BAC Information

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BAC

Clone NameB6Ng01-331J02
Chromosome14 (Build37)
Map Location 123,906,008 - 123,907,163
singlet/doubletsinglet
Overlap geneVgcnl1
Upstream genePcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneItgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331J02.bB6Ng01-331J02.g
ACCGA117897GA117898
length4541,138
definitionB6Ng01-331J02.b B6Ng01-331J02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgttcagttctgagccccattttttaatggggttatttgattttctga
agtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt
cttattgacggtgtcttttgccttgcagaaactttggagtttcattaggt
cccatttgtcgattctcgatcttacagcacaagccattgctgttctgttc
aggaatttttcccctgtgcccatatcttcaaggcttttccccactttctc
ctctataagtttcagtgtctctggttttatgtgaagttccttgatccact
tagatttgaccttagtacaaggagataagtatggatcgattcgcattctt
ctacacgataacaaccagttgtgccagcaccaattgttgaaaatgctgtc
tttc

gaattctaagtacattttcttgcagagatcaaaataataatgaacataat
caactaagagagttaagtatttttcctgtatagaagagtatctaaaagat
tatataggcaaaatctatataacacagaaattccatgacaaatataacga
gtgctcaataaatgcaagctattatcattgctcatgagagtagtattatt
cacttgtttttcacttcagtattaaaatgaatatagctgaaatgattcat
aatccaaatatatacttctttaataagacaggttttcagtaatatttaaa
cacatagaaagttacagacagaactagttctcactgttccatgttcaata
tctctgactcatctcttcttaaagatgttccatgaagatgccgctggtgg
ttggcagctggtagctgtggatgtcaacaagccccagggacgtgccccag
cctgcctacaggtacagcacaataccatttttaaaaatcatctagtatga
atctttgactttaattttataggaagaaattcataggctccaagctctaa
acttgcccagatttattgagaagttagagacatggtttattcttttttgt
attaaggactttgttagtattcatttagatatatagcaggtttccaactt
tgttttctgttgctgaccaaaagaaatctgcgcaggaaagtgtctatttg
gcttacatattaaggttgcattctattgagttcattcaaggcaggaactt
ggagacaggaaacatgggaaaatgcagcttattgccttgctgtctatgtc
tcattcaatctgtttacttaaatcatctaagaccacctaccctgggatgg
cacctcctacagaggtctgggtccctgccacaacaatgattaaccaagaa
aatgcaaccaaagatttgtctattggtcaatctgatgggagcatttctca
gttaggttccatcttccaagatgaccctagtttgtgtcgagttgtcaaac
tagcatcaaatggagcttgataaacttcatgatgagcacaaagcatagca
tttcacagtataaaattcataatagttttgttgcatgtttgtcttgtgaa
atattttctagagatctgaatatttaaggctgtacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123906008_123907163
seq2: B6Ng01-331J02.g_69_1206 (reverse)

seq1  ATTGTACAACCCTAAATAATTCAGATCTCTTAGAAAATATTTTCACAAGG  50
      |||||||| || ||||| ||||||||||| ||||||||| |||||||| |
seq2  ATTGTACAGCCTTAAAT-ATTCAGATCTC-TAGAAAATA-TTTCACAA-G  46

seq1  ACAAACATGGCAACAAAACTATTAATTGATTTTTATACTGTTGAAATGCT  100
      |||||||| |||||||||||||||  ||| |||||||||| |||||||||
seq2  ACAAACAT-GCAACAAAACTATTA--TGAATTTTATACTG-TGAAATGCT  92

seq1  ATTGCTTTTGTGCCTTCATTCATGAAGTTTATCAAGCCTCCATTTGATTG  150
      | ||| |||||||  ||| ||||||||||||||||| |||||||||| ||
seq2  A-TGC-TTTGTGC--TCA-TCATGAAGTTTATCAAG-CTCCATTTGA-TG  135

seq1  CTAGGTTTGAACAACTCGACACAAACTAGGGTCATCTTGGAAGATGGAAC  200
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTA-GTTTG-ACAACTCGACACAAACTAGGGTCATCTTGGAAGATGGAAC  183

seq1  CTAACCTGAGAAATGCTCCCATCAGATTGACCAATAGACAAATCTTTGGT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAA-CTGAGAAATGCTCCCATCAGATTGACCAATAGACAAATCTTTGGT  232

seq1  TGCATTTTCTTGGTTAATCATTGTTGTGGCAGGGACCCAGACCTCTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTCTTGGTTAATCATTGTTGTGGCAGGGACCCAGACCTCTGTAG  282

seq1  GAGGTGCCATCCCAGGGTAGGTGGTCTTAGATGATTTAAGTAAACAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCCATCCCAGGGTAGGTGGTCTTAGATGATTTAAGTAAACAGATT  332

seq1  GAATGAGACATAGACAGCAAGGCAATAAGCTGCATTTTCCCATGTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGACATAGACAGCAAGGCAATAAGCTGCATTTTCCCATGTTTCCT  382

seq1  GTCTCCAAGTTCCTGCCTTGAATGAACTCAATAGAATGCAACCTTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAAGTTCCTGCCTTGAATGAACTCAATAGAATGCAACCTTAATAT  432

seq1  GTAAGCCAAATAGACACTTTCCTGCGCAGATTTCTTTTGGTCAGCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAAATAGACACTTTCCTGCGCAGATTTCTTTTGGTCAGCAACAG  482

seq1  AAAACAAAGTTGGAAACCTGCTATATATCTAAATGAATACTAACAAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGTTGGAAACCTGCTATATATCTAAATGAATACTAACAAAGTC  532

seq1  CTTAATACAAAAAAGAATAAACCATGTCTCTAACTTCTCAATAAATCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACAAAAAAGAATAAACCATGTCTCTAACTTCTCAATAAATCTGG  582

seq1  GCAAGTTTAGAGCTTGGAGCCTATGAATTTCTTCCTATAAAATTAAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTAGAGCTTGGAGCCTATGAATTTCTTCCTATAAAATTAAAGTC  632

seq1  AAAGATTCATACTAGATGATTTTTAAAAATGGTATTGTGCTGTACCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCATACTAGATGATTTTTAAAAATGGTATTGTGCTGTACCTGTA  682

seq1  GGCAGGCTGGGGCACGTCCCTGGGGCTTGTTGACATCCACAGCTACCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTGGGGCACGTCCCTGGGGCTTGTTGACATCCACAGCTACCAGC  732

seq1  TGCCAACCACCAGCGGCATCTTCATGGAACATCTTTAAGAAGAGATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCACCAGCGGCATCTTCATGGAACATCTTTAAGAAGAGATGAGT  782

seq1  CAGAGATATTGAACATGGAACAGTGAGAACTAGTTCTGTCTGTAACTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATATTGAACATGGAACAGTGAGAACTAGTTCTGTCTGTAACTTTC  832

seq1  TATGTGTTTAAATATTACTGAAAACCTGTCTTATTAAAGAAGTATATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTAAATATTACTGAAAACCTGTCTTATTAAAGAAGTATATATT  882

seq1  TGGATTATGAATCATTTCAGCTATATTCATTTTAATACTGAAGTGAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATGAATCATTTCAGCTATATTCATTTTAATACTGAAGTGAAAAA  932

seq1  CAAGTGAATAATACTACTCTCATGAGCAATGATAATAGCTTGCATTTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAATAATACTACTCTCATGAGCAATGATAATAGCTTGCATTTATT  982

seq1  GAGCACTCGTTATATTTGTCATGGAATTTCTGTGTTATATAGATTTTGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTCGTTATATTTGTCATGGAATTTCTGTGTTATATAGATTTTGCC  1032

seq1  TATATAATCTTTTAGATACTCTTCTATACAGGAAAAATACTTAACTCTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATCTTTTAGATACTCTTCTATACAGGAAAAATACTTAACTCTCT  1082

seq1  TAGTTGATTATGTTCATTATTATTTTGATCTCTGCAAGAAAATGTACTTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGATTATGTTCATTATTATTTTGATCTCTGCAAGAAAATGTACTTA  1132

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1138


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