BAC Information

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BAC

Clone NameB6Ng01-326B17
Chromosome14 (Build37)
Map Location 19,823,748 - 20,036,100
singlet/doubletdoublet
Overlap geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneLOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326B17.bB6Ng01-326B17.g
ACCGA113996GA113997
length1,059985
definitionB6Ng01-326B17.b B6Ng01-326B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,035,038 - 20,036,100)(19,823,748 - 19,824,767)
sequence
gaattcttagaactatagtatttccttcactatgttcaggatttgattat
gagcctcgaaaaataaatgtgtagtcaaatctcctgaattgattccaaag
ttactttcagttagaaaaagtaaataataaataatgaattacctctggcc
tgaactgggccttctttaaacagttatgagtaaatgagatctcagtatta
acttgttttttcttgtaaacacacttctctctttcctgggagaagaaaaa
tgccaaaagtaccaagtcaatcaacagggctctgctgtcaaaaacactta
gcatcttcatatattagctctactaccttgggggaaattcctttaagtct
ataagcctcagttcctggatctgtcaatggaaataaaacagatagcactg
acatgaaggctacaatatatgagatatctagttagacctcagtaagtaat
agctgttatttataattttcatttttaaaagtccttcaaagtcaccctga
gtgtacacatatatgcttgttctcttcctatcagaaaagcaaaagaaaga
gagattccagcatggctgctactggtgttatggagaggggtctaactagc
tgaataaactcttttaaatacttggagtcagttgaagaattgatggtagg
aacagctactggaggcatttatattattagaccatggtaagacacttaaa
aggttctaatttatttgacaggcttttgtttcttatcagctatattaggc
atgtggttaacattccctgtaagctcagtagagttagatgatgccattgt
ctctgctttcacacaactctgcctctaaccaatccatactagaagaggtg
gattggggacacacagtaagcatcaggcatcttgactaacttctattgca
ttggcgtatagactcacaaggaagaaaaatttaaggggatgaagagagca
gaaggatacaatgactagcagattccaagtgaaatactaagtttatttcc
aaattaaaggtcatcccaactgcagaaaaccagcacatttcaagcagcat
aattctctt
gaattctttgataacagacacagattccccactcagtttttcaagaacag
agagaaacacagtagggggaagtaccaacgctccctcttctctaggcact
acagagagacaaggtagtgtgtgcagagggtcagcgaactttaagcgtgg
aataaaactagaacaggccctcaggaaaaaaagacccaagagatgcccag
ttgctagctaagtatgttttatttcttccctcatagtcaaaaggtcgggt
tttttcttttctcatttcttttcttttcttttcttttcttttttcttttc
ttttcttttcttttctttcctttcctttcctttcctttcctttcctttcc
tttccttttttcctttcctttcctttccctttcttttcttttctttctcc
cccctctctcttttctttgaagatagaatggggcaagataaacagcttat
ctaaaattttttatttctaatttttccccttgctgctgagttcttactaa
aaggatggaaaataaaattgtgtggtagacacgtaggaaaatccctaaag
gacatgcagacagattcccgatttccatcataagctataaagcaaggtgc
tagggacagtagtgtggacagatgtctctaatgacatcgtattggcagca
cacatgaagtaccttttcccaactcccctactccctgcataggaaagaat
atcctcgaactgggttagaccgttgtgataatgcatgttattatagctgt
caagccaacccctgactgattcagaaactaatacgtagtaaacaccgaca
tgaatcccaagtacaactaagccatagtacagagaggatcataactgcag
tctgtagtatcacagcatctttacacagatgcttgagctttgagatcacc
tgaccatcaactagacttgcacatgataggtaagtcttacactgactaca
tctactgatacatatcacttatagcaatgcatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_20035038_20036100
seq2: B6Ng01-326B17.b_49_1107 (reverse)

seq1  AAGA-AATTATTGCTGCTTG-AATGTGCTGGTTTTCTGCAGGTTGGGATG  48
      |||| ||||| ||||||||| ||||||||||||||||||| |||||||||
seq2  AAGAGAATTA-TGCTGCTTGAAATGTGCTGGTTTTCTGCA-GTTGGGATG  48

seq1  ACCTTTAATTTGGAAATTAAACTTAGTATTTTCACTTGGAATCTGCTAGT  98
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  ACCTTTAATTTGGAAA-TAAACTTAGTA-TTTCACTTGGAATCTGCTAGT  96

seq1  CATTGTTATCCTTCCTGCTCTCTTCATCCCCTTAAATTTTTCTTCCTTGT  148
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATTG-TATCCTT-CTGCTCTCTTCATCCCCTTAAATTTTTCTTCCTTGT  144

seq1  GAGTCTATACGCCAATGCAATAGAAGTTAGTCAAGATGCCTGATGCTTAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTATACGCCAATGCAATAGAAGTTAGTCAAGATGCCTGATGCTTAC  194

seq1  TGTGTGTCCCCAATCCACCTCTTCTAGTATGGATTGGTTAGAGGCAGAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCCCCAATCCACCTCTTCTAGTATGGATTGGTTAGAGGCAGAGT  244

seq1  TGTGTGAAAGCAGAGACAATGGCATCATCTAACTCTACTGAGCTTACAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAAGCAGAGACAATGGCATCATCTAACTCTACTGAGCTTACAGG  294

seq1  GAATGTTAACCACATGCCTAATATAGCTGATAAGAAACAAAAGCCTGTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTAACCACATGCCTAATATAGCTGATAAGAAACAAAAGCCTGTCA  344

seq1  AATAAATTAGAACCTTTTAAGTGTCTTACCATGGTCTAATAATATAAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAGAACCTTTTAAGTGTCTTACCATGGTCTAATAATATAAATG  394

seq1  CCTCCAGTAGCTGTTCCTACCATCAATTCTTCAACTGACTCCAAGTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTAGCTGTTCCTACCATCAATTCTTCAACTGACTCCAAGTATTT  444

seq1  AAAAGAGTTTATTCAGCTAGTTAGACCCCTCTCCATAACACCAGTAGCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTTTATTCAGCTAGTTAGACCCCTCTCCATAACACCAGTAGCAG  494

seq1  CCATGCTGGAATCTCTCTTTCTTTTGCTTTTCTGATAGGAAGAGAACAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGGAATCTCTCTTTCTTTTGCTTTTCTGATAGGAAGAGAACAAG  544

seq1  CATATATGTGTACACTCAGGGTGACTTTGAAGGACTTTTAAAAATGAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGTGTACACTCAGGGTGACTTTGAAGGACTTTTAAAAATGAAAA  594

seq1  TTATAAATAACAGCTATTACTTACTGAGGTCTAACTAGATATCTCATATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAACAGCTATTACTTACTGAGGTCTAACTAGATATCTCATATA  644

seq1  TTGTAGCCTTCATGTCAGTGCTATCTGTTTTATTTCCATTGACAGATCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCCTTCATGTCAGTGCTATCTGTTTTATTTCCATTGACAGATCCA  694

seq1  GGAACTGAGGCTTATAGACTTAAAGGAATTTCCCCCAAGGTAGTAGAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAGGCTTATAGACTTAAAGGAATTTCCCCCAAGGTAGTAGAGCT  744

seq1  AATATATGAAGATGCTAAGTGTTTTTGACAGCAGAGCCCTGTTGATTGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGAAGATGCTAAGTGTTTTTGACAGCAGAGCCCTGTTGATTGAC  794

seq1  TTGGTACTTTTGGCATTTTTCTTCTCCCAGGAAAGAGAGAAGTGTGTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACTTTTGGCATTTTTCTTCTCCCAGGAAAGAGAGAAGTGTGTTTA  844

seq1  CAAGAAAAAACAAGTTAATACTGAGATCTCATTTACTCATAACTGTTTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAACAAGTTAATACTGAGATCTCATTTACTCATAACTGTTTAA  894

seq1  AGAAGGCCCAGTTCAGGCCAGAGGTAATTCATTATTTATTATTTACTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCCAGTTCAGGCCAGAGGTAATTCATTATTTATTATTTACTTTT  944

seq1  TCTAACTGAAAGTAACTTTGGAATCAATTCAGGAGATTTGACTACACATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTGAAAGTAACTTTGGAATCAATTCAGGAGATTTGACTACACATT  994

seq1  TATTTTTCGAGGCTCATAATCAAATCCTGAACATAGTGAAGGAAATACTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCGAGGCTCATAATCAAATCCTGAACATAGTGAAGGAAATACTA  1044

seq1  TAGTTCTAAGAATTC  1063
      |||||||||||||||
seq2  TAGTTCTAAGAATTC  1059

seq1: chr14_19823748_19824767
seq2: B6Ng01-326B17.g_68_1052

seq1  GAATTCTTTGATAACAGACACAGATTCCCCACTCAGTTTTTCAAGAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATAACAGACACAGATTCCCCACTCAGTTTTTCAAGAACAG  50

seq1  AGAGAAACACAGTAGGGGGAAGTACCAACGCTCCCTCTTCTCTAGGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACACAGTAGGGGGAAGTACCAACGCTCCCTCTTCTCTAGGCACT  100

seq1  ACAGAGAGACAAGGTAGTGTGTGCAGAGGGTCAGCGAACTTTAAGCGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGACAAGGTAGTGTGTGCAGAGGGTCAGCGAACTTTAAGCGTGG  150

seq1  AATAAAACTAGAACAGGCCCTCAGGAAAAAAAGACCCAAGAGATGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTAGAACAGGCCCTCAGGAAAAAAAGACCCAAGAGATGCCCAG  200

seq1  TTGCTAGCTAAGTATGTTTTATTTCTTCCCTCATAGTCAAAAGGTCGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCTAAGTATGTTTTATTTCTTCCCTCATAGTCAAAAGGTCGGGT  250

seq1  TTTTTCTTTTCTCATTTCTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTCTCATTTCTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTC  300

seq1  TTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC  350

seq1  TTTCCTTTTTTCCTTTCCTTTCCTTTCCCTTTCTTTTCTTTTCTTTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTTTCCTTTCCTTTCCTTTCCCTTTCTTTTCTTTTCTTTCTCC  400

seq1  CCCCTCTCTCTTTTCTTTGAAGATAGAATGGGGCAAGATAAACAGCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTCTTTTCTTTGAAGATAGAATGGGGCAAGATAAACAGCTTAT  450

seq1  CTAAAATTTTTTATTTCTAATTTTTCCCCTTGCTGCTGAGTTCTTACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTTTTATTTCTAATTTTTCCCCTTGCTGCTGAGTTCTTACTAA  500

seq1  AAGGATGGAAAATAAAATTGTGTGGTAGACACGTAGGAAAATCCCTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGAAAATAAAATTGTGTGGTAGACACGTAGGAAAATCCCTAAAG  550

seq1  GACATGCAGACAGATTCCCGATTTCCATCATAAGCTATAAAGCAAGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCAGACAGATTCCCGATTTCCATCATAAGCTATAAAGCAAGGTGC  600

seq1  TAGGGACAGTAGTGTGGACAGATGTCTCTAATGACATCGTATTGGCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACAGTAGTGTGGACAGATGTCTCTAATGACATCGTATTGGCAGCA  650

seq1  CACATGAAGTACCTTTTCCCAACTCCCCTACTCCCTGCATAGGAAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGTACCTTTTCCCAACTCCCCTACTCCCTGCATAGGAAAGAAT  700

seq1  ATCCTCGAACTGGGTTAGACCGTTGTGATAATGCATGTTATTATAGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCGAACTGGGTTAGACCGTTGTGATAATGCATGTTATTATAGCTGT  750

seq1  CAAAGCCAACCCCTGACTGATTCAGAAACTAATACGTAGGTAAAACACCG  800
      | |||||||||||||||||||||||||||||||||||||   ||||||||
seq2  C-AAGCCAACCCCTGACTGATTCAGAAACTAATACGTAG--TAAACACCG  797

seq1  ACATGAATCCCAAGTACAAACTAAGCCAATAAGTACAAGGAGAGGATCAT  850
      ||||||||||||||||| ||||||||||   ||||||  |||||||||||
seq2  ACATGAATCCCAAGTAC-AACTAAGCCA--TAGTACA--GAGAGGATCAT  842

seq1  AACTGCAGTCTGTAGTATCCACAGCCACCTTTTACACAAGGATGGCTTTG  900
      |||||||||||||||||| ||||||  |  ||||||||  ||||   |||
seq2  AACTGCAGTCTGTAGTAT-CACAGCATC--TTTACACA--GATG--CTTG  885

seq1  AGCTTTGAGATCCACCCTGACCCCATCAAACTTAAGACTTTGCACATGAT  950
      ||||||||||||   |||||  ||||| ||||  |||| |||||||||||
seq2  AGCTTTGAGATC--ACCTGA--CCATC-AACT--AGAC-TTGCACATGAT  927

seq1  AGGTAAGTTCTTTAACACTGAGCTACATCTTTAACCTGAGACCATATCAC  1000
      ||||||| ||||  ||||||| ||||||||     |||| | ||||||||
seq2  AGGTAAG-TCTT--ACACTGA-CTACATCT----ACTGATA-CATATCAC  968

seq1  TTTTATAGCACATGCATGTC  1020
        |||||||| |||||||||
seq2  --TTATAGCA-ATGCATGTC  985