BAC Information

Click to search

BAC

Clone NameB6Ng01-327C17
Chromosome14 (Build37)
Map Location 109,987,034 - 110,128,010
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1, LOC640892
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327C17.bB6Ng01-327C17.g
ACCGA114787GA114788
length1,123847
definitionB6Ng01-327C17.b B6Ng01-327C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,126,884 - 110,128,010)(109,987,034 - 109,987,878)
sequence
gaattcattctttattctgtccctgaaagtgtttctccattttcttttat
aataactagaaagttaaaaataaaattcaacagtattaatttttctctat
attgctttctaaactaatctcattaagccaccttcccaattttttcttat
tataatcatgactacattaggattttcagactaagcccttgagtattgaa
tgctggaattcgaataattcataaaagaacaaaataacatatcattaaat
tcatgggaacatccacaggaacaattctgaaagtgttggtccctgggtta
ttctctgaaatttctcaatccaattcattcttcctttttatatttgttcc
aactgagaaaaacggtccaaatagggtagtaaagcactccaaaaataata
atattgcaaaggattatactccaggggacgggggagtgtggttgtttttc
cactaattacaaatatggacaaaggaaagaacagtcatgtctcttgtttt
taataatttagttactctgtgaggaggacttgaccaaagtcagtgctttc
ctttttaaggcaacaataattaggatagttacaaattattgttattatta
ttttacttacatttacctggttcacataaaacaaaccatgtcaatggact
atattcttttacagtattatattagttgagataatgtttttaggattacc
agtgagcaaggatcagtgagacagaaataaacattcattcatgcatctct
attatgtataaacaatggatatttttctgtaagacaaagcaggaaaaaat
agagttctccaacgactgatcttgtagaatatgcttaaataaagttggaa
tagtgcacacaagaagtggatgatcctgtccatgttgctagacgaggtca
aggtgagttattatctacttcctcactcagaaacacttcacatttctata
atacaagcattatagatccttgcagagttctgaggcctggtgcaactaaa
tggtaaggtacttgtgctgagtgcatgaagtctattgttttgttttcagt
accatcgagtcagtgaaagtttcataccttaagtgcaagcattagttcat
atagtcatacatacagtggcagc

gaattcatccttttatcattttgttaggctaaattggttaaagtttatga
acttttggcaggcttgcacaaagatgtgctgtaaaaagattacaccgtat
ataacagatctatttccagaggtttattggagaagtgggggatggaaggc
ttctgggagtgagggcatgacaggtagagacagacagacagacataccaa
gaggcaaacagaaagagacagaatgaagaggacccagaacaagaaagaga
aaagtggacacagagaggggtcaggggtggggaatgtgtaatacccagag
gttctttaaaagaatgcatgtgtagttagcaactcctaatgacagtgtaa
atgcatgcatctagttgcagcaggtgatgacataagctgctcaagttgct
gcttcttagttgctaaaaggtaggccaccaggaaaccactatatctacaa
aaatgctcccaatttgagaatgtttaattgaaagagatatacttagaatt
tggcataatacttgtgttgatttttctttacttccaggaagaaagaaaga
gagagagagaaaaaaaacatgttaacaaagttgaaaggtagtttatcttt
ttaccccctaattagaataaaagcatattagtcactaagtgtataagtga
gattatattaaagttggatcttttctatcataggggagttaacgaggatg
gtgagaaggatagagacaaataggcaggcaaatgtgatagaggtgtttga
tgtgaaatctccaaagaatcattaaaaatgtatggttggaaaagaaaata
tatatagaatgacacatcttcttaataaaattcaggtgtgggaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110126884_110128010
seq2: B6Ng01-327C17.b_45_1167 (reverse)

seq1  GCTGCAACTGTATGTATGAACTATATGAACT-ATGCTGCAACTATAGGTA  49
      ||||| |||||||||||| |||||||||||| |||||   |||  |||||
seq2  GCTGCCACTGTATGTATG-ACTATATGAACTAATGCTTGCACTTAAGGTA  49

seq1  TG-AACTTTCACACGACTTCGTGGTACTGAAAACAAAACAATAGACTTCA  98
      || |||||||||  ||||   |||||||||||||||||||||||||||||
seq2  TGAAACTTTCAC-TGACTCGATGGTACTGAAAACAAAACAATAGACTTCA  98

seq1  TGCACTCAGCACAAGTACCCTACCATTTAGTTTGCACCAGCCCTCAGAAC  148
      ||||||||||||||||||| |||||||||| ||||||||| |||||||||
seq2  TGCACTCAGCACAAGTACCTTACCATTTAG-TTGCACCAGGCCTCAGAAC  147

seq1  TCTTGCAAGGATCTATAATGCTTGTATTATAGAAATGTGAAGTGTTTTCT  198
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TC-TGCAAGGATCTATAATGCTTGTATTATAGAAATGTGAAGTG-TTTCT  195

seq1  GAAGTGAGGAAGTAGATAATAACTCACCTTGACCTCGTCTAGCAACATGG  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AGTGAGGAAGTAGATAATAACTCACCTTGACCTCGTCTAGCAACATGG  244

seq1  ACAGGATCATCCACTTCTTGTGTGCACTATTCCAACTTTATTTAAGCATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCATCCACTTCTTGTGTGCACTATTCCAACTTTATTTAAGCATA  294

seq1  TTCTACAAGATCAGTCGTTGGAGAACTCTATTTTTTCCTGCTTTGTCTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAAGATCAGTCGTTGGAGAACTCTATTTTTTCCTGCTTTGTCTTA  344

seq1  CAGAAAAATATCCATTGTTTATACATAATAGAGATGCATGAATGAATGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATATCCATTGTTTATACATAATAGAGATGCATGAATGAATGTT  394

seq1  TATTTCTGTCTCACTGATCCTTGCTCACTGGTAATCCTAAAAACATTATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTCTCACTGATCCTTGCTCACTGGTAATCCTAAAAACATTATC  444

seq1  TCAACTAATATAATACTGTAAAAGAATATAGTCCATTGACATGGTTTGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAATATAATACTGTAAAAGAATATAGTCCATTGACATGGTTTGTT  494

seq1  TTATGTGAACCAGGTAAATGTAAGTAAAATAATAATAACAATAATTTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAACCAGGTAAATGTAAGTAAAATAATAATAACAATAATTTGTA  544

seq1  ACTATCCTAATTATTGTTGCCTTAAAAAGGAAAGCACTGACTTTGGTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTAATTATTGTTGCCTTAAAAAGGAAAGCACTGACTTTGGTCAA  594

seq1  GTCCTCCTCACAGAGTAACTAAATTATTAAAAACAAGAGACATGACTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTCACAGAGTAACTAAATTATTAAAAACAAGAGACATGACTGTT  644

seq1  CTTTCCTTTGTCCATATTTGTAATTAGTGGAAAAACAACCACACTCCCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTGTCCATATTTGTAATTAGTGGAAAAACAACCACACTCCCCC  694

seq1  GTCCCCTGGAGTATAATCCTTTGCAATATTATTATTTTTGGAGTGCTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGGAGTATAATCCTTTGCAATATTATTATTTTTGGAGTGCTTTA  744

seq1  CTACCCTATTTGGACCGTTTTTCTCAGTTGGAACAAATATAAAAAGGAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTATTTGGACCGTTTTTCTCAGTTGGAACAAATATAAAAAGGAAG  794

seq1  AATGAATTGGATTGAGAAATTTCAGAGAATAACCCAGGGACCAACACTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTGGATTGAGAAATTTCAGAGAATAACCCAGGGACCAACACTTT  844

seq1  CAGAATTGTTCCTGTGGATGTTCCCATGAATTTAATGATATGTTATTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGTTCCTGTGGATGTTCCCATGAATTTAATGATATGTTATTTTG  894

seq1  TTCTTTTATGAATTATTCGAATTCCAGCATTCAATACTCAAGGGCTTAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATGAATTATTCGAATTCCAGCATTCAATACTCAAGGGCTTAGT  944

seq1  CTGAAAATCCTAATGTAGTCATGATTATAATAAGAAAAAATTGGGAAGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATCCTAATGTAGTCATGATTATAATAAGAAAAAATTGGGAAGGT  994

seq1  GGCTTAATGAGATTAGTTTAGAAAGCAATATAGAGAAAAATTAATACTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAATGAGATTAGTTTAGAAAGCAATATAGAGAAAAATTAATACTGT  1044

seq1  TGAATTTTATTTTTAACTTTCTAGTTATTATAAAAGAAAATGGAGAAACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTATTTTTAACTTTCTAGTTATTATAAAAGAAAATGGAGAAACA  1094

seq1  CTTTCAGGGACAGAATAAAGAATGAATTC  1127
      |||||||||||||||||||||||||||||
seq2  CTTTCAGGGACAGAATAAAGAATGAATTC  1123


seq1: chr14_109987034_109987878
seq2: B6Ng01-327C17.g_64_910

seq1  GAATTCATCCTTTTATCATTTTGTTAGGCTAAATTGGTTAAAGTTTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTTTTATCATTTTGTTAGGCTAAATTGGTTAAAGTTTATGA  50

seq1  ACTTTTGGCAGGCTTGCACAAAGATGTGCTGTAAAAAGATTACACCGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGCAGGCTTGCACAAAGATGTGCTGTAAAAAGATTACACCGTAT  100

seq1  ATAACAGATCTATTTCCAGAGGTTTATTGGAGAAGTGGGGGATGGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGATCTATTTCCAGAGGTTTATTGGAGAAGTGGGGGATGGAAGGC  150

seq1  TTCTGGGAGTGAGGGCATGACAGGTAGAGACAGACAGACAGACATACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAGTGAGGGCATGACAGGTAGAGACAGACAGACAGACATACCAA  200

seq1  GAGGCAAACAGAAAGAGACAGAATGAAGAGGACCCAGAACAAGAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAACAGAAAGAGACAGAATGAAGAGGACCCAGAACAAGAAAGAGA  250

seq1  AAAGTGGACACAGAGAGGGGTCAGGGGTGGGGAATGTGTAATACCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGACACAGAGAGGGGTCAGGGGTGGGGAATGTGTAATACCCAGAG  300

seq1  GTTCTTTAAAAGAATGCATGTGTAGTTAGCAACTCCTAATGACAGTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTAAAAGAATGCATGTGTAGTTAGCAACTCCTAATGACAGTGTAA  350

seq1  ATGCATGCATCTAGTTGCAGCAGGTGATGACATAAGCTGCTCAAGTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCATCTAGTTGCAGCAGGTGATGACATAAGCTGCTCAAGTTGCT  400

seq1  GCTTCTTAGTTGCTAAAAGGTAGGCCACCAGGAAACCACTATATCTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTAGTTGCTAAAAGGTAGGCCACCAGGAAACCACTATATCTACAA  450

seq1  AAATGCTCCCAATTTGAGAATGTTTAATTGAAAGAGATATACTTAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCCCAATTTGAGAATGTTTAATTGAAAGAGATATACTTAGAATT  500

seq1  TGGCATAATACTTGTGTTGATTTTTCTTTACTTCCAGGAAGAAAGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAATACTTGTGTTGATTTTTCTTTACTTCCAGGAAGAAAGAAAGA  550

seq1  GAGAGAGAGAAAAAAAACATGTTAACAAAGTTGAAAGGTAGTTTATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAAAAAAAACATGTTAACAAAGTTGAAAGGTAGTTTATCTTT  600

seq1  TTACCCCCTAATTAGAATAAAAGCATATTAGTCACTAAGTGTATAAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCCTAATTAGAATAAAAGCATATTAGTCACTAAGTGTATAAGTGA  650

seq1  GATTATATTAAAGTTGGATCTTTTCTATCATAGGGGAGTTAACGAGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATTAAAGTTGGATCTTTTCTATCATAGGGGAGTTAACGAGGATG  700

seq1  GTGAGAAGGATAGAGACAAATAGGCAGGCAAATGTGATAGAGGTGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAGGATAGAGACAAATAGGCAGGCAAATGTGATAGAGGTGTTTGA  750

seq1  TGTGAAATCTCCAAAGAATCAATAAAAATGTATGGTTGGAAAAGAAAATA  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGAAATCTCCAAAGAATCATTAAAAATGTATGGTTGGAAAAGAAAATA  800

seq1  AATATAGAATGACACA-GTTCTTAATAAAATTCAGGTG-GGGAAAGA  845
       |||||||||||||||  |||||||||||||||||||| ||||||||
seq2  TATATAGAATGACACATCTTCTTAATAAAATTCAGGTGTGGGAAAGA  847


| Home | SequenceCutter | Blast | Download |