BAC Information

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BAC

Clone NameB6Ng01-329L16
Chromosome14 (Build37)
Map Location 49,177,951 - 49,318,695
singlet/doubletdoublet
Overlap gene4930572G02Rik, Otx2, LOC100041864
Upstream geneD14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik
Downstream geneLOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329L16.bB6Ng01-329L16.g
ACCGA116607GA116608
length4891,123
definitionB6Ng01-329L16.b B6Ng01-329L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,177,951 - 49,178,445)(49,317,576 - 49,318,695)
sequence
cagtcagtgaacccctcgagtgtgaggtgaataaaacatgtccgccagcg
gtggggcttccttgactggaatccactcgtgttgtgtaaggtcggcagcg
caagttcagatgttatctttagagggctcgagcatccagatctgctgtca
taacagtaatcgccaaacaaccgatccgtttgccggcccgtgaggaaggt
ctgggctatctctcctgtctcttctacctggctcacaatgaccaggcctc
tgttgtgtgctggagatttgctggcaggcagctgcttgctacaatgaggt
tctctcacagtcaagttttatctgcttcttgcaagctctgattcacagtc
acacacaaaaactgatcccagaacgtattatactgtggctctacttctgt
caagcccctaaagttaaaatggacttaggattttttgtttgtttgtttgc
cattgttgtttggttggttttattttggaggtggggaag
gaattcactctgtggaagaaattggccctcactcacaaatatctgtctgc
ctctgcttcctgagttctgggattaaaggcgtgtaccatcgctgtctggc
tgcagtatgtgctcttagctgaaccctctctccagcctcttactttattt
ataattttatacttctgaacattcttttatttattgtttaatttcattcc
ctcttccatcaggaaataaaaatgtacatcatctgagcaagaatctaaaa
tatggattctaaaagaaagtgacagccaggcttttgacctgaccaggcag
acatgtcatggtagcctagtggatagcacactagttgtagagtccagcgg
agggaagattctgagccttctacttgaggcctcaaacacttccagtgtct
gcttcagtagctacagaattagataagatgaggtcatgtgggctggagac
ctggctcagcaggtaagagcaccaactgctcttccaaaggtcctgagttc
aaatcccagcaaccacatggtggctcacaaccacccataatgagatctga
cgttctcttctggagtacagtgtacttgcatataattaataaataaatct
taaaaaaaaaagatgaggtcatgtaaaatacttgaaacagtggccagcat
gtttcaggggctcaagaaatatgacctcacggggcagtggtgatgcacgc
ctttaatcccagcacttgggaagcagaggcaggcggatttctgagttcga
ggccagcctggtttacagaatgagttccaagacagccagggctacacaga
gaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaggaagaaagga
agaggagatgacctctctctctgatgtttaatttcatacaatatagaaac
caaatctatagaatcagaaatctgtgtctacctaaccccgaagaacactt
tgctaggagggaggcaggccagtaacttcctaccctttcctctttgctca
gctgccacattgccttgcctgttgccttctgatccctacaagcttacaga
aacagagagaacttgagtgaagacagtgtggggacacctccaccctcccc
taatcatcgtcaacaccttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49177951_49178445
seq2: B6Ng01-329L16.b_47_541

seq1  GAATTCCAGTCAGTGAACCCCTCGAGTGTGAGGTGAATAAAACATGTCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCAGTGAACCCCTCGAGTGTGAGGTGAATAAAACATGTCCG  50

seq1  CCAGCGGTGGGGCTTCCTTGACTGGAATCCACTCGTGTTGTGTAAGGTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGGTGGGGCTTCCTTGACTGGAATCCACTCGTGTTGTGTAAGGTCG  100

seq1  GCAGCGCAAGTTCAGATGTTATCTTTAGAGGGCTCGAGCATCCAGATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGCAAGTTCAGATGTTATCTTTAGAGGGCTCGAGCATCCAGATCTG  150

seq1  CTGTCATAACAGTAATCGCCAAACAACCGATCCGTTTGCCGGCCCGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATAACAGTAATCGCCAAACAACCGATCCGTTTGCCGGCCCGTGAG  200

seq1  GAAGGTCTGGGCTATCTCTCCTGTCTCTTCTACCTGGCTCACAATGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTGGGCTATCTCTCCTGTCTCTTCTACCTGGCTCACAATGACCA  250

seq1  GGCCTCTGTTGTGTGCTGGAGATTTGCTGGCAGGCAGCTGCTTGCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGTTGTGTGCTGGAGATTTGCTGGCAGGCAGCTGCTTGCTACAA  300

seq1  TGAGGTTCTCTCACAGTCAAGTTTTATCTGCTTCTTGCAAGCTCTGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCTCTCACAGTCAAGTTTTATCTGCTTCTTGCAAGCTCTGATTC  350

seq1  ACAGTCACACACAAAAACTGATCCCAGAACGTATTATACTGTGGCTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACACACAAAAACTGATCCCAGAACGTATTATACTGTGGCTCTAC  400

seq1  TTCTGTCAAGCCCCTAAAGTTAAAATGGACTTAGGATTTTTTGTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAAGCCCCTAAAGTTAAAATGGACTTAGGATTTTTTGTTTGTTT  450

seq1  GTTTGCCATTGTTGTTTGGTTGGTTTTATTTTGGAGGTGGGGAAG  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCATTGTTGTTTGGTTGGTTTTATTTTGGAGGTGGGGAAG  495

seq1: chr14_49317576_49318695
seq2: B6Ng01-329L16.g_64_1186 (reverse)

seq1  TCTGAAGTTGTTTGAAGATGATTAGAGGA-GGTG--AGTGTCCCCACACT  47
      ||||||| || |||| ||||||||| ||| ||||   |||||||||||||
seq2  TCTGAAGGTG-TTGACGATGATTAGGGGAGGGTGGAGGTGTCCCCACACT  49

seq1  GTCCTCACTC-AGGTCTCTCTTGTTCTGT-AGCTGGTAGGGATTCAGAA-  94
      ||| |||||| || |||||||  |||||| |||| ||||||| |||||| 
seq2  GTCTTCACTCAAGTTCTCTCTGTTTCTGTAAGCTTGTAGGGA-TCAGAAG  98

seq1  GCAACAGGGCAGGGCAATGTGGCAGCTGAGCAAAGA-GAAAGGGTAGGAA  143
      |||||| |||| |||||||||||||||||||||||| |||||||||||||
seq2  GCAACA-GGCAAGGCAATGTGGCAGCTGAGCAAAGAGGAAAGGGTAGGAA  147

seq1  GTTACTGCCCTGCCTCCCT-CTAGCAAAGTGTTCTTCGGGGTTAGGTAGA  192
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTACTGGCCTGCCTCCCTCCTAGCAAAGTGTTCTTCGGGGTTAGGTAGA  197

seq1  CACAGATTTCTGATTCTATAGATTTGGTTTCTATATTGTATTGAAATTAA  242
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACAGATTTCTGATTCTATAGATTTGGTTTCTATATTGTA-TGAAATTAA  246

seq1  ACATCAGAGAGAGAGGTCATCTTCCTCTTCCTTTCTTCCTTTTTTTTTTT  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACATCAGAGAGAGAGGTCATC-TCCTCTTCCTTTCTTCCTTTTTTTTTTT  295

seq1  TTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTT  345

seq1  GGAACTCATTCTGTAAACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCATTCTGTAAACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGC  395

seq1  CTCTGCTTCCCAAGTGCTGGGATTAAAGGCGTGCATCACCACTGCCCCGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCCCAAGTGCTGGGATTAAAGGCGTGCATCACCACTGCCCCGT  445

seq1  GAGGTCATATTTCTTGAGCCCCTGAAACATGCTGGCCACTGTTTCAAGTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATATTTCTTGAGCCCCTGAAACATGCTGGCCACTGTTTCAAGTA  495

seq1  TTTTACATGACCTCATCTTTTTTTTTTAAGATTTATTTATTAATTATATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATGACCTCATCTTTTTTTTTTAAGATTTATTTATTAATTATATG  545

seq1  CAAGTACACTGTACTCCAGAAGAGAACGTCAGATCTCATTATGGGTGGTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACACTGTACTCCAGAAGAGAACGTCAGATCTCATTATGGGTGGTT  595

seq1  GTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAG  645

seq1  CAGTTGGTGCTCTTACCTGCTGAGCCAGGTCTCCAGCCCACATGACCTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTGCTCTTACCTGCTGAGCCAGGTCTCCAGCCCACATGACCTCA  695

seq1  TCTTATCTAATTCTGTAGCTACTGAAGCAGACACTGGAAGTGTTTGAGGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTAATTCTGTAGCTACTGAAGCAGACACTGGAAGTGTTTGAGGC  745

seq1  CTCAAGTAGAAGGCTCAGAATCTTCCCTCCGCTGGACTCTACAACTAGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTAGAAGGCTCAGAATCTTCCCTCCGCTGGACTCTACAACTAGTG  795

seq1  TGCTATCCACTAGGCTACCATGACATGTCTGCCTGGTCAGGTCAAAAGCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCACTAGGCTACCATGACATGTCTGCCTGGTCAGGTCAAAAGCC  845

seq1  TGGCTGTCACTTTCTTTTAGAATCCATATTTTAGATTCTTGCTCAGATGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCACTTTCTTTTAGAATCCATATTTTAGATTCTTGCTCAGATGA  895

seq1  TGTACATTTTTATTTCCTGATGGAAGAGGGAATGAAATTAAACAATAAAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTTTTATTTCCTGATGGAAGAGGGAATGAAATTAAACAATAAAT  945

seq1  AAAAGAATGTTCAGAAGTATAAAATTATAAATAAAGTAAGAGGCTGGAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGTTCAGAAGTATAAAATTATAAATAAAGTAAGAGGCTGGAGA  995

seq1  GAGGGTTCAGCTAAGAGCACATACTGCAGCCAGACAGCGATGGTACACGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCAGCTAAGAGCACATACTGCAGCCAGACAGCGATGGTACACGC  1045

seq1  CTTTAATCCCAGAACTCAGGAAGCAGAGGCAGACAGATATTTGTGAGTGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGAACTCAGGAAGCAGAGGCAGACAGATATTTGTGAGTGA  1095

seq1  GGGCCAATTTCTTCCACAGAGTGAATTC  1120
      ||||||||||||||||||||||||||||
seq2  GGGCCAATTTCTTCCACAGAGTGAATTC  1123