BAC Information

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BAC

Clone NameB6Ng01-331D04
Chromosome14 (Build37)
Map Location 8,315,435 - 8,431,549
singlet/doubletdoublet
Overlap geneLOC100042286, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881
Upstream geneLOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC666957, LOC100042263
Downstream geneLOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331D04.bB6Ng01-331D04.g
ACCGA117637GA117638
length1,1801,132
definitionB6Ng01-331D04.b B6Ng01-331D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,315,435 - 8,316,607)(8,430,380 - 8,431,549)
sequence
gaattcaccacagaactcaaatatttcatcaagttgaacacataatgcaa
gtgcattgttgcttgaagtatggtttccagtcctaagcattggcattgtc
agcagactgtaaggcaggcaattcctcaggtcctagcacatacccttatg
accagaatatagagagagtcacacacacacacacacatgcatgcacacag
aatcagggtgtatttgcagggagaatgagaaagtacaattgaaatagaat
ccagaggaaatgcagaggacattctgtttataaggcccaaaatctgagaa
gagtattaatgagcccaagaccttccatcatgtatcaggatggaccaaat
gggaccaagctttcctggtgatatagcaagcttcagcaagcaacacctgc
cagacaattacaaagctttgcaaacaaacaaacaacgaactcaagcaagc
aaacaatcaatcaaaacctcacagcaactaatatctcactcaaacggtca
catgtcagtgcctctatcaatacatgctgagacatcacatcctcttcaat
ccctcagttgtaggctttcattttcatataaaaaaaatagaataccctat
gtccgcagctcactcctgctctgacttcaagttcagcctgtgagaatgtt
tagcgagaaaaggttgggcacagtgacaccctggagttacagtctcccag
taccataaaatttaataagaataaattgtaggccataccatagacccaag
aaattgaccatgatgtttgacagaatgaaaaatacctcttgtgcaaagct
ttctcactgatgaagatcaggtgatcttgtagctcatttttcccactggt
catcggctgactgattagacttttccactttcctcacccattgtctgaac
aggagtgttggggatgatggtggtacaccagcagcccctatgggtagatg
aacacaagtgaatatgcatactgtcaaggaacagagcattgacagaacac
tgagtcctatacagacatcttacaaaaccaggaatcatgtgacccagtca
ttcctctttcgccttcacttgccacatgcatcatgtgaccacgacaggga
tcttcagcttattcaatagccttgcgtatggatcataggcagtactgtcc
attagctggttgtatatagaaaatcccatc
gaattcaagtagctaaccaccataagagctaagtacaccatctaaaaatg
gggtatagaactacacaaaaaattcacaatgaatcttgaatggctgagag
cactgaagaagtctgcaacatccttaatcttcagggaataaaaccaaaat
gaccctgaggttggtgtccaggagtatactttctagtgaagaatgccaag
atcaaaaacttctgtgaaaacacatggtcagaatttaaagaaacagaaac
attcttccatttctggtaggactgcaaactgctatgacaactatggaaat
caatatggaggttcctcagaaattcccacatagatctacttgaaggccat
ttaccaaccttactggtgaatggcctgcaactttcagtttttacttgatg
gcttattactcagattttcttatttattgagctatgactttgctcttggt
aagcatttggtctctctgattctaaagcagttctttgttcttacacattt
tttgaggaacctctatccactgggacttatttataccttcaaatccctct
aaattgggggactttttatacttgaggaagctgagtgacaaaagcaaagt
atgttgagccctttggtgtccagtgcacacgaatctatgggagtctagat
atgataatcctctagaacattccttaggaaagcagcaggaaaacagcagt
atgctctaaggtacctgtgtgacctcacttacctttgccagctttgtggg
tttctctactgctggtctgagaacaattggaaactcctggaatagatgtc
tcatatctcatttcctttgtcattgttagtatactagtgggagtaggttt
gaaggaaaaatactctcaagaacattaataaacaagtgcttcatatggac
catcaggatgaagtaccaagttcaaggacagttctgcagaactgctcaaa
gccagccaagtggagcagagaaagccagcagagtattcattacagcactg
cagcacctttctcagacaggtcacttagctttgtagagaggatgactgag
attagctgcccatatctccgaagagcagcagcatatttggcaagattggt
gttcaggctaaacgagtaggtgaattagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8315435_8316607
seq2: B6Ng01-331D04.b_48_1227

seq1  GAATTCACCACAGAACTCAAATATTTCATCAAGTTGAACACATAATGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACAGAACTCAAATATTTCATCAAGTTGAACACATAATGCAA  50

seq1  GTGCATTGTTGCTTGAAGTATGGTTTCCAGTCCTAAGCATTGGCATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTGTTGCTTGAAGTATGGTTTCCAGTCCTAAGCATTGGCATTGTC  100

seq1  AGCAGACTGTAAGGCAGGCAATTCCTCAGGTCCTAGCACATACCCTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGTAAGGCAGGCAATTCCTCAGGTCCTAGCACATACCCTTATG  150

seq1  ACCAGAATATAGAGAGAGTCACACACACACACACACATGCATGCACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATATAGAGAGAGTCACACACACACACACACATGCATGCACACAG  200

seq1  AATCAGGGTGTATTTGCAGGGAGAATGAGAAAGTACAATTGAAATAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGTGTATTTGCAGGGAGAATGAGAAAGTACAATTGAAATAGAAT  250

seq1  CCAGAGGAAATGCAGAGGACATTCTGTTTATAAGGCCCAAAATCTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAAATGCAGAGGACATTCTGTTTATAAGGCCCAAAATCTGAGAA  300

seq1  GAGTATTAATGAGCCCAAGACCTTCCATCATGTATCAGGATGGACCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTAATGAGCCCAAGACCTTCCATCATGTATCAGGATGGACCAAAT  350

seq1  GGGACCAAGCTTTCCTGGTGATATAGCAAGCTTCAGCAAGCAACACCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAAGCTTTCCTGGTGATATAGCAAGCTTCAGCAAGCAACACCTGC  400

seq1  CAGACAATTACAAAGCTTTGCAAACAAACAAACAACGAACTCAAGCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATTACAAAGCTTTGCAAACAAACAAACAACGAACTCAAGCAAGC  450

seq1  AAACAATCAATCAAAACCTCACAGCAACTAATATCTCACTCAAACGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCAATCAAAACCTCACAGCAACTAATATCTCACTCAAACGGTCA  500

seq1  CATGTCAGTGCCTCTATCAATACATGCTGAGACATCACATCCTCTTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGTGCCTCTATCAATACATGCTGAGACATCACATCCTCTTCAAT  550

seq1  CCCTCAGTTGTAGGCTTTCATTTTCATATAAAAAAAATAGAATACCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTTGTAGGCTTTCATTTTCATATAAAAAAAATAGAATACCCTAT  600

seq1  GTCCGCAGCTCACTCCTGCTCTGACTTCAAGTTCAGCCTGTGAGAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCAGCTCACTCCTGCTCTGACTTCAAGTTCAGCCTGTGAGAATGTT  650

seq1  TAGCGAGAAAAGGTTGGGCACAGTGACACCCTGGAGTTACAGTCTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAGAAAAGGTTGGGCACAGTGACACCCTGGAGTTACAGTCTCCCAG  700

seq1  TACCATAAAATTTAATAAGAATAAATTGTAGGCCATACCATAGACCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAAAATTTAATAAGAATAAATTGTAGGCCATACCATAGACCCAAG  750

seq1  AAATTGACCATGATGTTTGACAGAATGAAAAATACCTCTTGTGCAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACCATGATGTTTGACAGAATGAAAAATACCTCTTGTGCAAAGCT  800

seq1  TTCTCACTGATGAAGATCAGGTGATCTTGTAGCTCATTTTTCCCACTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGATGAAGATCAGGTGATCTTGTAGCTCATTTTTCCCACTGGT  850

seq1  CATCGGCTGACTGATTAGAC-TTTCCACTTTCCTCACCCATTGTCTGAAC  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATCGGCTGACTGATTAGACTTTTCCACTTTCCTCACCCATTGTCTGAAC  900

seq1  AGGAGTGTTGGGGATGATGGTGGTACACCAGCAGCCCCTATGGGTAGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTGGGGATGATGGTGGTACACCAGCAGCCCCTATGGGTAGATG  950

seq1  AACACAAGTGAATATGCATACTGTCAAGGAACAGAGCATTGACAGAACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGTGAATATGCATACTGTCAAGGAACAGAGCATTGACAGAACAC  1000

seq1  TGAGTCCTATACAGACATCTTACAAAA-CAGGAATCCATGTGACCCAGTC  1048
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TGAGTCCTATACAGACATCTTACAAAACCAGGAAT-CATGTGACCCAGTC  1049

seq1  ATTCCTCTTTCG-CTTCACTTTGCACATGCATCATGTGACCAAGGACA-G  1096
      |||||||||||| ||||||||  |||||||||||||||||| | |||| |
seq2  ATTCCTCTTTCGCCTTCACTTGCCACATGCATCATGTGACC-ACGACAGG  1098

seq1  GATCCTCAGGCTTATTC-ATAGC--TGCGTATGATTTAATTAGGCAGTAC  1143
      |||| ||| |||||||| |||||  ||||||||  | |  ||||||||||
seq2  GATCTTCA-GCTTATTCAATAGCCTTGCGTATGGATCA--TAGGCAGTAC  1145

seq1  TGTCCATAAGCTTGTGG--TATAGAAA---CCATC  1173
      ||||||| |||| || |  ||||||||   |||||
seq2  TGTCCATTAGCTGGTTGTATATAGAAAATCCCATC  1180

seq1: chr14_8430380_8431549
seq2: B6Ng01-331D04.g_67_1198 (reverse)

seq1  TTTACTAATTCACTTTACACTCTGTTTTTTTGCCCCCTG-ACACCCATAT  49
      ||||||||||||| |   |||| ||||        |||| ||||| ||  
seq2  TTTACTAATTCACCT---ACTC-GTTT------AGCCTGAACACCAAT--  38

seq1  TCTTTCCCCAATATTGCTGGCTGCTTCTTTTCTGAAGGAATATGGGGCAG  99
         || || |||||     |||||| || ||| ||    |||| ||||||
seq2  --CTTGCCAAATAT-----GCTGCTGCTCTTCGGA---GATAT-GGGCAG  77

seq1  CT-ATCTCAGGTCATCCCTTCTCCTACCAAAGCTAAGTGACCCTGTCCTG  148
      || |||||| |||||||  ||| ||| ||||||||||||| ||||||   
seq2  CTAATCTCA-GTCATCC--TCT-CTA-CAAAGCTAAGTGA-CCTGTC--T  119

seq1  GAGAAAGGTGCTGCAGGTGCTGGTAATGAATAACTTCTGCTTGGCTTTCT  198
      ||||||||||||||| ||||| ||||||||||   ||||| |||||||||
seq2  GAGAAAGGTGCTGCA-GTGCT-GTAATGAATA--CTCTGC-TGGCTTTCT  164

seq1  TCTTGCTCCACTTGGCTGGCTTTGAGCAGTTCTTGCAGAACTGTCCTTGA  248
         ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  --CTGCTCCACTTGGCTGGCTTTGAGCAGTTC-TGCAGAACTGTCCTTGA  211

seq1  ACTTGGTACTTCATCCTGATGGTCCATATGAAGCACTTGTTTTATTAATG  298
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTTGGTACTTCATCCTGATGGTCCATATGAAGCACTTG-TTTATTAATG  260

seq1  TTCTTGAGAGTATTTTTCCTTCAAACCTACTCCCACTAGTATACTAACAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGAGTATTTTTCCTTCAAACCTACTCCCACTAGTATACTAACAA  310

seq1  TGACAAAGGAAATGAGATATGAGACATCTATTCCAGGAGTTTCCAATTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGGAAATGAGATATGAGACATCTATTCCAGGAGTTTCCAATTGT  360

seq1  TCTCAGACCAGCAGTAGAGAAACCCACAAAGCTGGCAAAGGTAAGTGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACCAGCAGTAGAGAAACCCACAAAGCTGGCAAAGGTAAGTGAGG  410

seq1  TCACACAGGTACCTTAGAGCATACTGCTGTTTTCCTGCTGCTTTCCTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGGTACCTTAGAGCATACTGCTGTTTTCCTGCTGCTTTCCTAAG  460

seq1  GAATGTTCTAGAGGATTATCATATCTAGACTCCCATAGATTCGTGTGCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCTAGAGGATTATCATATCTAGACTCCCATAGATTCGTGTGCAC  510

seq1  TGGACACCAAAGGGCTCAACATACTTTGCTTTTGTCACTCAGCTTCCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCAAAGGGCTCAACATACTTTGCTTTTGTCACTCAGCTTCCTCA  560

seq1  AGTATAAAAAGTCCCCCAATTTAGAGGGATTTGAAGGTATAAATAAGTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAAAGTCCCCCAATTTAGAGGGATTTGAAGGTATAAATAAGTCC  610

seq1  CAGTGGATAGAGGTTCCTCAAAAAATGTGTAAGAACAAAGAACTGCTTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATAGAGGTTCCTCAAAAAATGTGTAAGAACAAAGAACTGCTTTA  660

seq1  GAATCAGAGAGACCAAATGCTTACCAAGAGCAAAGTCATAGCTCAATAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAGAGACCAAATGCTTACCAAGAGCAAAGTCATAGCTCAATAAA  710

seq1  TAAGAAAATCTGAGTAATAAGCCATCAAGTAAAAACTGAAAGTTGCAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATCTGAGTAATAAGCCATCAAGTAAAAACTGAAAGTTGCAGGC  760

seq1  CATTCACCAGTAAGGTTGGTAAATGGCCTTCAAGTAGATCTATGTGGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACCAGTAAGGTTGGTAAATGGCCTTCAAGTAGATCTATGTGGGAA  810

seq1  TTTCTGAGGAACCTCCATATTGATTTCCATAGTTGTCATAGCAGTTTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGGAACCTCCATATTGATTTCCATAGTTGTCATAGCAGTTTGCA  860

seq1  GTCCTACCAGAAATGGAAGAATGTTTCTGTTTCTTTAAATTCTGACCATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACCAGAAATGGAAGAATGTTTCTGTTTCTTTAAATTCTGACCATG  910

seq1  TGTTTTCACAGAAGTTTTTGATCTTGGCATTCTTCACTAGAAAGTATACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCACAGAAGTTTTTGATCTTGGCATTCTTCACTAGAAAGTATACT  960

seq1  CCTGGACACCAACCTCAGGGTCATTTTGGTTTTATTCCCTGAAGATTAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACACCAACCTCAGGGTCATTTTGGTTTTATTCCCTGAAGATTAAG  1010

seq1  GATGTTGCAGACTTCTTCAGTGCTCTCAGCCATTCAAGATTCATTGTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGCAGACTTCTTCAGTGCTCTCAGCCATTCAAGATTCATTGTGAA  1060

seq1  TTTTTTGTGTAGTTCTATACCCCATTTTTAGATGGTGTACTTAGCTCTTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTGTAGTTCTATACCCCATTTTTAGATGGTGTACTTAGCTCTTA  1110

seq1  TGGTGGTTAGCTACTTGAATTC  1170
      ||||||||||||||||||||||
seq2  TGGTGGTTAGCTACTTGAATTC  1132