BAC Information

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BAC

Clone NameB6Ng01-331K06
Chromosome14 (Build37)
Map Location 89,537,301 - 89,538,418
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331K06.bB6Ng01-331K06.g
ACCGA117953GA117954
length1,1091,201
definitionB6Ng01-331K06.b B6Ng01-331K06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggaaaggggtttcttgcaggaaaaatcaggggatgagtggcag
attaaggcaactcagggaagatatacctaacctttgagagacttggagcc
ccagggagttgggacatctggtggggttgcgtggaataggatatcctatt
ggttacagggaactgtgaaggaggtgtagtatgtgaaaaagtcaaagagt
gaaccccgaggaggataaagtctggactgtaaaacaaaaagattaaagaa
taaaaaaaagaaaagaaaagaaaaatgataatctaccctagagagtggtg
actaggtaaaattgggcaggattagccaagggaaattgagagatttattt
atttatttatgtatctatttatttattgccatagggatggaaagacaata
aaaccagtaggtgtcagtaaacagtaacaaatatttgccttcaagtaaaa
taaagtatcactgcaatgttttattcaagaaagaaaattataggaaactg
gctgaaggttcctttaagtaattttttttttaaatttgccttcatgtaca
tggtcaaaatataagttcaatggcagatgagataaagaaaatattcatct
ggttgataatacattacaaaatctgagacaaagaaaacaaatgtatttca
aaataagtattcaaaattatcaggttctgattttattagattttctgttc
tgttatccaagtaaaccctcttggcaagaaaatattaatttctagaatga
taagtttatttttaaaccaattttccagatactggcatcttttccttttt
attgaaaatagattattttctcatataatacatcctaattattatttctc
ctcccaccactaaatgagttacaccccttccccaccctactccactatgg
attcaatgttttttctctcacaatacaacaaacaaacaaacaaaacaggt
ttccagagacacaatcaaaatgacacatatagatgtaaacaaaaaaaatt
catataagttggacttggaaagagaagagtcttcagtgctatgtgaatag
gtaagggagaaagtgcagccttggtccagtcctgatttttagtgggattg
cttccagct
gaattccatgatcatgggcccactgtcgtacttctctagctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcagtccatgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaaaccagaaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtaatcaaactaccacca
ggttgctggctggtcacctcgaggaatggtgccatatctgggactcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccgtgttgctgagcccaagcataatctcc
atctcgaccaccatggccactttgttcatgggcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcatatcc
acttgattattgaactcctcggctgaagtcaccttttggtgagcatttac
atgggacacaaatatcttcacatcctttacccatttggagagatctatcc
acatacttcttccccagatgtctttctcaccaattttccaattgtgatct
ttccaagtccctgaccatccagccaatccattggctacagcccatgagtc
agtgaataatcgtacatctggcaattttttcttgcaaacaaactgtaata
ccatgcgtactgcccgaagttctgcccactgtgaagatttcccttcacct
gtgtctttcagggttgtcccagaaaggggttgtaatgctgcagttgtccc
agaaaggggtagtaatgctgcagttgtcccagaaaaggggttgtaatgct
gcaggtggtgcctgcataacatgcagagccatcagtaaaccaggctctag
tcttctcttcttcagtcagttgatcataagggaacacccatgagctatag
gcacatgttggcagcagatggcattgtacagagtagaaaccatagcattg
agcaacttctccatgactgccttgtgcctcaggactgcacttgacccgat
taacgtcctatacttccttcatggataataggactgcttgcttgtacgag
tatccaacttattggactcttcgcagcgaggtctctgttatagatcatat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89537301_89538418
seq2: B6Ng01-331K06.b_47_1155

seq1  GAATTCAGGAAAGGGGTTTCTTGCAGGAAAAATCAGGGGATGAGTGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAAGGGGTTTCTTGCAGGAAAAATCAGGGGATGAGTGGCAG  50

seq1  ATTAAGGCAACTCAGGGAAGATATACCTAACCTTTGAGAGACTTGGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCAACTCAGGGAAGATATACCTAACCTTTGAGAGACTTGGAGCC  100

seq1  CCAGGGAGTTGGGACATCTGGTGGGGTTGCGTGGAATAGGATATCCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGTTGGGACATCTGGTGGGGTTGCGTGGAATAGGATATCCTATT  150

seq1  GGTTACAGGGAACTGTGAAGGAGGTGTAGTATGTGAAAAAGTCAAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGGGAACTGTGAAGGAGGTGTAGTATGTGAAAAAGTCAAAGAGT  200

seq1  GAACCCCGAGGAGGATAAAGTCTGGACTGTAAAACAAAAAGATTAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCGAGGAGGATAAAGTCTGGACTGTAAAACAAAAAGATTAAAGAA  250

seq1  TAAAAAAAAGAAAAGAAAAGAAAAATGATAATCTACCCTAGAGAGTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGAAAAGAAAAGAAAAATGATAATCTACCCTAGAGAGTGGTG  300

seq1  ACTAGGTAAAATTGGGCAGGATTAGCCAAGGGAAATTGAGAGATTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTAAAATTGGGCAGGATTAGCCAAGGGAAATTGAGAGATTTATTT  350

seq1  ATTTATTTATGTATCTATTTATTTATTGCCATAGGGATGGAAAGACAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATGTATCTATTTATTTATTGCCATAGGGATGGAAAGACAATA  400

seq1  AAACCAGTAGGTGTCAGTAAACAGTAACAAATATTTGCCTTCAAGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTAGGTGTCAGTAAACAGTAACAAATATTTGCCTTCAAGTAAAA  450

seq1  TAAAGTATCACTGCAATGTTTTATTCAAGAAAGAAAATTATAGGAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATCACTGCAATGTTTTATTCAAGAAAGAAAATTATAGGAAACTG  500

seq1  GCTGAAGGTTCCTTTAAGTAATTTTTTTTTTAAATTTGCCTTCATGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGTTCCTTTAAGTAATTTTTTTTTTAAATTTGCCTTCATGTACA  550

seq1  TGGTCAAAATATAAGTTCAATGGCAGATGAGATAAAGAAAATATTCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAAATATAAGTTCAATGGCAGATGAGATAAAGAAAATATTCATCT  600

seq1  GGTTGATAATACATTACAAAATCTGAGACAAAGAAAACAAATGTATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATAATACATTACAAAATCTGAGACAAAGAAAACAAATGTATTTCA  650

seq1  AAATAAGTATTCAAAATTATCAGGTTCTGATTTTATTAGATTTTCTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTATTCAAAATTATCAGGTTCTGATTTTATTAGATTTTCTGTTC  700

seq1  TGTTATCCAAGTAAACCCTCTTGGCAAGAAAATATTAATTTCTAGAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCCAAGTAAACCCTCTTGGCAAGAAAATATTAATTTCTAGAATGA  750

seq1  TAAGTTTATTTTTAAACCAATTTTCCAGATACTGGCATCTTTTCCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTATTTTTAAACCAATTTTCCAGATACTGGCATCTTTTCCTTTTT  800

seq1  ATTGAAAATAGATTATTTTCTCATATAATACATCCTAATTATTATTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATAGATTATTTTCTCATATAATACATCCTAATTATTATTTCTC  850

seq1  CTCCCACCACTAAATGAGTTACACCCCTTCCCCACCCTACTCCACTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCACTAAATGAGTTACACCCCTTCCCCACCCTACTCCACTATGG  900

seq1  ATTCAATGTTTTTTCTCTCACAAAACAAACAAACAAACAAACAAAACAGG  950
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  ATTCAATGTTTTTTCTCTCACAATAC-AACAAACAAACAAACAAAACAGG  949

seq1  TTTCCAAGAGACAACAATCAAAAATGACAACATAATAAGATG-AAACAAA  999
      ||||| |||||| |||||| |||||||| |||||   ||||| |||||||
seq2  TTTCC-AGAGAC-ACAATC-AAAATGAC-ACATA--TAGATGTAAACAAA  993

seq1  AAAAATTCATATTAAAGTTGGACTT-GAAAGAGAAGAGTCTTCAAGTGCT  1048
      ||||||||||||  ||||||||||| ||||||||||||||||| ||||||
seq2  AAAAATTCATAT--AAGTTGGACTTGGAAAGAGAAGAGTCTTC-AGTGCT  1040

seq1  ATGTTGAATAGGT-AGGGAGAAAGTTGGCAGCCTT-GTCCAGTCCCTGA-  1095
      ||| ||||||||| |||||||||||  |||||||| ||||||| ||||| 
seq2  ATG-TGAATAGGTAAGGGAGAAAGT--GCAGCCTTGGTCCAGT-CCTGAT  1086

seq1  TTTTAGTGGGATTGCTTCCAGCT  1118
      |||||||||||||||||||||||
seq2  TTTTAGTGGGATTGCTTCCAGCT  1109