BAC Information

Click to search

BAC

Clone NameB6Ng01-331O14
Chromosome14 (Build37)
Map Location 49,096,520 - 49,284,139
singlet/doubletdoublet
Overlap gene6720456H20Rik, 4930572G02Rik, Otx2
Upstream geneFbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831
Downstream geneLOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331O14.bB6Ng01-331O14.g
ACCGA118160GA118161
length8241,162
definitionB6Ng01-331O14.b B6Ng01-331O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,283,317 - 49,284,139)(49,096,520 - 49,097,662)
sequence
gaattcctctttagagggtatttaaataaggaacgactgggtttttaaag
aatcttacgttcacagttacaaatagctagatcttggaagaaggaacaca
gaatataaagtgttcttcgcaaaagtaactagtttcactcgttaacaatc
cagttctcttagaaggacatttataaaaatcacattttagggtggggaaa
taagacttgtgttctgaatgtaaatctggaagaaatcacagctgttgagt
tttgtttgtgaagctttgcctttgtctcttaagcaaggtaaatatgaaaa
cctaaggtcttaattttttcattaatgaactttatgaagtgacagagaac
tcagtcttgtatccgccattttgaggaagtttctcagagtgtcaaagttt
caaagcagagagagagagagagagagagagagagagagagagagagagag
agagagagagagagcgctttaagtgccttatttttggaaaataaaagcca
gccttacacacattgcctgcctgtattaacatcgatggggggaggggttc
agcaaaggaacacagatgacttttctttttctccccccacccagctcctt
ttcttacaaaattgtaggaaatttaaaaagcagagagaagtgcggttagt
tccattgctttggatgtttattgacttcaaacctaaatatatgggaaagg
tggctcccgttgcagcccccctctccccccaacccaaaatccaggataaa
gtgtttcccgctggatctgtagcctcctgacataaaaaacatggaagcgg
cttgctgtaggattgcacccctct
gaattccagaattcacattgttaggacttaatctttgcaatgttttcata
tcgtctgttttagaaataaatgtacaggtgaaggattcctccaagaatag
catatgggacaacacggttacgtgtaatagcaaattccactaaacagaca
gaggagagaaatgtgggtgcccctgtggtctataaaagctagctttgttt
acactaaatgcttgtatgaaatatatacccagagctcttggggagaatct
gcatacttgtaatgacgtatacattaaagccccttctaatgacggtggtg
aagtgagttagccttaaaatagtgttcagaggcaactaacaagccgttgc
tgccgagtgggtcatctcagctgtgcaacgctgcatgtcatgatatggat
taaatgtaaaacacgcactttgcttggttctcatacatctttgctaatat
ttgcttcacttgggttttgccacgaaaaggaatccaggctgatggaattt
tctagtaatctgcaataatcagaaggtttaacatagtattctgcggtgac
ttaacataaattgagagatcagccttaagcaaacacatttgatgtttccc
ttgatgtgttttcgaagttccaggatgaatggactaaagtaaacatgtct
ccgccgtgtctcctgtgcaggaactcaccctcagcttgctgctgaggctg
actctggccttctctgctggcctgctgccctatgtctacctgcctgtctc
gtcctacctcagtcgcgcccgctggacctggggagaccagacgacactgc
gagggtttctgacacattttcttcagggaagaatatggaacgttcagcct
ggtaaactcatatgtaaagtccttccaaggaaggaaacaagtactgacac
tcgagtgctcagtccgggtcatgccttgacagatcagcagatagccactg
ccattctaggtactagattagttccctggggagtgtggcttctcacattt
acagttttactgtgacacagcatactccttgcttccctctggagcaatag
gctttatgccccaccttatatccctcatgccttccggtttcctggcttgc
agctgccatgtgtgtcccccaccactgtgctgggtgccagccctgtacat
gtgttccccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49283317_49284139
seq2: B6Ng01-331O14.b_47_870 (reverse)

seq1  AGAGGGGTGCATTCCTACAGCAAGCCGCTTCCATGTTTTTTATGTCAGGA  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTGCAATCCTACAGCAAGCCGCTTCCATGTTTTTTATGTCAGGA  50

seq1  GGCTACAGATCCAGCGGGAAACACTTTTTCTTGGATTTTGGGTTGGGGGG  100
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  GGCTACAGATCCAGCGGGAAACACTTTATCCTGGATTTTGGGTTGGGGGG  100

seq1  AGA-GGGGGCTGCAACGGGAGCCACCTTTCCCATATATTTAGGTTTGAAG  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGGCTGCAACGGGAGCCACCTTTCCCATATATTTAGGTTTGAAG  150

seq1  TCAATAAACATCCAAAGCAATGGAACTAACCGCACTTCTCTCTGCTTTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAACATCCAAAGCAATGGAACTAACCGCACTTCTCTCTGCTTTTT  200

seq1  AAATTTCCTACAATTTTGTAAGAAAAGGAGCTGGGTGGGGGGAGAAAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTACAATTTTGTAAGAAAAGGAGCTGGGTGGGGGGAGAAAAAG  250

seq1  AAAAGTCATCTGTGTTCCTTTGCTGAACCCCTCCCCCCATCGATGTTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCATCTGTGTTCCTTTGCTGAACCCCTCCCCCCATCGATGTTAAT  300

seq1  ACAGGCAGGCAATGTGTGTAAGGCTGGCTTTTATTTTCCAAAAATAAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGGCAATGTGTGTAAGGCTGGCTTTTATTTTCCAAAAATAAGGC  350

seq1  ACTTAAAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCTCTCTGCTTTGAAACTTTGACACTCTGAGAAACTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTGCTTTGAAACTTTGACACTCTGAGAAACTTCC  450

seq1  TCAAAATGGCGGATACAAGACTGAGTTCTCTGTCACTTCATAAAGTTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGGCGGATACAAGACTGAGTTCTCTGTCACTTCATAAAGTTCAT  500

seq1  TAATGAAAAAATTAAGACCTTAGGTTTTCATATTTACCTTGCTTAAGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAAATTAAGACCTTAGGTTTTCATATTTACCTTGCTTAAGAGA  550

seq1  CAAAGGCAAAGCTTCACAAACAAAACTCAACAGCTGTGATTTCTTCCAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCAAAGCTTCACAAACAAAACTCAACAGCTGTGATTTCTTCCAGA  600

seq1  TTTACATTCAGAACACAAGTCTTATTTCCCCACCCTAAAATGTGATTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTCAGAACACAAGTCTTATTTCCCCACCCTAAAATGTGATTTTT  650

seq1  ATAAATGTCCTTCTAAGAGAACTGGATTGTTAACGAGTGAAACTAGTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTCCTTCTAAGAGAACTGGATTGTTAACGAGTGAAACTAGTTAC  700

seq1  TTTTGCGAAGAACACTTTATATTCTGTGTTCCTTCTTCCAAGATCTAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCGAAGAACACTTTATATTCTGTGTTCCTTCTTCCAAGATCTAGCT  750

seq1  ATTTGTAACTGTGAACGTAAGATTCTTTAAAAACCCAGTCGTTCCTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAACTGTGAACGTAAGATTCTTTAAAAACCCAGTCGTTCCTTATT  800

seq1  TAAATACCCTCTAAAGAGGAATTC  823
      ||||||||||||||||||||||||
seq2  TAAATACCCTCTAAAGAGGAATTC  824

seq1: chr14_49096520_49097662
seq2: B6Ng01-331O14.g_69_1230

seq1  GAATTCCAGAATTCACATTGTTAGGACTTAATCTTTGCAATGTTTTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATTCACATTGTTAGGACTTAATCTTTGCAATGTTTTCATA  50

seq1  TCGTCTGTTTTAGAAATAAATGTACAGGTGAAGGATTCCTCCAAGAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGTTTTAGAAATAAATGTACAGGTGAAGGATTCCTCCAAGAATAG  100

seq1  CATATGGGACAACACGGTTACGTGTAATAGCAAATTCCACTAAACAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGGACAACACGGTTACGTGTAATAGCAAATTCCACTAAACAGACA  150

seq1  GAGGAGAGAAATGTGGGTGCCCCTGTGGTCTATAAAAGCTAGCTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAAATGTGGGTGCCCCTGTGGTCTATAAAAGCTAGCTTTGTTT  200

seq1  ACACTAAATGCTTGTATGAAATATATACCCAGAGCTCTTGGGGAGAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAATGCTTGTATGAAATATATACCCAGAGCTCTTGGGGAGAATCT  250

seq1  GCATACTTGTAATGACGTATACATTAAAGCCCCTTCTAATGACGGTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTGTAATGACGTATACATTAAAGCCCCTTCTAATGACGGTGGTG  300

seq1  AAGTGAGTTAGCCTTAAAATAGTGTTCAGAGGCAACTAACAAGCCGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTAGCCTTAAAATAGTGTTCAGAGGCAACTAACAAGCCGTTGC  350

seq1  TGCCGAGTGGGTCATCTCAGCTGTGCAACGCTGCATGTCATGATATGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGAGTGGGTCATCTCAGCTGTGCAACGCTGCATGTCATGATATGGAT  400

seq1  TAAATGTAAAACACGCACTTTGCTTGGTTCTCATACATCTTTGCTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAAACACGCACTTTGCTTGGTTCTCATACATCTTTGCTAATAT  450

seq1  TTGCTTCACTTGGGTTTTGCCACGAAAAGGAATCCAGGCTGATGGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCACTTGGGTTTTGCCACGAAAAGGAATCCAGGCTGATGGAATTT  500

seq1  TCTAGTAATCTGCAATAATCAGAAGGTTTAACATAGTATTCTGCGGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAATCTGCAATAATCAGAAGGTTTAACATAGTATTCTGCGGTGAC  550

seq1  TTAACATAAATTGAGAGATCAGCCTTAAGCAAACACATTTGATGTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATAAATTGAGAGATCAGCCTTAAGCAAACACATTTGATGTTTCCC  600

seq1  TTGATGTGTTTTCGAAGTTCCAGGATGAATGGACTAAAGTAAACATGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGTTTTCGAAGTTCCAGGATGAATGGACTAAAGTAAACATGTCT  650

seq1  CCGCCGTGTCTCCTGTGCAGGAACTCACCCTCAGCTTGCTGCTGAGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGTGTCTCCTGTGCAGGAACTCACCCTCAGCTTGCTGCTGAGGCTG  700

seq1  ACTCTGGCCTTCTCTGCTGGCCTGCTGCCCTATGTCTACCTGCCTGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCCTTCTCTGCTGGCCTGCTGCCCTATGTCTACCTGCCTGTCTC  750

seq1  GTCCTACCTCAGTCGCGCCCGCTGGACCTGGGGAGACCAGACGACACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACCTCAGTCGCGCCCGCTGGACCTGGGGAGACCAGACGACACTGC  800

seq1  GAGGGTTTCTGACACA-TTTCTTCAGGGAAGAATATGGAACGTTCAGCCT  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGGGTTTCTGACACATTTTCTTCAGGGAAGAATATGGAACGTTCAGCCT  850

seq1  GGTAAACTCATATGTAAAGTCCTTCCAAGGAAGGAAACAAGTACTGACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACTCATATGTAAAGTCCTTCCAAGGAAGGAAACAAGTACTGACAC  900

seq1  TCGAGTGCTCAGTCCGGGTCATGCC-TGACAGATCAGCAGATAG-CACTG  947
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  TCGAGTGCTCAGTCCGGGTCATGCCTTGACAGATCAGCAGATAGCCACTG  950

seq1  CCATTCTAGGTACTAGATTAG-TCCCT-GGGAGTGTGGCTTCTCACATTT  995
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  CCATTCTAGGTACTAGATTAGTTCCCTGGGGAGTGTGGCTTCTCACATTT  1000

seq1  ACAG-TTTACTGTGACAACAGCATACTCC-TGCTTCCCTCT-GAGC-ATA  1041
      |||| ||||||||||| |||||||||||| ||||||||||| |||| |||
seq2  ACAGTTTTACTGTGAC-ACAGCATACTCCTTGCTTCCCTCTGGAGCAATA  1049

seq1  GGC-TTATG-CCCACCTTATAT-CCTCATGCCT--CCGTTTCCTGGC-TG  1085
      ||| ||||| |||||||||||| ||||||||||  | |||||||||| ||
seq2  GGCTTTATGCCCCACCTTATATCCCTCATGCCTTCCGGTTTCCTGGCTTG  1099

seq1  CAGGCTGCACATGTGT---CCCCA-CACTG-CCTGGGTGCCAG-CCTGTA  1129
      || ||||| |||||||   ||||| |||||  ||||||||||| ||||||
seq2  CA-GCTGC-CATGTGTGTCCCCCACCACTGTGCTGGGTGCCAGCCCTGTA  1147

seq1  CATGTG-TCCCCACA  1143
      |||||| ||||||||
seq2  CATGTGTTCCCCACA  1162