BAC Information

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BAC

Clone NameB6Ng01-331A20
Chromosome14 (Build37)
Map Location 37,867,009 - 37,912,304
singlet/doubletdoublet
Overlap geneLrrc21, Lrrc22, Pcdh21
Upstream geneLOC665933, 4930474N05Rik, Gcap14, LOC100040341, LOC670331, Rgr
Downstream gene2610528A11Rik, Ghitm, LOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331A20.bB6Ng01-331A20.g
ACCGA117527GA117528
length1,0631,116
definitionB6Ng01-331A20.b B6Ng01-331A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,867,009 - 37,868,076)(37,911,190 - 37,912,304)
sequence
gaattcagaggaccaagtattctgagacagaaaaatgaagccagcaagcg
ggtgacttaagaagtctagtattcagtcctgcctgtcatcttgagaagga
tcttacaggatggggttggagaagagaaaacaaataaaatttccaaaacc
tctgcaagatccagcactaggaccctccctcgtgtatgacgcttgaggaa
gggataccgttcctctcttgtagtgattccttttgttttcagtgtgggtg
gtagtgcctcaaaggttaccaactgacatcctagggttctgcgaccgggt
gcccatgaggcattaagggaaagcaggtgtttgcctatgctcatgagcat
agatgggcacctttaatgtctccttgtaatgtcagaatcttcccagctcc
tctgtgaacacgtacgtgcctgtaagtgccagaaattgacagttttcaga
aaggttctgtcccctcagcagtcagagatgggcaagcctgggctaatttt
caccagtattccaggtggaaagctttatttccttttgtgactgacgatct
gagatcggaatacaggtgtcaggccctgaaacatggactctttctaatgc
ctccacaaccttcagaaggcctcgcttcatgttactcttctttttcagag
actatcgtaggggacaatttttagaggcccttatttagaggccagagttc
tgtttctatttttttcctgagcctagcaccccaagcacacagatttatta
cccctggcctggttgaaatggagttctttgcaagcagccagtcactagtc
acttgcctctgggcagctgcccatctgccttatctttctgtgccctagct
tcttctggcctggggttgatgctatagagggattctctccctcccctcaa
gactgggtgattcagcatcagtaagctgctgagtgctagggctggggctc
ccttccctaatccccagcctgtgtttatccatggcctggatggggttgct
gagtgatgagcaagtgggtagccgttggacttactggacagcagacagag
catctctgggaca

aagagttgatctgggaggcttggatcaaggggtataggtgctctgcttcc
ttgaggtaccccaggaagagaggattctgggacctccagggaacttacag
agggtctcctttgtctaagggcacagcatcacaggggcaactttgaaagc
aacctgggttcaagttattactcaagttggggggaatacctcatcccaat
tgatgaatggcccaaaaggagtagggtacaagggatatctccgcccacat
tccagtgttagagaagaaggaggattcaagccaggaagagccttggactt
ttcctgcgttcctacaccatttcggacatcactctctacccttgttcttt
tggtctgactcaaaactaaagaacgtatttgaattggcaaggcaatgccg
ctttcttttctcccaatgtcttcccctccatcctgagagagctgtttttc
tgctcattgttttatttccaggagtactttgatcagagaggtcttggcac
ccgtgaaagccacaaaacaagttaaacaaatcaggaaaatccctgcgcag
cctgagccacaccaaaccacagcaaatcccgaatttctggtggcttgctc
aaaagtagtctggggatgcctatttgtttctctgtgcagagctccacctc
tgcacctggtgctcctgggttgctagggcagactgggcgtggtaggagag
aggtagtcttgtcacgccctcccacccgccgctataagctggtcccagta
attggtctcattagtaacctgaccggagccatccagctgtgaggatctgt
gagcgctgtcatccgcttaacgccctcgcaccacccgctctccctccctt
ccgccaccgccgccgccgcagtcacccacaacgttccctctgctctcatc
cagcgcccagggcatgctccgaggtccagcacccggcctcggcagtgccc
aggctttcgaccctttccgcggagacatgaggcgtggcccacgggtcgcc
ctggtcctggggctgctgcgcatttaccctaggtgagtagcaaggtcctg
gtagggtgggtgtctgtgctcccttagggatgagggacagagctgccacc
tgttcagttgccgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_37867009_37868076
seq2: B6Ng01-331A20.b_44_1106

seq1  GAATTCAGAGGACCAAGTATTCTGAGACAGAAAAATGAAGCCAGCAAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGACCAAGTATTCTGAGACAGAAAAATGAAGCCAGCAAGCG  50

seq1  GGTGACTTAAGAAGTCTAGTATTCAGTCCTGCCTGTCATCTTGAGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTAAGAAGTCTAGTATTCAGTCCTGCCTGTCATCTTGAGAAGGA  100

seq1  TCTTACAGGATGGGGTTGGAGAAGAGAAAACAAATAAAATTTCCAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGGATGGGGTTGGAGAAGAGAAAACAAATAAAATTTCCAAAACC  150

seq1  TCTGCAAGATCCAGCACTAGGACCCTCCCTCGTGTATGACGCTTGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGATCCAGCACTAGGACCCTCCCTCGTGTATGACGCTTGAGGAA  200

seq1  GGGATACCGTTCCTCTCTTGTAGTGATTCCTTTTGTTTTCAGTGTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACCGTTCCTCTCTTGTAGTGATTCCTTTTGTTTTCAGTGTGGGTG  250

seq1  GTAGTGCCTCAAAGGTTACCAACTGACATCCTAGGGTTCTGCGACCGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCCTCAAAGGTTACCAACTGACATCCTAGGGTTCTGCGACCGGGT  300

seq1  GCCCATGAGGCATTAAGGGAAAGCAGGTGTTTGCCTATGCTCATGAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGAGGCATTAAGGGAAAGCAGGTGTTTGCCTATGCTCATGAGCAT  350

seq1  AGATGGGCACCTTTAATGTCTCCTTGTAATGTCAGAATCTTCCCAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCACCTTTAATGTCTCCTTGTAATGTCAGAATCTTCCCAGCTCC  400

seq1  TCTGTGAACACGTACGTGCCTGTAAGTGCCAGAAATTGACAGTTTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAACACGTACGTGCCTGTAAGTGCCAGAAATTGACAGTTTTCAGA  450

seq1  AAGGTTCTGTCCCCTCAGCAGTCAGAGATGGGCAAGCCTGGGCTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTGTCCCCTCAGCAGTCAGAGATGGGCAAGCCTGGGCTAATTTT  500

seq1  CACCAGTATTCCAGGTGGAAAGCTTTATTTCCTTTTGTGACTGACGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTATTCCAGGTGGAAAGCTTTATTTCCTTTTGTGACTGACGATCT  550

seq1  GAGATCGGAATACAGGTGTCAGGCCCTGAAACATGGACTCTTTCTAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCGGAATACAGGTGTCAGGCCCTGAAACATGGACTCTTTCTAATGC  600

seq1  CTCCACAACCTTCAGAAGGCCTCGCTTCATGTTACTCTTCTTTTTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAACCTTCAGAAGGCCTCGCTTCATGTTACTCTTCTTTTTCAGAG  650

seq1  ACTATCGTAGGGGACAATTTTTAGAGGCCCTTATTTAGAGGCCAGAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCGTAGGGGACAATTTTTAGAGGCCCTTATTTAGAGGCCAGAGTTC  700

seq1  TGTTTCTATTTTTTTCCTGAGCCTAGCACCCCAAGCACACAGATTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATTTTTTTCCTGAGCCTAGCACCCCAAGCACACAGATTTATTA  750

seq1  CCCCTGGCCTGGTTGAAATGGAGTTCTTTGCAAGCAGCCAGTCACTAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCCTGGTTGAAATGGAGTTCTTTGCAAGCAGCCAGTCACTAGTC  800

seq1  ACTTGCCTCTGGGCAGCTGCCCATCTGCCTTATCTTTCTGTGCCCTAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTCTGGGCAGCTGCCCATCTGCCTTATCTTTCTGTGCCCTAGCT  850

seq1  TCTTCTGGCCTGGGGTTGATGCTATAGAGGGATTCTCTCCCTCCCCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCCTGGGGTTGATGCTATAGAGGGATTCTCTCCCTCCCCTCAA  900

seq1  GACTGGGTGATTCAGGCATCAGTAAGCTGCTGAGTGCTAGGGCTGGGGCT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACTGGGTGATTCA-GCATCAGTAAGCTGCTGAGTGCTAGGGCTGGGGCT  949

seq1  CCC-TCCCTAATCCCCAGCCTGTGTTTATCCCATGGCCTTGGATGGGGGT  999
      ||| ||||||||||||||||||||||||| |||||||| ||||| |||||
seq2  CCCTTCCCTAATCCCCAGCCTGTGTTTAT-CCATGGCC-TGGAT-GGGGT  996

seq1  TGCTGAGTGATGAGCAAGTGGGTAGCCGTTGGACTTACTGGACAAGCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TGCTGAGTGATGAGCAAGTGGGTAGCCGTTGGACTTACTGGAC-AGCA-G  1044

seq1  ACAGAGCACCTCTGGGACA  1068
      |||||||| ||||||||||
seq2  ACAGAGCATCTCTGGGACA  1063


seq1: chr14_37911190_37912304
seq2: B6Ng01-331A20.g_76_1191 (reverse)

seq1  AGTCTGCAACTGGACAG--TGCAGCCTCTGTCCCCTCATTCCCCTAGGGA  48
      |||| ||||||| ||||   |||| |||||| |||||| ||||  |||||
seq2  AGTCGGCAACTGAACAGGTGGCAG-CTCTGT-CCCTCA-TCCCTAAGGGA  47

seq1  GCACAGACACCCACCCTCCAGGGCCCTTGCTACTCACCTA-GGTAAATGC  97
      ||||||||||||||||| |  || |||||||||||||||| |||||||||
seq2  GCACAGACACCCACCCTACCAGGACCTTGCTACTCACCTAGGGTAAATGC  97

seq1  GCAGCAGCCCCAGGACCAGGGCGACCCGTGGGCCACGCCTCATGTCTCCG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCCCCAGGACCAGGGCGACCCGTGGGCCACGCCTCATGTCTCCG  147

seq1  CGG-AAGGGTCGAAAGCCTGGCCACTGCCGAGGCCGGGTGCTGGACCTCG  196
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGGAAAGGGTCGAAAGCCTGGGCACTGCCGAGGCCGGGTGCTGGACCTCG  197

seq1  GAGCATGCCCTGGGCGCTGGATGAGAGCAGAGGGAACGTTGTGGGTGACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGCCCTGGGCGCTGGATGAGAGCAGAGGGAACGTTGTGGGTGACT  247

seq1  GCGGCGGCGGCGGTGGCGGAAGGGAGGGAGAGCGGGTGGTGCGAGGGCGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGGCGGCGGTGGCGGAAGGGAGGGAGAGCGGGTGGTGCGAGGGCGT  297

seq1  TAAGCGGATGACAGCGCTCACAGATCCTCACAGCTGGATGGCTCCGGTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGGATGACAGCGCTCACAGATCCTCACAGCTGGATGGCTCCGGTCA  347

seq1  GGTTACTAATGAGACCAATTACTGGGACCAGCTTATAGCGGCGGGTGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTAATGAGACCAATTACTGGGACCAGCTTATAGCGGCGGGTGGGA  397

seq1  GGGCGTGACAAGACTACCTCTCTCCTACCACGCCCAGTCTGCCCTAGCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGACAAGACTACCTCTCTCCTACCACGCCCAGTCTGCCCTAGCAA  447

seq1  CCCAGGAGCACCAGGTGCAGAGGTGGAGCTCTGCACAGAGAAACAAATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGCACCAGGTGCAGAGGTGGAGCTCTGCACAGAGAAACAAATAG  497

seq1  GCATCCCCAGACTACTTTTGAGCAAGCCACCAGAAATTCGGGATTTGCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCCAGACTACTTTTGAGCAAGCCACCAGAAATTCGGGATTTGCTG  547

seq1  TGGTTTGGTGTGGCTCAGGCTGCGCAGGGATTTTCCTGATTTGTTTAACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTGTGGCTCAGGCTGCGCAGGGATTTTCCTGATTTGTTTAACT  597

seq1  TGTTTTGTGGCTTTCACGGGTGCCAAGACCTCTCTGATCAAAGTACTCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGGCTTTCACGGGTGCCAAGACCTCTCTGATCAAAGTACTCCT  647

seq1  GGAAATAAAACAATGAGCAGAAAAACAGCTCTCTCAGGATGGAGGGGAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAACAATGAGCAGAAAAACAGCTCTCTCAGGATGGAGGGGAAG  697

seq1  ACATTGGGAGAAAAGAAAGCGGCATTGCCTTGCCAATTCAAATACGTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGGAGAAAAGAAAGCGGCATTGCCTTGCCAATTCAAATACGTTCT  747

seq1  TTAGTTTTGAGTCAGACCAAAAGAACAAGGGTAGAGAGTGATGTCCGAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTGAGTCAGACCAAAAGAACAAGGGTAGAGAGTGATGTCCGAAA  797

seq1  TGGTGTAGGAACGCAGGAAAAGTCCAAGGCTCTTCCTGGCTTGAATCCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGGAACGCAGGAAAAGTCCAAGGCTCTTCCTGGCTTGAATCCTC  847

seq1  CTTCTTCTCTAACACTGGAATGTGGGCGGAGATATCCCTTGTACCCTACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCTAACACTGGAATGTGGGCGGAGATATCCCTTGTACCCTACT  897

seq1  CCTTTTGGGCCATTCATCAATTGGGATGAGGTATTCCCCCCAACTTGAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGGCCATTCATCAATTGGGATGAGGTATTCCCCCCAACTTGAGT  947

seq1  AATAACTTGAACCCAGGTTGCTTTCAAAGTTGCCCCTGTGATGCTGTGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTGAACCCAGGTTGCTTTCAAAGTTGCCCCTGTGATGCTGTGCC  997

seq1  CTTAGACAAAGGAGACCCTCTGTAAGTTCCCTGGAGGTCCCAGAATCCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACAAAGGAGACCCTCTGTAAGTTCCCTGGAGGTCCCAGAATCCTC  1047

seq1  TCTTCCTGGGGTACCTCAAGGAAGCAGAGCACCTATACCCCTTGATCCAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGGGTACCTCAAGGAAGCAGAGCACCTATACCCCTTGATCCAA  1097

seq1  GCCTCCCAGATCAACTCTT  1115
      |||||||||||||||||||
seq2  GCCTCCCAGATCAACTCTT  1116


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