTTATACAGACTGACCAGGTTGT  949

seq1  ATTTATATATTCAAAACACATAGATATGTATATAATAACAATTTAAAAAA  1000
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  ATTTATATATTCAAAACACATAGATATGTATATAATA--CATTTAAAAAA  997

seq1  TAGAAGTAAAAAAAAAAAATAAAAAATAGAAGTCTTGAATTGAGAGAGAG  1050
      ||| ||||||||||||||   |||||||| |||| |||  |||| |||||
seq2  TAG-AGTAAAAAAAAAAA--TAAAAATAG-AGTC-TGA--TGAG-GAGAG  1039

seq1  -GGTTTATGGAAAGGACTGAAGGGGAAAAGGAGTGGAGG-ATAATAATGT  1098
       |||||||||||| |||||| ||| ||| |||||||||| ||||| ||||
seq2  AGGTTTATGGAAA-GACTGAGGGGAAAAGGGAGTGGAGGAATAAT-ATGT  1087

seq1  CATCAAATTTTAACTTCAAAATTTCCTTCATTCACAAAGTACATGAGGAA  1148
      ||||||  ||| ||||| ||| |||||||| ||||||||||| ||| |||
seq2  CATCAA--TTTTACTTC-AAACTTCCTTCAATCACAAAGTACTTGA-GAA  1133

seq1  AAATATATACCCATTGTCG  1167
      || ||||| |||| |||||
seq2  AATTATAT-CCCA-TGTCG  1150

seq1: chr14_124067586_124068679
seq2: B6Ng01-322J19.g_64_1128 (reverse)

seq1  CATGTTGGAATATTCAGTGATTTCTGTAGTAGAATAGTTGGGTTCTGGTA  50
      |||||| ||||||||||||| ||| ||||||| |||||  || ||| |||
seq2  CATGTT-GAATATTCAGTGA-TTCCGTAGTAG-ATAGT--GGGTCT-GTA  44

seq1  GTGCCATATTGCCCTGGCTGTTATGGATTGTGTTCTTATGCTGACCTCTA  100
      ||||||||||||||| |||| ||||   |||||   ||||||||||||||
seq2  GTGCCATATTGCCCT-GCTG-TATG--ATGTGT--CTATGCTGACCTCTA  88

seq1  GTTGTCTGGGGTTGGAGTTATAGTTTATCTTTGTTAGATGGGTGGGTCTT  150
      | ||||||||    ||| ||||| ||||| ||||||||||||| ||||||
seq2  G-TGTCTGGG---TGAG-TATAG-TTATC-TTGTTAGATGGGT-GGTCTT  130

seq1  TTAAATTTTGTTTGTTTTTTGTTTTGTTTTGTTTTTATTCTTGTTGCTGT  200
      ||||| |||||||| |||||||||   ||||||||   || |||||||||
seq2  TTAAA-TTTGTTTG-TTTTTGTTT--GTTTGTTTT--ATCCTGTTGCTGT  174

seq1  TGTTTTGTTTTTAGATGTTTTTTCCTTGTTTCTGTTTTTTCTCTGGTATT  250
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTTTTG-TTTTAGATGTTTTTTCC-TGTTTCTGTTTTTTCTCTGGTATT  222

seq1  CTGGTCTGAGTTAGCTGGGCTTCTGATAACCTAGTAGAATGCCCCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGGTCTGAGTTAGCTGGGCTTCTGATAACCTAGTAGAATG-CCCTGCTG  271

seq1  GGATTTTTGTGGACTGCATGATTGCTGAGGTTTTGGGTGTTTACATTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTGTGGACTGCATGATTGCTGAGGTTTTGGGTGTTTACATTGCC  321

seq1  TCTAGGTTCCCTAGAACCAGCATGGCCTCTAGGAAAGAAGTTTTCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTCCCTAGAACCAGCATGGCCTCTAGGAAAGAAGTTTTCTTCTA  371

seq1  AAATTGTGGGCCAGAATATGGAGCCCAGGAGATAGGGTGCAGTTTAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGGGCCAGAATATGGAGCCCAGGAGATAGGGTGCAGTTTAGGGC  421

seq1  TGTTGGTTGTACTTTTTGGGGAGTTAGAAGGCAGAGGGTAGAGTATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTGTACTTTTTGGGGAGTTAGAAGGCAGAGGGTAGAGTATTATC  471

seq1  TGGGGTCCCTAGTGCAGTTCTTGTCTCTGGACAAGCAGCTGGGGTTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCCTAGTGCAGTTCTTGTCTCTGGACAAGCAGCTGGGGTTGTGG  521

seq1  GCAGGAATATGGAGACTAGGGGTTGGAGTTGATTTCTAAATAATCTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATATGGAGACTAGGGGTTGGAGTTGATTTCTAAATAATCTTATT  571

seq1  ATGATCCTCACTATATACTAAAAATACACTAATAGAACTTCATTGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCTCACTATATACTAAAAATACACTAATAGAACTTCATTGAATAA  621

seq1  TGGCTTGGCATATTACTCTACCAAACTATCAGAGGGTTTACTGTATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGGCATATTACTCTACCAAACTATCAGAGGGTTTACTGTATCTTT  671

seq1  TGTTTTGATATAGGATTTTGAATTCTGATCTCCAGTTTAAAATTATCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGATATAGGATTTTGAATTCTGATCTCCAGTTTAAAATTATCCAC  721

seq1  ATATCCAATTGAAAGCTCCCATAAAAGATGTACACATAGCTTCATGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATTGAAAGCTCCCATAAAAGATGTACACATAGCTTCATGGCAT  771

seq1  TCTGGATTTTGCACATTTGTATAGTCATTTTCATGAACATGAGCTGGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTTTGCACATTTGTATAGTCATTTTCATGAACATGAGCTGGGCT  821

seq1  TTCAGGCATACAGGAAGTGATGTTACAGCTGCCTTTCTTGTTTTCTGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCATACAGGAAGTGATGTTACAGCTGCCTTTCTTGTTTTCTGACT  871

seq1  TTGGCACAAAGGAGCTTTAGACCAGTGTAACTGGGAGAGCAACAGCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACAAAGGAGCTTTAGACCAGTGTAACTGGGAGAGCAACAGCTTTT  921

seq1  GTCCCTTGGGAAACTTAGTTTCCAAGGTTAGTCTGGGATTCAAGGGCCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTGGGAAACTTAGTTTCCAAGGTTAGTCTGGGATTCAAGGGCCAG  971

seq1  AATCATACCTGAGAGAGTGGAGTCTTGTACATCTGGGACCAGGGTGCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATACCTGAGAGAGTGGAGTCTTGTACATCTGGGACCAGGGTGCTGA  1021

seq1  AGGGATTTTCTGTGGTGTTTTTAGGCCTCTTCACAGGTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTTCTGTGGTGTTTTTAGGCCTCTTCACAGGTGAATTC  1065