BAC Information

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BAC

Clone NameB6Ng01-329P20
Chromosome14 (Build37)
Map Location 118,454,325 - 118,625,794
singlet/doubletdoublet
Overlap geneTgds, Gpr180, LOC100043824, LOC100043539
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct
Downstream geneSox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329P20.bB6Ng01-329P20.g
ACCGA116794GA116795
length1,0901,051
definitionB6Ng01-329P20.b B6Ng01-329P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,624,713 - 118,625,794)(118,454,325 - 118,455,364)
sequence
gaattctcataggaagttgaaaaggacttcctttttaaggaaagcgcaga
ccttccattccagaaaaatctatattgcctcgggttagacccttaggaca
ttccgaagatgacaccccccacccccacccccacccccagcagccaaggt
cagactgggtggtgagaagccggagccaactgcttccttctgcttctaac
tttccttttccgaaactgggttttctcctaagttacatacatacatacat
acatacatacatacatacatacatacatacatacatacacaaacaaacct
tagacttgagttagtagttcgagcggttgatgaatatgtatgagaacccg
gctgtttaaggagcgtgaataaacatgagcgggtgtatcctctcgctaag
catcgccagctcggagggaacagagtccctgcaacttcgcttattccgga
ttgccgcggtgctgagccggccgcctgagcttgagcgagtctctgtgcgc
cccgcacttggcacacaccccaaggggcacggatcagtgcacgctggctc
ccggatcttcggatacagttttctttctcccaagttttgagcccatgtta
caataaagaaagagttgctgagcagaggcacccaatctatgtttcctgcc
atcaaagccacctgaaaaagcgggggtaaaagcgtccatctgtgcatctc
agggagcagggtgtgttcccgcaaggcgcttgttttccgttgtctgtgga
cccatgaatgtccacgaaggataatcgcccaccattaaccttcccaaacc
ctcgtcttctcccgcaggggaaaaggccctggtgtgtgcccatcctgaag
tcactgcgccttggtctttggaacctatgagacaagagcaagccttggca
gcttccttcagcctcaacgtctccgtgtctctcgtgaacacactttttgg
taacttacgtgggattacatcgagtgccttcagctccttgctttagatct
ggagagtcagactgcggaagtcttcagtgtgccttggaccaggttctggc
agaaaccaacccagataaacccgcagcagccctttgggcc
gaattcattgtgatacttcaaaataaggaaaagaagaaaacattcctctt
tatgatttttttatgtatatgtgtgtgagtctaggtgaatgtataggcac
tgcttctcagagaccagaagagagcatcaaatgacctgagacaggagtta
caggaagttgggagtcaccatcttgatattgggaatggaacctaggtcct
ctgcaagaacagcacgtgatcttaaccaccgaaccatcttctcagccctg
tggaaatgtaggtttcttaatctcctactctatgccaggtactgacctag
gcttgcttctttacccgctgtcatctcatttaaaccacaaagaggggcta
ggggtgtagctcagttagtagagatcttgcctctcacgtgtgcagccttg
ggttcaatcccaacacctcaggacgcaggcatgaatgacagtacacgtca
cacagcacttgcggtgtggaggtagctgacctcagggccatcctcagaaa
cacagcaagtcaagccagcctgggctacctgaggccctgtctctaaacga
acaagcaaacctaaaggaacgtctccttgaaatttaggtgtttctagtag
aaattattttaacagtgctacgcaatggaggcagctcgttgcaattgaga
acaaaggatctttgcctgttgtaatggtgcatgccaatagggctttccga
aggaggcagaggcaggaggatcacgagtttgagaataaggatccagcccc
tccagcttgtcatgaactgaattactcttggtgtcaagaattgttcagcc
tacattaaagtctgttataaggaagttatcattgtggcccttgaaggctt
atgaaaatcatcttatatgccttcctcccctgggaggaaatttcctctgt
ccagcctaagtaaccctgcactcctggggctccaggcctgccctgacttt
caagcttgggacctctctcatattaacgtctgtcctttgccttggccaag
gtggaacgttccaccttatagacctcacatgcacacctcaatcgcatgac
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118624713_118625794
seq2: B6Ng01-329P20.b_46_1135 (reverse)

seq1  GGCCCAAAGGCCTGCTGCGGGTTTTATCT-GGTTGG-TTCTGCCAG-ACC  47
      |||||||||| |||||||||| ||||||| |||||| ||||||||| |||
seq2  GGCCCAAAGGGCTGCTGCGGG-TTTATCTGGGTTGGTTTCTGCCAGAACC  49

seq1  TGGTCCAAGGCCACACTG-AGACTTCCGCAGTCTGACTCT-CAGATCT-A  94
      |||||||||| ||||||| ||||||||||||||||||||| ||||||| |
seq2  TGGTCCAAGG-CACACTGAAGACTTCCGCAGTCTGACTCTCCAGATCTAA  98

seq1  AGC-AGGAGCTG-AGGCACTCGATGTAAT-CCACGTAAGTTACC-AAAAG  140
      ||| |||||||| |||||||||||||||| |||||||||||||| |||||
seq2  AGCAAGGAGCTGAAGGCACTCGATGTAATCCCACGTAAGTTACCAAAAAG  148

seq1  TGTGTTCACGAGAGACACGGAGACGTTGAGGCTGAGGGAAGCTGCCAAGG  190
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGTTCACGAGAGACACGGAGACGTTGAGGCTGAAGGAAGCTGCCAAGG  198

seq1  CTTGCTCTTGTCTCATAGGTTCCAAAGACCAAGGCGCAGTGACTTCAGGA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTTGTCTCATAGGTTCCAAAGACCAAGGCGCAGTGACTTCAGGA  248

seq1  TGGGCACACACCAGGGCCTTTTCCCCTGCGGGAGAAGACGAGGGTTTGGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACACACCAGGGCCTTTTCCCCTGCGGGAGAAGACGAGGGTTTGGG  298

seq1  AAGGTTAATGGTGGGCGATTATCCTTCGTGGACATTCATGGGTCCACAGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAATGGTGGGCGATTATCCTTCGTGGACATTCATGGGTCCACAGA  348

seq1  CAACGGAAAACAAGCGCCTTGCGGGAACACACCCTGCTCCCTGAGATGCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGAAAACAAGCGCCTTGCGGGAACACACCCTGCTCCCTGAGATGCA  398

seq1  CAGATGGACGCTTTTACCCCCGCTTTTTCAGGTGGCTTTGATGGCAGGAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGACGCTTTTACCCCCGCTTTTTCAGGTGGCTTTGATGGCAGGAA  448

seq1  ACATAGATTGGGTGCCTCTGCTCAGCAACTCTTTCTTTATTGTAACATGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATTGGGTGCCTCTGCTCAGCAACTCTTTCTTTATTGTAACATGG  498

seq1  GCTCAAAACTTGGGAGAAAGAAAACTGTATCCGAAGATCCGGGAGCCAGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAACTTGGGAGAAAGAAAACTGTATCCGAAGATCCGGGAGCCAGC  548

seq1  GTGCACTGATCCGTGCCCCTTGGGGTGTGTGCCAAGTGCGGGGCGCACAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGATCCGTGCCCCTTGGGGTGTGTGCCAAGTGCGGGGCGCACAG  598

seq1  AGACTCGCTCAAGCTCAGGCGGCCGGCTCAGCACCGCGGCAATCCGGAAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGCTCAAGCTCAGGCGGCCGGCTCAGCACCGCGGCAATCCGGAAT  648

seq1  AAGCGAAGTTGCAGGGACTCTGTTCCCTCCGAGCTGGCGATGCTTAGCGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAAGTTGCAGGGACTCTGTTCCCTCCGAGCTGGCGATGCTTAGCGA  698

seq1  GAGGATACACCCGCTCATGTTTATTCACGCTCCTTAAACAGCCGGGTTCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATACACCCGCTCATGTTTATTCACGCTCCTTAAACAGCCGGGTTCT  748

seq1  CATACATATTCATCAACCGCTCGAACTACTAACTCAAGTCTAAGGTTTGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATTCATCAACCGCTCGAACTACTAACTCAAGTCTAAGGTTTGT  798

seq1  TTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT  848

seq1  ATGTATGTAACTTAGGAGAAAACCCAGTTTCGGAAAAGGAAAGTTAGAAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTAACTTAGGAGAAAACCCAGTTTCGGAAAAGGAAAGTTAGAAG  898

seq1  CAGAAGGAAGCAGTTGGCTCCGGCTTCTCACCACCCAGTCTGACCTTGGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAAGCAGTTGGCTCCGGCTTCTCACCACCCAGTCTGACCTTGGC  948

seq1  TGCTGGGGGTGGGGGTGGGGGTGGGGGGTGTCATCTTCGGAATGTCCTAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGGTGGGGGTGGGGGTGGGGGGTGTCATCTTCGGAATGTCCTAA  998

seq1  GGGTCTAACCCGAGGCAATATAGATTTTTCTGGAATGGAAGGTCTGCGCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAACCCGAGGCAATATAGATTTTTCTGGAATGGAAGGTCTGCGCT  1048

seq1  TTCCTTAAAAAGGAAGTCCTTTTCAACTTCCTATGAGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAAAGGAAGTCCTTTTCAACTTCCTATGAGAATTC  1090

seq1: chr14_118454325_118455364
seq2: B6Ng01-329P20.g_65_1115

seq1  GAATTCATTGTGATACTTCAAAATAAGGAAAAGAAGAAAACATTCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGATACTTCAAAATAAGGAAAAGAAGAAAACATTCCTCTT  50

seq1  TATGATTTTTTTATGTATATGTGTGTGAGTCTAGGTGAATGTATAGGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTTTTATGTATATGTGTGTGAGTCTAGGTGAATGTATAGGCAC  100

seq1  TGCTTCTCAGAGACCAGAAGAGAGCATCAAATGACCTGAGACAGGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCAGAGACCAGAAGAGAGCATCAAATGACCTGAGACAGGAGTTA  150

seq1  CAGGAAGTTGGGAGTCACCATCTTGATATTGGGAATGGAACCTAGGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTTGGGAGTCACCATCTTGATATTGGGAATGGAACCTAGGTCCT  200

seq1  CTGCAAGAACAGCACGTGATCTTAACCACCGAACCATCTTCTCAGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAACAGCACGTGATCTTAACCACCGAACCATCTTCTCAGCCCTG  250

seq1  TGGAAATGTAGGTTTCTTAATCTCCTACTCTATGCCAGGTACTGACCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTAGGTTTCTTAATCTCCTACTCTATGCCAGGTACTGACCTAG  300

seq1  GCTTGCTTCTTTACCCGCTGTCATCTCATTTAAACCACAAAGAGGGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTCTTTACCCGCTGTCATCTCATTTAAACCACAAAGAGGGGCTA  350

seq1  GGGGTGTAGCTCAGTTAGTAGAGATCTTGCCTCTCACGTGTGCAGCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTAGCTCAGTTAGTAGAGATCTTGCCTCTCACGTGTGCAGCCTTG  400

seq1  GGTTCAATCCCAACACCTCAGGACGCAGGCATGAATGACAGTACACGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATCCCAACACCTCAGGACGCAGGCATGAATGACAGTACACGTCA  450

seq1  CACAGCACTTGCGGTGTGGAGGTAGCTGACCTCAGGGCCATCCTCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACTTGCGGTGTGGAGGTAGCTGACCTCAGGGCCATCCTCAGAAA  500

seq1  CACAGCAAGTCAAGCCAGCCTGGGCTACCTGAGGCCCTGTCTCTAAACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAGTCAAGCCAGCCTGGGCTACCTGAGGCCCTGTCTCTAAACGA  550

seq1  ACAAGCAAACCTAAAGGAACGTCTCCTTGAAATTTAGGTGTTTCTAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAACCTAAAGGAACGTCTCCTTGAAATTTAGGTGTTTCTAGTAG  600

seq1  AAATTATTTTAACAGTGCTACGCAATGGAGGCAGCTCGTTGCAATTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTAACAGTGCTACGCAATGGAGGCAGCTCGTTGCAATTGAGA  650

seq1  ACAAGGGATCTTTGCCTGTTGTAATGGTGCATGCCAATAGGGCTTTCCGA  700
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATCTTTGCCTGTTGTAATGGTGCATGCCAATAGGGCTTTCCGA  700

seq1  AGGAGGCAGAGGCAGGAGGATCACGAGTTTGAGAATAAGGGATCCAGCCC  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGAGGCAGAGGCAGGAGGATCACGAGTTTGAGAATAA-GGATCCAGCCC  749

seq1  CTCCAGCTTGTCATGAACTGAATTACTCTTGGTGTCAAGA--TG-TCAGC  797
      ||||||||||||||||||||||||||||||||||||||||  || |||||
seq2  CTCCAGCTTGTCATGAACTGAATTACTCTTGGTGTCAAGAATTGTTCAGC  799

seq1  CTACATTAAAGTCTGTTATAAGGAAG-TATCA-TGTGGCCCT--GAGGCT  843
      |||||||||||||||||||||||||| ||||| |||||||||   |||||
seq2  CTACATTAAAGTCTGTTATAAGGAAGTTATCATTGTGGCCCTTGAAGGCT  849

seq1  TATG-AAATCATCTAATATGC--TTCTCAC--TGGAGGAA--TTTCTCTG  886
      |||| ||||||||| ||||||  | ||| |   |||||||  || |||||
seq2  TATGAAAATCATCTTATATGCCTTCCTCCCCTGGGAGGAAATTTCCTCTG  899

seq1  T-CAGCCT-AGTAACACTGCACTTCCTTGGGGCTCCA-GCCTGCCCTGGA  933
      | |||||| |||||| |||||||  | |||||||||| ||||||||| ||
seq2  TCCAGCCTAAGTAACCCTGCACT--CCTGGGGCTCCAGGCCTGCCCT-GA  946

seq1  CCTTCCAGCCTGGGGACTCTTCCATATT-ACGTTTCTGT-CTTTGCCTTT  981
      | ||| ||| ||||  ||||  |||||| |||  ||||| ||||||||| 
seq2  CTTTCAAGCTTGGGACCTCTCTCATATTAACG--TCTGTCCTTTGCCTTG  994

seq1  GCC-AGGTTGACAGTTCCACACCTATAGACCTCACAATGCACACCTAACT  1030
      ||| |||| ||  ||||||| | |||||||||||| |||||||||| | |
seq2  GCCAAGGTGGAACGTTCCAC-CTTATAGACCTCAC-ATGCACACCTCAAT  1042

seq1  CGGCATGACC  1040
      | ||||||||
seq2  C-GCATGACC  1051