BAC Information

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BAC

Clone NameB6Ng01-332H04
Chromosome14 (Build37)
Map Location 108,879,954 - 108,997,212
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332H04.bB6Ng01-332H04.g
ACCGA118549GA118550
length1,0671,150
definitionB6Ng01-332H04.b B6Ng01-332H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,996,140 - 108,997,212)(108,879,954 - 108,881,118)
sequence
gaattctttatttcccagatttactatttctgcagtccagtcctaatctg
cctggaatgcagacacgcctataatcccaggagactgaggcaactagaac
tctgagtacaagatcagtctggtacaaagcaagttcctggtacaaaaaaa
aaaacttaggtacaggtgtggtggtacacatttttagtacaaacactcag
gagtcagtgatgagaagtgcagtggagtttagtgtggcagattggttgat
ggcagttaatttcattgagttcaaaggcagtttttactagatagttttta
cagagactgggtgaagaaagagctagctacacatagctgaagattgaatg
aacaagagaatgagaaggagccagaagattaaaacatattgacaaaagtt
aaggccaggtagaacaattcattcagaagccaagagaagtgagtttgagt
cagtcagcttggagaggagttttagccagatcagctgagttgaaccctct
agccagagttcagaaagagctacaaagggtaagctgattcaggagtaagc
ctctgagataacaattgcattgggtgaataaaagtttcttttacatgata
tagatatgagaaagaatttactaacaggtaatgataatgtaggcttatgt
ttccattgagcttattcagctgtaagccagggagatgacaattacatcag
atgaaaaaagttaattttacatgggctgttttcagagaggcgggtgattt
attttttttctcactgtcacaaatctgttaagtagagggtaatagctagg
gctggccgggctatgtgtcttggtcccagttgtctgtagtacatgttgtt
tcatatatcactttccagctcgcttgtttggacaagttcataggtatcta
gaaagcaatataaagcatagtgatatttgaatcgcctctttctggctcca
taacactgtacagcacaagtgtcatatacagtaaaggccataatttgaaa
ctttgagacagtgtttcaagtagtgtcatttaacacacacacacacacac
acacacagacacgacac

gaattcagtgaattaactacaatgttctgaggcttcttcgtattaaccag
atggactgaactaatggcaaccttgcagtagcaattacattttatttcct
atgtagcttagagcaagtacagatatattaacccaggaaaattcaggatg
atgagagaggaacagcattcaagcatgatttgaaaaacatatggcttttg
tttaaacttctgagccatacaaactattcattacaattgaagaaacagta
aagcagaagagccaagcaagagagaaatagaaaacttatgttagttaact
aaaatctaaaatatttacttagaacatttgttaagttaaggagaaggaag
acaggatgatagggagacaattttattctttgtaattttgcagcagaatt
ataaagataaaaacacagatacgactatgttaccaagatagttctgaaca
aatgcttacaaaaattttacaatgaacttttgtgagttatgtgcagagac
tagggagtaaagaatccattgaatatgtttaaaactaatttgttttcatt
tatattttcagtcttccatagtagaaactgaatctcagcagagtgctaag
tcatgtgctagttccctgatctattccttagaaatatactttctgtcacg
agcatatgtttggatgaatatatagatttttcactttttgctcatggtct
aattataaagggcagcaaatgtaattttaatataaatgtattcagtaaat
taatatagtccctgttgttttcatcctagctaattccccaataacgacac
aaaaagttcaacatttatttgaagtatattaccttaatacttgggcagtc
aattgatctattttaatcctctaagctaatttggggacaccttcagccaa
aatctcagtaatacttggcatttaaagccttccattctccagctgaactc
ttatgatgtctactctctcctttggctcaatctgctttactcttctctct
cttcactttaaaaacattattatgtgggggttttactgtcatgtttcttt
ctgcatctgatcatttgaatttctcccaagtactgtaatacttccacaca
catatagcctggtctcacttgaactctagtcgtctgattgctgtcatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_108996140_108997212
seq2: B6Ng01-332H04.b_41_1107 (reverse)

seq1  GTGT-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAATGACACTTAAC  49
      |||| |||| ||||||||||||||||||||||||||||||||||||  ||
seq2  GTGTCGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTTAAATGACACT--AC  48

seq1  TTTGAAAACACTGTTCTCAAAGTTTCAAATTTATGGCCTTTACTTGTATA  99
      ||   |||||||| ||||||||||||||| ||||||||||||| ||||||
seq2  TT--GAAACACTG-TCTCAAAGTTTCAAA-TTATGGCCTTTAC-TGTATA  93

seq1  TGACACTTGTGCTGTACAGTGTTATGGAGCCAGAAAGAGGCGATTCAAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTGTGCTGTACAGTGTTATGGAGCCAGAAAGAGGCGATTCAAAT  143

seq1  ATCACTATGCTTTATATTGCTTTCTAGATACCTATGAACTTGTCCAAACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATGCTTTATATTGCTTTCTAGATACCTATGAACTTGTCCAAACA  193

seq1  AGCGAGCTGGAAAGTGATATATGAAACAACATGTACTACAGACAACTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCTGGAAAGTGATATATGAAACAACATGTACTACAGACAACTGGG  243

seq1  ACCAAGACACATAGCCCGGCCAGCCCTAGCTATTACCCTCTACTTAACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACACATAGCCCGGCCAGCCCTAGCTATTACCCTCTACTTAACAG  293

seq1  ATTTGTGACAGTGAGAAAAAAAATAAATCACCCGCCTCTCTGAAAACAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGACAGTGAGAAAAAAAATAAATCACCCGCCTCTCTGAAAACAGC  343

seq1  CCATGTAAAATTAACTTTTTTCATCTGATGTAATTGTCATCTCCCTGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAAAATTAACTTTTTTCATCTGATGTAATTGTCATCTCCCTGGCT  393

seq1  TACAGCTGAATAAGCTCAATGGAAACATAAGCCTACATTATCATTACCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGAATAAGCTCAATGGAAACATAAGCCTACATTATCATTACCTG  443

seq1  TTAGTAAATTCTTTCTCATATCTATATCATGTAAAAGAAACTTTTATTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAATTCTTTCTCATATCTATATCATGTAAAAGAAACTTTTATTCA  493

seq1  CCCAATGCAATTGTTATCTCAGAGGCTTACTCCTGAATCAGCTTACCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCAATTGTTATCTCAGAGGCTTACTCCTGAATCAGCTTACCCTT  543

seq1  TGTAGCTCTTTCTGAACTCTGGCTAGAGGGTTCAACTCAGCTGATCTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCTTTCTGAACTCTGGCTAGAGGGTTCAACTCAGCTGATCTGGC  593

seq1  TAAAACTCCTCTCCAAGCTGACTGACTCAAACTCACTTCTCTTGGCTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCCTCTCCAAGCTGACTGACTCAAACTCACTTCTCTTGGCTTCT  643

seq1  GAATGAATTGTTCTACCTGGCCTTAACTTTTGTCAATATGTTTTAATCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATTGTTCTACCTGGCCTTAACTTTTGTCAATATGTTTTAATCTT  693

seq1  CTGGCTCCTTCTCATTCTCTTGTTCATTCAATCTTCAGCTATGTGTAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCTTCTCATTCTCTTGTTCATTCAATCTTCAGCTATGTGTAGCT  743

seq1  AGCTCTTTCTTCACCCAGTCTCTGTAAAAACTATCTAGTAAAAACTGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTCTTCACCCAGTCTCTGTAAAAACTATCTAGTAAAAACTGCCT  793

seq1  TTGAACTCAATGAAATTAACTGCCATCAACCAATCTGCCACACTAAACTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAATGAAATTAACTGCCATCAACCAATCTGCCACACTAAACTC  843

seq1  CACTGCACTTCTCATCACTGACTCCTGAGTGTTTGTACTAAAAATGTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACTTCTCATCACTGACTCCTGAGTGTTTGTACTAAAAATGTGTA  893

seq1  CCACCACACCTGTACCTAAGTTTTTTTTTTTGTACCAGGAACTTGCTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACCTGTACCTAAGTTTTTTTTTTTGTACCAGGAACTTGCTTTG  943

seq1  TACCAGACTGATCTTGTACTCAGAGTTCTAGTTGCCTCAGTCTCCTGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGACTGATCTTGTACTCAGAGTTCTAGTTGCCTCAGTCTCCTGGGA  993

seq1  TTATAGGCGTGTCTGCATTCCAGGCAGATTAGGACTGGACTGCAGAAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGCGTGTCTGCATTCCAGGCAGATTAGGACTGGACTGCAGAAATA  1043

seq1  GTAAATCTGGGAAATAAAGAATTC  1073
      ||||||||||||||||||||||||
seq2  GTAAATCTGGGAAATAAAGAATTC  1067


seq1: chr14_108879954_108881118
seq2: B6Ng01-332H04.g_66_1215

seq1  GAATTCAGTGAATTAACTACAATGTTCTGAGGCTTCTTCGTATTAACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAATTAACTACAATGTTCTGAGGCTTCTTCGTATTAACCAG  50

seq1  ATGGACTGAACTAATGGCAACCTTGCAGTAGCAATTACATTTTATTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGAACTAATGGCAACCTTGCAGTAGCAATTACATTTTATTTCCT  100

seq1  ATGTAGCTTAGAGCAAGTACAGATATATTAACCCAGGAAAATTCAGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTTAGAGCAAGTACAGATATATTAACCCAGGAAAATTCAGGATG  150

seq1  ATGAGAGAGGAACAGCATTCAAGCATGATTTGAAAAACATATGGCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAGGAACAGCATTCAAGCATGATTTGAAAAACATATGGCTTTTG  200

seq1  TTTAAACTTCTGAGCCATACAAACTATTCATTACAATTGAAGAAACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTCTGAGCCATACAAACTATTCATTACAATTGAAGAAACAGTA  250

seq1  AAGCAGAAGAGCCAAGCAAGAGAGAAATAGAAAACTTATGTTAGTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGAGCCAAGCAAGAGAGAAATAGAAAACTTATGTTAGTTAACT  300

seq1  AAAATCTAAAATATTTACTTAGAACATTTGTTAAGTTAAGGAGAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAAAATATTTACTTAGAACATTTGTTAAGTTAAGGAGAAGGAAG  350

seq1  ACAGGATGATAGGGAGACAATTTTATTCTTTGTAATTTTGCAGCAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGATAGGGAGACAATTTTATTCTTTGTAATTTTGCAGCAGAATT  400

seq1  ATAAAGATAAAAACACAGATACGACTATGTTACCAAGATAGTTCTGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATAAAAACACAGATACGACTATGTTACCAAGATAGTTCTGAACA  450

seq1  AATGCTTACAAAAATTTTACAATGAACTTTTGTGAGTTATGTGCAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTACAAAAATTTTACAATGAACTTTTGTGAGTTATGTGCAGAGAC  500

seq1  TAGGGAGTAAAGAATCCATTGAATATGTTTAAAACTAATTTGTTTTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTAAAGAATCCATTGAATATGTTTAAAACTAATTTGTTTTCATT  550

seq1  TATATTTTCAGTCTTCCATAGTAGAAACTGAATCTCAGCAGAGTGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCAGTCTTCCATAGTAGAAACTGAATCTCAGCAGAGTGCTAAG  600

seq1  TCATGTGCTAGTTCCCTGATCTATTCCTTAGAAATATACTTTCTGTCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCTAGTTCCCTGATCTATTCCTTAGAAATATACTTTCTGTCACG  650

seq1  AGCATATGTTTGGATGAATATATAGATTTTTCACTTTTTGCTCATGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATGTTTGGATGAATATATAGATTTTTCACTTTTTGCTCATGGTCT  700

seq1  AATTATAAAGGGCAGCAAATGTAATTTTAATATAAATGTATTCAGTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAGGGCAGCAAATGTAATTTTAATATAAATGTATTCAGTAAAT  750

seq1  TAATATAGTCCCTGTTGTTTTCATCCTAGCTAATTCCCCAATAACGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGTCCCTGTTGTTTTCATCCTAGCTAATTCCCCAATAACGACAC  800

seq1  AAAAAGTTCAACATTTATTTGAAGTATATTACCTTAATACTTGGGCAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTCAACATTTATTTGAAGTATATTACCTTAATACTTGGGCAGTC  850

seq1  AATTGATCTATTTTAATCCTCTAAGCTAATTTGGGGACACCTTCAGCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCTATTTTAATCCTCTAAGCTAATTTGGGGACACCTTCAGCCAA  900

seq1  AATCTCAGTAATACTTGGCATTTAAAGCCTTCCATTCTCCAGCTGAACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGTAATACTTGGCATTTAAAGCCTTCCATTCTCCAGCTGAACTC  950

seq1  TTATGATGTCTACTCTCCTCCTTTGGCTCAATCTGCTTTACTCTTCTCTC  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTATGATGTCTACTCT-CTCCTTTGGCTCAATCTGCTTTACTCTTCTCTC  999

seq1  TCTTCACTTTAAAAAACATTATTATTGTGGGGTTTTACTGTCCATGTTTC  1050
      |||||||||| ||||||||||||||   ||||||||||||| ||||||||
seq2  TCTTCACTTT-AAAAACATTATTATGTGGGGGTTTTACTGT-CATGTTTC  1047

seq1  TTTCTGCATTCTGATCATTTGAATTTCTCCCCAAATTACCTGTTAATAAC  1100
      |||||||| ||||||||||||||||||||||  || || ||| |||||  
seq2  TTTCTGCA-TCTGATCATTTGAATTTCTCCC--AAGTA-CTG-TAATACT  1092

seq1  TTCACACACATATTAGGCTGGGTCTCACTTGAACTCCTATGTCCCTTCTA  1150
      | |||||||||| ||| || ||||||||||||||| ||| ||  | ||| 
seq2  TCCACACACATA-TAGCCT-GGTCTCACTTGAACT-CTA-GT--CGTCT-  1135

seq1  AATTGCTGTCATATC  1165
       ||||||||||||||
seq2  GATTGCTGTCATATC  1150


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