BAC Information

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BAC

Clone NameB6Ng01-324B11
Chromosome14 (Build37)12 (Build37)
Map Location 60,134,454 - 60,134,87958,409,085 - 58,409,937
singlet/doubletsingletsinglet
Overlap geneCab39l
Upstream geneEG668177, EG668182, 1700129C05Rik, EG380907, Rcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2
Downstream geneCdadc1, Tmem46, Atp8a2, LOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324B11.bB6Ng01-324B11.g
ACCGA112497GA112498
length1,018849
definitionB6Ng01-324B11.b B6Ng01-324B11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,134,454 - 60,134,879)(58,409,085 - 58,409,937)
sequence
gaattctcaactgaggaataccaactgcctgagaagcacctaaagcaatg
ttcaacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaacataaaaaactcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagtgggtacaatctctctggaagtcagtctggtggttcctca
gaaaattggacatagtactacctgaggacccagaaatatcaatcctgggc
atatacccagaagatgctccaacatgtaataaggacacatgatccactat
gtttatagcagccttatttataatagccagaagctggaaagaacccagat
gttcctcaacagaggaatggatacagaaaatgtggtacatttatacaata
gaatactattcagctattaaaaacaatgaattcatgaaattcttagacaa
atggatggaattagaaactatcattctgagtgaggtaacccaattacaaa
agaacacacatgatatgcacttactgataagtggatattagcccaaaatc
ttggaatacccaagatacaattcacagaccacatgaagctcaagaagaag
gaagaccaaagtgtggatacttcatagtacattttaaagaagaaaaccct
aattaattttcaaagacactgaatattctaaattttcatttgtgatattt
ctggggaccagggtctcactttgctgcccacacaggccttaaactcatga
agcttctgccttaagcttccaaatagtgggactacagacctgcaccctgc
agcaacccccacagtaacttctactcactaattgcctgggtgactaattg
tctctgtttaaattaatcttatttggggtcattagatggtgattttcaaa
ttctgtattctatttaaacttataggtgatattccctgtacaaagatttt
tccttgagtaactttttt
gaattcctatctatgtagtccattgcaaccattcttttccttgcactatt
tttctgttaagaaaagtaagaatttgtaaaatgataaataagtatataga
agtattttagagatttcatgattaacaatttatattttatgaaatcatgc
agtgtctagatccgggtcataatattttaaatacttaacttggttttata
tatatatatatatatatatatatatatatatatatatatatatatatata
taaaaaaattggagaatttataatcacagagatgattaatgcaatttatc
ttcaaatcaccatggaaagtaattctaaataaataccattgtaatgatgt
aattcagatgaccacaaataaataaataatctaattggatactggatgac
aacttgtcttttaatgacaaataatcataaactttttgtttctttgtgat
gatgatagggaaatataagaatatatcttaaggaaaattgataatatatt
aagaagtagaagtttaaaacagatttaaaactttcctgacatagaccatg
attgtaaaagccggtgttgtaataaatagatttgtttttttaaacatttt
gtatgtagtacaaaaataattgaatatatttggggctatcatgacagtaa
tgattttgtataactaagtagtctatttcttgaagagactcattgagcag
taatatttacaatttaacttttgaataatacagtttagcatgtaattcaa
tatttatttattgttgtgtattaagaattcatgatggaacaagttgataa
tacatgcaaaatggatggtaattgattgttcttatagtaatatttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_60134454_60134879
seq2: B6Ng01-324B11.b_299_724 (reverse)

seq1  TGAAGTATCCACACTTTGGTTTTCCTTCTTCTTGAGCTTCATTTGGTCTG  50
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TGAAGTATCCACACTTTGGTCTTCCTTCTTCTTGAGCTTCATGTGGTCTG  50

seq1  TGAATTGTATCTTGGGTATTTGAAACTTCTGGGCTAATATCCACTTATCA  100
      ||||||||||||||||||||  ||  || |||||||||||||||||||||
seq2  TGAATTGTATCTTGGGTATTCCAAGATTTTGGGCTAATATCCACTTATCA  100

seq1  GTGAGTGAATACCATGTGTTTTCTTTTATGATTGGGTTACCTCACTCAGG  150
      || |||| ||| ||||||| ||||||| | ||||||||||||||||||| 
seq2  GTAAGTGCATATCATGTGTGTTCTTTTGTAATTGGGTTACCTCACTCAGA  150

seq1  ATGATATCCTCCAGATCCATCCATTTGCCTAAGAATTTCATAAATTCATT  200
      ||||||   || |  |||||||||||| ||||||||||||| ||||||||
seq2  ATGATAGTTTCTAATTCCATCCATTTGTCTAAGAATTTCATGAATTCATT  200

seq1  GTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCT  250
      ||||||||||||||| ||||| || ||||| |||||||||||||||||||
seq2  GTTTTTAATAGCTGAATAGTATTCTATTGTATAAATGTACCACATTTTCT  250

seq1  GTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCT  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTATCCATTCCTCTGTTGAGGAACATCTGGGTTCTTTCCAGCTTCTGGCT  300

seq1  ATTATAGATAAGACTGCTATGAACATAGTAGAGCATGTACCCTTATTACA  350
      |||||| ||||| ||||||| |||||||| || |||||  ||||||||||
seq2  ATTATAAATAAGGCTGCTATAAACATAGTGGATCATGTGTCCTTATTACA  350

seq1  TATTGGAGCATCTTCTGGGTATATGCCCAGGAGTGGTATAGCTGGGTCCT  400
      | |||||||||||||||||||||||||||||| || |||  |||||||||
seq2  TGTTGGAGCATCTTCTGGGTATATGCCCAGGATTGATATTTCTGGGTCCT  400

seq1  CCGGTAGTACTATGTCCAATTTTCTG  426
      | ||||||||||||||||||||||||
seq2  CAGGTAGTACTATGTCCAATTTTCTG  426

seq1: chr12_58409085_58409937
seq2: B6Ng01-324B11.g_65_913

seq1  GAATTCCTATCTATGTAGTCCATTGCAACCATTCTTTTCCTTGCACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCTATGTAGTCCATTGCAACCATTCTTTTCCTTGCACTATT  50

seq1  TTTCTGTTAAGAAAAGTAAGAATTTGTAAAATGATAAATAAGTATATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTAAGAAAAGTAAGAATTTGTAAAATGATAAATAAGTATATAGA  100

seq1  AGTATTTTAGAGATTTCATGATTAACAATTTATATTTTATGAAATCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAGAGATTTCATGATTAACAATTTATATTTTATGAAATCATGC  150

seq1  AGTGTCTAGATCCGGGTCATAATATTTTAAATACTTAACTTGGTTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTAGATCCGGGTCATAATATTTTAAATACTTAACTTGGTTTTATA  200

seq1  TATATATATATATATATATATATATATATATATATATATATATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  250

seq1  TAAAAGAATTGGAGAATTTTAGATCACAGAGATGATTAATGCAGTTTATC  300
      ||||| |||||||||||||   ||||||||||||||||||||| ||||||
seq2  TAAAAAAATTGGAGAATTTATAATCACAGAGATGATTAATGCAATTTATC  300

seq1  TTCAAATCACCATGGAAAGTAGTTCTAAATAAATACCATTGTAATGATGT  350
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCAAATCACCATGGAAAGTAATTCTAAATAAATACCATTGTAATGATGT  350

seq1  AATTCAGATGACCACAAATAAATAAATAATCTAGTTGGATACTGGATGAC  400
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATTCAGATGACCACAAATAAATAAATAATCTAATTGGATACTGGATGAC  400

seq1  AACTTGTCTTTTAGTGACAAATAATCATAAACTTTTTGTTTCTTTGTGAT  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCTTTTAATGACAAATAATCATAAACTTTTTGTTTCTTTGTGAT  450

seq1  GATGATAGGGAAATATAAGAATATATCTTAAGGAAAATTGATAATATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAGGGAAATATAAGAATATATCTTAAGGAAAATTGATAATATATT  500

seq1  AAGAAGTAGAAGTTTAAAACA-ATTTAAAACTTTCCTGACTTTAAACCAT  549
      ||||||||||||||||||||| ||||||||||||||||||  || |||||
seq2  AAGAAGTAGAAGTTTAAAACAGATTTAAAACTTTCCTGAC-ATAGACCAT  549

seq1  GATTGT-AAAGCCGGTGTTGTAATAAATAGATTTGTTTTTTTAAACATTT  598
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAAAAGCCGGTGTTGTAATAAATAGATTTGTTTTTTTAAACATTT  599

seq1  TGTATGTAGTACAAAAATAATTGAATATATTTGGGGCTATCATGACAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAGTACAAAAATAATTGAATATATTTGGGGCTATCATGACAGTA  649

seq1  ATGATTTTGTATAACTAAGTAGTCTATTTCTTGAAGAGACTCATTGAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTGTATAACTAAGTAGTCTATTTCTTGAAGAGACTCATTGAGCA  699

seq1  GTAATATTTACAATTTAACTTTTGAATAATACAGTTTAGCATGTAATTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTAATATTTACAATTTAACTTTTGAATAATACAGTTTAGCATGTAATTC-  748

seq1  AATATTTATTTATTGTTGTGTATTTAAGAATTCATGATGGAACAAGTTGA  798
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  AATATTTATTTATTGTTGTGTA-TTAAGAATTCATGATGGAACAAGTTG-  796

seq1  ATAATACATGCAAAAATGGATGGAATTTAATTGTTCTTATTAGTAATATT  848
      ||||||||||| ||||||||||| | || |||||||||| ||||||||||
seq2  ATAATACATGC-AAAATGGATGGTAATTGATTGTTCTTA-TAGTAATATT  844

seq1  TTTCA  853
      |||||
seq2  TTTCA  849